Wall clock time and date at job start Tue Mar 31 2020 19:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52992 * 109.47200 * 2 1 4 4 N 1.46505 * 109.47036 * 299.99697 * 3 2 1 5 5 C 1.36939 * 119.99891 * 180.02562 * 4 3 2 6 6 H 1.07997 * 120.00438 * 359.97438 * 5 4 3 7 7 C 1.38817 * 119.99879 * 180.02562 * 5 4 3 8 8 N 1.31611 * 120.00290 * 179.97438 * 7 5 4 9 9 Si 1.86797 * 119.99833 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47435 * 89.99926 * 9 7 5 11 11 H 1.48500 * 109.47152 * 210.00218 * 9 7 5 12 12 H 1.48506 * 109.47137 * 329.99800 * 9 7 5 13 13 N 1.46503 * 109.47264 * 239.99691 * 2 1 3 14 14 C 1.34772 * 119.99868 * 174.06068 * 13 2 1 15 15 O 1.21285 * 120.00372 * 355.57671 * 14 13 2 16 16 C 1.50702 * 120.00153 * 175.57279 * 14 13 2 17 17 H 1.08993 * 109.51002 * 300.00475 * 16 14 13 18 18 C 1.53141 * 109.51364 * 179.90143 * 16 14 13 19 19 C 1.53259 * 109.50449 * 170.54465 * 18 16 14 20 20 N 1.46466 * 108.80167 * 50.34641 * 19 18 16 21 21 C 1.36318 * 127.77922 * 162.91816 * 20 19 18 22 22 C 1.34850 * 106.69000 * 180.02562 * 21 20 19 23 23 N 1.34293 * 108.07577 * 359.97438 * 22 21 20 24 24 C 1.30097 * 109.20816 * 359.97158 * 23 22 21 25 25 C 1.51149 * 127.36872 * 180.13941 * 24 23 22 26 26 C 1.52998 * 109.46919 * 119.99820 * 2 1 3 27 27 C 1.53001 * 117.49993 * 122.15990 * 26 2 1 28 28 C 1.53000 * 117.50069 * 53.49656 * 26 2 1 29 29 H 1.09007 * 109.47459 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47593 * 300.00498 * 1 2 3 31 31 H 1.09001 * 109.47089 * 60.00123 * 1 2 3 32 32 H 1.09000 * 109.47661 * 59.99622 * 3 2 1 33 33 H 1.09003 * 109.47590 * 179.97438 * 3 2 1 34 34 H 0.96991 * 120.00040 * 359.97438 * 4 3 2 35 35 H 0.96998 * 120.00635 * 180.02562 * 8 7 5 36 36 H 0.97005 * 119.99894 * 354.05769 * 13 2 1 37 37 H 1.08999 * 109.46928 * 290.55905 * 18 16 14 38 38 H 1.09004 * 109.46678 * 50.53721 * 18 16 14 39 39 H 1.08999 * 109.58048 * 170.14344 * 19 18 16 40 40 H 1.09002 * 109.57935 * 290.40769 * 19 18 16 41 41 H 1.07999 * 126.65375 * 0.03732 * 21 20 19 42 42 H 1.07997 * 125.96709 * 179.97438 * 22 21 20 43 43 H 1.09002 * 109.77404 * 44.26791 * 25 24 23 44 44 H 1.08994 * 109.71727 * 283.58144 * 25 24 23 45 45 H 1.09003 * 115.55128 * 267.83276 * 26 2 1 46 46 H 1.08992 * 117.50049 * 359.97438 * 27 26 2 47 47 H 1.09001 * 117.49784 * 145.02251 * 27 26 2 48 48 H 1.08999 * 117.50285 * 214.97462 * 28 26 2 49 49 H 1.09002 * 117.50194 * 0.02562 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 7 1.5517 2.1330 -1.1963 5 6 1.8829 3.4439 -1.4132 6 1 2.5038 3.9688 -0.7024 7 6 1.4198 4.0984 -2.5464 8 7 1.7378 5.3584 -2.7548 9 14 0.3454 3.1907 -3.7756 10 1 -1.0822 3.3543 -3.4009 11 1 0.5677 3.7483 -5.1339 12 1 0.6966 1.7478 -3.7694 13 7 2.0183 -0.6907 -1.1961 14 6 3.3375 -0.7103 -1.4716 15 8 4.1118 -0.0894 -0.7745 16 6 3.8504 -1.5037 -2.6456 17 1 3.5936 -2.5548 -2.5148 18 6 5.3720 -1.3564 -2.7369 19 6 5.9201 -2.3415 -3.7752 20 7 5.1511 -2.1985 -5.0136 21 6 5.4896 -2.6305 -6.2614 22 6 4.4795 -2.2758 -7.0813 23 7 3.5494 -1.6437 -6.3473 24 6 3.9430 -1.5939 -5.1083 25 6 3.2117 -0.9786 -3.9374 26 6 2.0399 -0.7212 1.2493 27 6 2.9564 -1.9289 1.0432 28 6 1.5142 -2.1335 1.5137 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 3.1300 1.4425 0.0005 34 1 0.9944 1.6615 -1.8349 35 1 1.4139 5.8159 -3.5464 36 1 1.3922 -1.1339 -1.7899 37 1 5.6212 -0.3381 -3.0354 38 1 5.8165 -1.5689 -1.7646 39 1 6.9697 -2.1212 -3.9694 40 1 5.8242 -3.3599 -3.3988 41 1 6.3917 -3.1552 -6.5394 42 1 4.4274 -2.4667 -8.1430 43 1 2.1596 -1.2618 -3.9697 44 1 3.3023 0.1069 -3.9765 45 1 2.2317 -0.0856 2.1138 46 1 3.1958 -2.2098 0.0177 47 1 3.7509 -2.0879 1.7723 48 1 1.3607 -2.4272 2.5521 49 1 0.8054 -2.5491 0.7975 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715110912.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:07 Heat of formation + Delta-G solvation = 52.224080 kcal Electronic energy + Delta-G solvation = -30415.622512 eV Core-core repulsion = 26572.296619 eV Total energy + Delta-G solvation = -3843.325893 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -43.30108 -41.71266 -38.95103 -37.00384 -36.69658 -35.01482 -34.36694 -33.27862 -31.52334 -30.80809 -29.49036 -27.88518 -25.83962 -25.26389 -24.15016 -23.08072 -22.77680 -22.39414 -21.47270 -20.49270 -20.06299 -19.68871 -18.16494 -17.97403 -17.29121 -16.87856 -16.72293 -16.46552 -15.90670 -15.48438 -15.40442 -15.13757 -15.07626 -14.79494 -14.71065 -14.63850 -14.58786 -13.85360 -13.65104 -13.52835 -13.39954 -13.23674 -12.92161 -12.86246 -12.83804 -12.39148 -12.30345 -12.25671 -12.17627 -12.08727 -11.94101 -11.81981 -11.20403 -11.09694 -10.96039 -10.92712 -10.55335 -10.39564 -9.94402 -9.30655 -9.20015 -8.03271 -5.34104 1.08810 1.31518 1.37218 1.44186 1.69559 1.85669 2.14534 2.18522 2.45885 2.96739 3.20348 3.28805 3.49549 3.52091 3.55200 3.58819 3.95117 3.98746 4.00091 4.08379 4.10555 4.13863 4.24087 4.28886 4.39257 4.45628 4.53727 4.57208 4.59752 4.66393 4.83107 4.83291 4.85186 4.91335 4.92212 4.97117 5.09398 5.11299 5.23601 5.31024 5.33045 5.34769 5.36036 5.70632 5.77655 5.84881 6.20049 6.20791 6.66058 7.08751 7.14607 7.39394 7.84603 8.07102 9.19136 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.008669 B = 0.005441 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3229.031305 B = 5144.690635 C = 7337.131464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.206 3.794 3 C 0.142 3.858 4 N -0.743 5.743 5 C -0.225 4.225 6 H 0.046 0.954 7 C -0.064 4.064 8 N -0.987 5.987 9 Si 0.950 3.050 10 H -0.272 1.272 11 H -0.303 1.303 12 H -0.247 1.247 13 N -0.713 5.713 14 C 0.525 3.475 15 O -0.550 6.550 16 C -0.098 4.098 17 H 0.135 0.865 18 C -0.114 4.114 19 C 0.106 3.894 20 N -0.454 5.454 21 C -0.038 4.038 22 C -0.064 4.064 23 N -0.532 5.532 24 C 0.190 3.810 25 C -0.024 4.024 26 C -0.165 4.165 27 C -0.168 4.168 28 C -0.150 4.150 29 H 0.093 0.907 30 H 0.075 0.925 31 H 0.049 0.951 32 H 0.018 0.982 33 H 0.039 0.961 34 H 0.366 0.634 35 H 0.256 0.744 36 H 0.409 0.591 37 H 0.051 0.949 38 H 0.111 0.889 39 H 0.115 0.885 40 H 0.119 0.881 41 H 0.215 0.785 42 H 0.184 0.816 43 H 0.107 0.893 44 H 0.061 0.939 45 H 0.098 0.902 46 H 0.091 0.909 47 H 0.087 0.913 48 H 0.105 0.895 49 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.611 -27.739 1.579 28.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.119 3.881 3 C 0.015 3.985 4 N -0.389 5.389 5 C -0.356 4.356 6 H 0.064 0.936 7 C -0.255 4.255 8 N -0.638 5.638 9 Si 0.777 3.223 10 H -0.198 1.198 11 H -0.230 1.230 12 H -0.171 1.171 13 N -0.366 5.366 14 C 0.312 3.688 15 O -0.427 6.427 16 C -0.119 4.119 17 H 0.153 0.847 18 C -0.152 4.152 19 C -0.014 4.014 20 N -0.137 5.137 21 C -0.172 4.172 22 C -0.211 4.211 23 N -0.252 5.252 24 C -0.073 4.073 25 C -0.063 4.063 26 C -0.185 4.185 27 C -0.205 4.205 28 C -0.187 4.187 29 H 0.111 0.889 30 H 0.093 0.907 31 H 0.069 0.931 32 H 0.036 0.964 33 H 0.057 0.943 34 H 0.200 0.800 35 H 0.065 0.935 36 H 0.245 0.755 37 H 0.070 0.930 38 H 0.129 0.871 39 H 0.133 0.867 40 H 0.137 0.863 41 H 0.232 0.768 42 H 0.202 0.798 43 H 0.126 0.874 44 H 0.080 0.920 45 H 0.116 0.884 46 H 0.110 0.890 47 H 0.106 0.894 48 H 0.123 0.877 49 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 4.638 -26.827 2.001 27.299 hybrid contribution 0.036 0.449 -1.026 1.121 sum 4.674 -26.378 0.974 26.807 Atomic orbital electron populations 1.22008 0.91654 1.03714 1.03026 1.19895 0.94685 0.89514 0.83957 1.21229 0.98292 0.90788 0.88173 1.42464 1.61966 1.09315 1.25163 1.18970 1.24388 0.87692 1.04550 0.93639 1.25450 1.02937 0.96695 1.00439 1.69887 1.52132 1.11921 1.29884 0.85485 0.79318 0.79490 0.77998 1.19799 1.23018 1.17104 1.46019 1.07581 1.56133 1.26839 1.20417 0.82521 0.80612 0.85226 1.90691 1.56877 1.43327 1.51813 1.21417 0.97063 1.02124 0.91346 0.84737 1.21684 0.93277 0.99465 1.00788 1.22277 0.96575 1.02045 0.80523 1.45667 1.16250 1.42224 1.09528 1.23166 1.03649 1.07055 0.83312 1.22823 0.92628 1.04556 1.01106 1.69995 1.31642 1.21081 1.02458 1.23123 0.87373 1.02270 0.94517 1.20068 0.99705 0.99134 0.87379 1.22389 1.06512 0.91359 0.98191 1.22955 0.93980 1.01376 1.02178 1.23061 0.96358 0.96325 1.02973 0.88864 0.90650 0.93149 0.96428 0.94336 0.80009 0.93527 0.75519 0.92998 0.87060 0.86695 0.86305 0.76807 0.79848 0.87437 0.92012 0.88386 0.89042 0.89405 0.87686 0.87454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.43 8.18 71.98 0.59 -2.84 16 2 C 0.21 5.71 0.55 3.60 0.00 5.71 16 3 C 0.14 5.77 4.81 86.38 0.42 6.19 16 4 N -0.74 -35.56 4.98 -343.45 -1.71 -37.27 16 5 C -0.22 -13.51 10.47 84.03 0.88 -12.63 16 6 H 0.05 3.06 8.06 -2.91 -0.02 3.04 16 7 C -0.06 -3.95 5.50 84.86 0.47 -3.49 16 8 N -0.99 -66.13 13.97 21.65 0.30 -65.83 16 9 Si 0.95 47.17 27.74 68.60 1.90 49.07 16 10 H -0.27 -12.89 7.11 99.48 0.71 -12.19 16 11 H -0.30 -15.61 7.11 99.48 0.71 -14.91 16 12 H -0.25 -10.82 6.52 99.48 0.65 -10.17 16 13 N -0.71 -17.48 4.10 -422.94 -1.73 -19.21 16 14 C 0.53 14.26 4.17 87.66 0.37 14.62 16 15 O -0.55 -19.47 12.16 -3.05 -0.04 -19.50 16 16 C -0.10 -2.00 2.55 -11.37 -0.03 -2.03 16 17 H 0.13 1.82 8.12 -2.39 -0.02 1.80 16 18 C -0.11 -2.19 4.67 30.73 0.14 -2.05 16 19 C 0.11 1.38 6.98 86.47 0.60 1.98 16 20 N -0.45 -9.19 3.13 -513.70 -1.61 -10.80 16 21 C -0.04 -0.69 11.64 83.22 0.97 0.28 16 22 C -0.06 -1.54 11.87 83.54 0.99 -0.55 16 23 N -0.53 -16.73 11.24 -187.40 -2.11 -18.83 16 24 C 0.19 5.19 7.65 138.27 1.06 6.25 16 25 C -0.02 -0.61 5.45 30.12 0.16 -0.45 16 26 C -0.16 -3.91 4.89 -10.79 -0.05 -3.96 16 27 C -0.17 -3.43 8.62 30.62 0.26 -3.17 16 28 C -0.15 -2.44 9.68 30.62 0.30 -2.14 16 29 H 0.09 1.49 6.91 -2.38 -0.02 1.48 16 30 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.05 1.35 6.86 -2.39 -0.02 1.34 16 32 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.04 1.81 5.63 -2.39 -0.01 1.80 16 34 H 0.37 16.25 4.21 -92.72 -0.39 15.86 16 35 H 0.26 16.36 8.31 -92.71 -0.77 15.59 16 36 H 0.41 7.72 8.07 -92.70 -0.75 6.98 16 37 H 0.05 1.36 8.12 -2.39 -0.02 1.34 16 38 H 0.11 1.94 7.79 -2.38 -0.02 1.92 16 39 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.22 1.90 8.06 -2.91 -0.02 1.88 16 42 H 0.18 3.46 8.06 -2.91 -0.02 3.44 16 43 H 0.11 2.47 7.85 -2.39 -0.02 2.45 16 44 H 0.06 2.10 8.11 -2.39 -0.02 2.08 16 45 H 0.10 2.54 8.06 -2.39 -0.02 2.53 16 46 H 0.09 1.84 5.21 -2.39 -0.01 1.83 16 47 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 48 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 49 H 0.11 1.43 7.20 -2.39 -0.02 1.41 16 Total: -1.00 -85.53 379.23 1.91 -83.62 By element: Atomic # 1 Polarization: 37.26 SS G_CDS: -0.22 Total: 37.03 kcal Atomic # 6 Polarization: -5.40 SS G_CDS: 7.13 Total: 1.73 kcal Atomic # 7 Polarization: -145.09 SS G_CDS: -6.86 Total: -151.95 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: -0.04 Total: -19.50 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 1.90 Total: 49.07 kcal Total: -85.53 1.91 -83.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715110912.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.842 kcal (2) G-P(sol) polarization free energy of solvation -85.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds