Wall clock time and date at job start Tue Mar 31 2020 19:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52992 * 109.47200 * 2 1 4 4 N 1.46505 * 109.47036 * 299.99697 * 3 2 1 5 5 C 1.36939 * 119.99891 * 180.02562 * 4 3 2 6 6 H 1.07997 * 120.00438 * 359.97438 * 5 4 3 7 7 C 1.38817 * 119.99879 * 180.02562 * 5 4 3 8 8 N 1.31611 * 120.00290 * 179.97438 * 7 5 4 9 9 Si 1.86797 * 119.99833 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47435 * 89.99926 * 9 7 5 11 11 H 1.48500 * 109.47152 * 210.00218 * 9 7 5 12 12 H 1.48506 * 109.47137 * 329.99800 * 9 7 5 13 13 N 1.46503 * 109.47264 * 239.99691 * 2 1 3 14 14 C 1.34772 * 119.99868 * 174.06068 * 13 2 1 15 15 O 1.21285 * 120.00372 * 355.57671 * 14 13 2 16 16 C 1.50702 * 120.00153 * 175.57279 * 14 13 2 17 17 H 1.08993 * 109.51002 * 300.00475 * 16 14 13 18 18 C 1.53141 * 109.51364 * 179.90143 * 16 14 13 19 19 C 1.53259 * 109.50449 * 170.54465 * 18 16 14 20 20 N 1.46466 * 108.80167 * 50.34641 * 19 18 16 21 21 C 1.36318 * 127.77922 * 162.91816 * 20 19 18 22 22 C 1.34850 * 106.69000 * 180.02562 * 21 20 19 23 23 N 1.34293 * 108.07577 * 359.97438 * 22 21 20 24 24 C 1.30097 * 109.20816 * 359.97158 * 23 22 21 25 25 C 1.51149 * 127.36872 * 180.13941 * 24 23 22 26 26 C 1.52998 * 109.46919 * 119.99820 * 2 1 3 27 27 C 1.53001 * 117.49993 * 122.15990 * 26 2 1 28 28 C 1.53000 * 117.50069 * 53.49656 * 26 2 1 29 29 H 1.09007 * 109.47459 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47593 * 300.00498 * 1 2 3 31 31 H 1.09001 * 109.47089 * 60.00123 * 1 2 3 32 32 H 1.09000 * 109.47661 * 59.99622 * 3 2 1 33 33 H 1.09003 * 109.47590 * 179.97438 * 3 2 1 34 34 H 0.96991 * 120.00040 * 359.97438 * 4 3 2 35 35 H 0.96998 * 120.00635 * 180.02562 * 8 7 5 36 36 H 0.97005 * 119.99894 * 354.05769 * 13 2 1 37 37 H 1.08999 * 109.46928 * 290.55905 * 18 16 14 38 38 H 1.09004 * 109.46678 * 50.53721 * 18 16 14 39 39 H 1.08999 * 109.58048 * 170.14344 * 19 18 16 40 40 H 1.09002 * 109.57935 * 290.40769 * 19 18 16 41 41 H 1.07999 * 126.65375 * 0.03732 * 21 20 19 42 42 H 1.07997 * 125.96709 * 179.97438 * 22 21 20 43 43 H 1.09002 * 109.77404 * 44.26791 * 25 24 23 44 44 H 1.08994 * 109.71727 * 283.58144 * 25 24 23 45 45 H 1.09003 * 115.55128 * 267.83276 * 26 2 1 46 46 H 1.08992 * 117.50049 * 359.97438 * 27 26 2 47 47 H 1.09001 * 117.49784 * 145.02251 * 27 26 2 48 48 H 1.08999 * 117.50285 * 214.97462 * 28 26 2 49 49 H 1.09002 * 117.50194 * 0.02562 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 7 1.5517 2.1330 -1.1963 5 6 1.8829 3.4439 -1.4132 6 1 2.5038 3.9688 -0.7024 7 6 1.4198 4.0984 -2.5464 8 7 1.7378 5.3584 -2.7548 9 14 0.3454 3.1907 -3.7756 10 1 -1.0822 3.3543 -3.4009 11 1 0.5677 3.7483 -5.1339 12 1 0.6966 1.7478 -3.7694 13 7 2.0183 -0.6907 -1.1961 14 6 3.3375 -0.7103 -1.4716 15 8 4.1118 -0.0894 -0.7745 16 6 3.8504 -1.5037 -2.6456 17 1 3.5936 -2.5548 -2.5148 18 6 5.3720 -1.3564 -2.7369 19 6 5.9201 -2.3415 -3.7752 20 7 5.1511 -2.1985 -5.0136 21 6 5.4896 -2.6305 -6.2614 22 6 4.4795 -2.2758 -7.0813 23 7 3.5494 -1.6437 -6.3473 24 6 3.9430 -1.5939 -5.1083 25 6 3.2117 -0.9786 -3.9374 26 6 2.0399 -0.7212 1.2493 27 6 2.9564 -1.9289 1.0432 28 6 1.5142 -2.1335 1.5137 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 3.1300 1.4425 0.0005 34 1 0.9944 1.6615 -1.8349 35 1 1.4139 5.8159 -3.5464 36 1 1.3922 -1.1339 -1.7899 37 1 5.6212 -0.3381 -3.0354 38 1 5.8165 -1.5689 -1.7646 39 1 6.9697 -2.1212 -3.9694 40 1 5.8242 -3.3599 -3.3988 41 1 6.3917 -3.1552 -6.5394 42 1 4.4274 -2.4667 -8.1430 43 1 2.1596 -1.2618 -3.9697 44 1 3.3023 0.1069 -3.9765 45 1 2.2317 -0.0856 2.1138 46 1 3.1958 -2.2098 0.0177 47 1 3.7509 -2.0879 1.7723 48 1 1.3607 -2.4272 2.5521 49 1 0.8054 -2.5491 0.7975 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715110912.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:08 Heat of formation + Delta-G solvation = 77.040169 kcal Electronic energy + Delta-G solvation = -30414.546406 eV Core-core repulsion = 26572.296619 eV Total energy + Delta-G solvation = -3842.249787 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.39788 -40.59494 -37.89833 -36.03875 -35.11845 -33.73918 -33.15639 -31.46444 -30.03043 -29.91628 -28.58195 -26.35365 -24.86783 -23.70060 -23.12335 -22.24612 -21.52174 -21.16350 -20.43325 -19.24314 -19.10058 -17.75079 -17.16495 -17.08820 -16.19061 -15.95421 -15.42995 -14.99037 -14.56991 -14.37544 -14.23226 -13.92238 -13.86827 -13.76915 -13.65353 -13.47334 -12.85232 -12.79628 -12.34145 -12.25293 -12.10227 -11.97475 -11.94243 -11.58841 -11.36987 -11.31724 -11.26753 -11.01677 -10.88824 -10.80602 -10.24199 -10.14497 -9.99301 -9.97390 -9.66509 -9.52399 -9.36959 -8.77803 -8.69849 -8.40649 -7.08843 -5.68642 -3.02172 1.96891 2.65156 2.79892 3.11504 3.22251 3.40199 3.41550 3.51185 3.87447 4.12590 4.31488 4.42048 4.43297 4.65095 4.67329 4.80921 4.88547 4.92700 4.97080 4.99362 5.02141 5.18774 5.29525 5.35335 5.42475 5.46984 5.55218 5.59616 5.63150 5.64181 5.66289 5.71784 5.84478 5.85542 5.97269 6.01933 6.08171 6.13705 6.21938 6.23394 6.39061 6.49655 6.70278 6.82612 7.07191 7.08608 7.72191 8.07641 8.09206 8.46118 8.50669 9.30344 10.02351 10.22872 11.50335 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.008669 B = 0.005441 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3229.031305 B = 5144.690635 C = 7337.131464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.196 3.804 3 C 0.144 3.856 4 N -0.749 5.749 5 C -0.233 4.233 6 H 0.088 0.912 7 C 0.002 3.998 8 N -0.937 5.937 9 Si 0.881 3.119 10 H -0.286 1.286 11 H -0.292 1.292 12 H -0.278 1.278 13 N -0.719 5.719 14 C 0.529 3.471 15 O -0.511 6.511 16 C -0.111 4.111 17 H 0.098 0.902 18 C -0.116 4.116 19 C 0.104 3.896 20 N -0.456 5.456 21 C -0.059 4.059 22 C -0.032 4.032 23 N -0.488 5.488 24 C 0.216 3.784 25 C -0.028 4.028 26 C -0.142 4.142 27 C -0.164 4.164 28 C -0.182 4.182 29 H 0.055 0.945 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.028 0.972 33 H 0.066 0.934 34 H 0.357 0.643 35 H 0.258 0.742 36 H 0.394 0.606 37 H 0.087 0.913 38 H 0.101 0.899 39 H 0.093 0.907 40 H 0.085 0.915 41 H 0.173 0.827 42 H 0.169 0.831 43 H 0.098 0.902 44 H 0.103 0.897 45 H 0.110 0.890 46 H 0.090 0.910 47 H 0.088 0.912 48 H 0.089 0.911 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.051 -22.979 1.843 23.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.110 3.890 3 C 0.016 3.984 4 N -0.395 5.395 5 C -0.363 4.363 6 H 0.106 0.894 7 C -0.193 4.193 8 N -0.585 5.585 9 Si 0.712 3.288 10 H -0.213 1.213 11 H -0.218 1.218 12 H -0.204 1.204 13 N -0.371 5.371 14 C 0.314 3.686 15 O -0.385 6.385 16 C -0.134 4.134 17 H 0.116 0.884 18 C -0.154 4.154 19 C -0.018 4.018 20 N -0.140 5.140 21 C -0.192 4.192 22 C -0.180 4.180 23 N -0.206 5.206 24 C -0.047 4.047 25 C -0.067 4.067 26 C -0.162 4.162 27 C -0.201 4.201 28 C -0.220 4.220 29 H 0.074 0.926 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.045 0.955 33 H 0.084 0.916 34 H 0.190 0.810 35 H 0.068 0.932 36 H 0.228 0.772 37 H 0.105 0.895 38 H 0.120 0.880 39 H 0.112 0.888 40 H 0.103 0.897 41 H 0.191 0.809 42 H 0.186 0.814 43 H 0.116 0.884 44 H 0.121 0.879 45 H 0.128 0.872 46 H 0.108 0.892 47 H 0.106 0.894 48 H 0.108 0.892 49 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 5.094 -22.003 2.228 22.694 hybrid contribution -0.238 -1.107 -1.182 1.637 sum 4.856 -23.109 1.046 23.637 Atomic orbital electron populations 1.22009 0.93289 1.01528 1.03871 1.20147 0.93638 0.92887 0.82350 1.21165 0.99816 0.87130 0.90252 1.42587 1.62068 1.11056 1.23801 1.19041 1.25956 0.85647 1.05683 0.89407 1.24631 1.00765 0.95808 0.98089 1.69690 1.50053 1.09760 1.29029 0.86611 0.81024 0.79281 0.81918 1.21297 1.21811 1.20391 1.46052 1.07413 1.56644 1.26972 1.19882 0.82613 0.81088 0.84981 1.90695 1.55878 1.41709 1.50225 1.21457 0.96855 1.00985 0.94059 0.88378 1.21730 0.93596 1.00590 0.99506 1.22039 0.96205 1.01071 0.82465 1.45450 1.17016 1.43264 1.08266 1.22532 1.03375 1.08992 0.84313 1.22369 0.92098 1.03591 0.99913 1.70092 1.29574 1.19753 1.01200 1.23179 0.85922 1.00738 0.94822 1.20194 0.98694 1.01661 0.86180 1.22549 1.03909 0.90238 0.99459 1.22912 0.92924 1.02396 1.01917 1.22972 0.97398 0.99930 1.01650 0.92616 0.90580 0.91497 0.95458 0.91647 0.80959 0.93211 0.77197 0.89482 0.88020 0.88838 0.89720 0.80947 0.81415 0.88404 0.87864 0.87150 0.89203 0.89398 0.89238 0.89137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 8.18 37.16 0.30 -1.63 16 2 C 0.20 2.82 0.55 -131.82 -0.07 2.75 16 3 C 0.14 2.83 4.81 -4.04 -0.02 2.81 16 4 N -0.75 -17.56 4.98 -59.91 -0.30 -17.86 16 5 C -0.23 -6.71 10.47 -15.06 -0.16 -6.86 16 6 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16 7 C 0.00 0.07 5.50 -17.43 -0.10 -0.03 16 8 N -0.94 -30.09 13.97 55.49 0.78 -29.32 16 9 Si 0.88 22.47 27.74 -169.99 -4.71 17.76 16 10 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 11 H -0.29 -7.69 7.11 56.52 0.40 -7.29 16 12 H -0.28 -6.49 6.52 56.52 0.37 -6.13 16 13 N -0.72 -9.44 4.10 -47.61 -0.20 -9.64 16 14 C 0.53 7.40 4.17 -10.99 -0.05 7.36 16 15 O -0.51 -8.88 12.16 5.55 0.07 -8.81 16 16 C -0.11 -1.24 2.55 -91.51 -0.23 -1.47 16 17 H 0.10 0.86 8.12 -51.93 -0.42 0.44 16 18 C -0.12 -1.20 4.67 -26.52 -0.12 -1.32 16 19 C 0.10 0.86 6.98 -3.93 -0.03 0.84 16 20 N -0.46 -5.24 3.13 -113.72 -0.36 -5.59 16 21 C -0.06 -0.63 11.64 -16.76 -0.20 -0.83 16 22 C -0.03 -0.41 11.87 -17.68 -0.21 -0.62 16 23 N -0.49 -7.82 11.24 -10.58 -0.12 -7.94 16 24 C 0.22 3.07 7.65 -155.18 -1.19 1.89 16 25 C -0.03 -0.38 5.45 -27.47 -0.15 -0.53 16 26 C -0.14 -1.79 4.89 -90.62 -0.44 -2.23 16 27 C -0.16 -1.88 8.62 -26.69 -0.23 -2.11 16 28 C -0.18 -1.83 9.68 -26.69 -0.26 -2.09 16 29 H 0.05 0.57 6.91 -51.93 -0.36 0.21 16 30 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.07 0.98 6.86 -51.93 -0.36 0.63 16 32 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 1.45 5.63 -51.93 -0.29 1.16 16 34 H 0.36 8.04 4.21 -40.82 -0.17 7.87 16 35 H 0.26 7.92 8.31 -40.82 -0.34 7.58 16 36 H 0.39 4.32 8.07 -40.82 -0.33 3.99 16 37 H 0.09 1.11 8.12 -51.93 -0.42 0.69 16 38 H 0.10 0.97 7.79 -51.93 -0.40 0.57 16 39 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.17 1.20 8.06 -52.49 -0.42 0.78 16 42 H 0.17 1.70 8.06 -52.49 -0.42 1.28 16 43 H 0.10 1.19 7.85 -51.93 -0.41 0.78 16 44 H 0.10 1.69 8.11 -51.93 -0.42 1.27 16 45 H 0.11 1.44 8.06 -51.93 -0.42 1.02 16 46 H 0.09 1.03 5.21 -51.93 -0.27 0.76 16 47 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 48 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 49 H 0.09 0.85 7.20 -51.93 -0.37 0.47 16 LS Contribution 379.23 15.07 5.71 5.71 Total: -1.00 -36.34 379.23 -9.89 -46.24 By element: Atomic # 1 Polarization: 21.16 SS G_CDS: -7.62 Total: 13.54 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: -3.15 Total: -4.08 kcal Atomic # 7 Polarization: -70.16 SS G_CDS: -0.19 Total: -70.35 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: 0.07 Total: -8.81 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -4.71 Total: 17.76 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -36.34 -9.89 -46.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715110912.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.276 kcal (2) G-P(sol) polarization free energy of solvation -36.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds