Wall clock time and date at job start Tue Mar 31 2020 16:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.40078 * 126.04020 * 2 1 4 4 C 1.30833 * 108.20798 * 180.02562 * 3 2 1 5 5 C 1.39874 * 108.20069 * 0.23654 * 4 3 2 6 6 C 1.34946 * 126.03330 * 179.97438 * 2 1 3 7 7 C 1.50703 * 126.12850 * 0.02562 * 6 2 1 8 8 C 1.50699 * 109.46959 * 264.99816 * 7 6 2 9 9 O 1.21289 * 120.00033 * 359.97438 * 8 7 6 10 10 N 1.34770 * 120.00136 * 180.02562 * 8 7 6 11 11 C 1.46954 * 120.84659 * 359.71987 * 10 8 7 12 12 C 1.53612 * 108.77289 * 125.93407 * 11 10 8 13 13 C 1.53122 * 109.40986 * 54.30505 * 12 11 10 14 14 C 1.52859 * 109.34051 * 299.21892 * 13 12 11 15 15 H 1.08998 * 109.25448 * 302.48834 * 14 13 12 16 16 C 1.52772 * 109.56101 * 182.83043 * 14 13 12 17 17 N 1.46888 * 109.19243 * 293.08783 * 16 14 13 18 18 C 1.36933 * 120.78035 * 126.67100 * 17 16 14 19 19 H 1.08007 * 119.99585 * 332.29906 * 18 17 16 20 20 C 1.38810 * 120.00146 * 152.29515 * 18 17 16 21 21 N 1.31616 * 120.00428 * 342.52940 * 20 18 17 22 22 Si 1.86802 * 119.99821 * 162.52840 * 20 18 17 23 23 H 1.48506 * 109.46969 * 94.35691 * 22 20 18 24 24 H 1.48495 * 109.47256 * 214.35648 * 22 20 18 25 25 H 1.48504 * 109.47295 * 334.36008 * 22 20 18 26 26 C 1.46980 * 118.44711 * 306.64456 * 17 16 14 27 27 C 1.51479 * 108.79870 * 53.89732 * 26 17 16 28 28 C 1.47312 * 120.84939 * 179.97438 * 10 8 7 29 29 H 1.09004 * 110.06924 * 355.09758 * 28 10 8 30 30 H 1.09003 * 109.47133 * 89.97466 * 1 2 3 31 31 H 1.08996 * 109.47411 * 209.97661 * 1 2 3 32 32 H 1.09008 * 109.46985 * 329.97888 * 1 2 3 33 33 H 1.07999 * 125.90452 * 179.97438 * 4 3 2 34 34 H 1.07996 * 126.04038 * 179.72174 * 5 4 3 35 35 H 1.09002 * 109.47388 * 24.99625 * 7 6 2 36 36 H 1.09002 * 109.47124 * 144.99942 * 7 6 2 37 37 H 1.08996 * 109.53981 * 245.84459 * 11 10 8 38 38 H 1.08998 * 109.54184 * 6.11572 * 11 10 8 39 39 H 1.09000 * 109.61379 * 294.25916 * 12 11 10 40 40 H 1.08991 * 109.39256 * 174.21985 * 12 11 10 41 41 H 1.08997 * 109.49315 * 179.25698 * 13 12 11 42 42 H 1.09005 * 109.48835 * 59.17909 * 13 12 11 43 43 H 1.09005 * 109.52086 * 52.99972 * 16 14 13 44 44 H 1.09001 * 109.51789 * 173.11353 * 16 14 13 45 45 H 0.97001 * 120.00333 * 179.97438 * 21 20 18 46 46 H 1.09001 * 109.60894 * 174.04845 * 26 17 16 47 47 H 1.08997 * 109.61354 * 294.40010 * 26 17 16 48 48 H 1.08999 * 109.65738 * 184.61414 * 27 26 17 49 49 H 1.09003 * 108.37012 * 65.21299 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2892 1.1327 0.0000 4 6 3.5347 0.7320 -0.0006 5 6 3.5437 -0.6667 -0.0064 6 6 2.2589 -1.0913 0.0005 7 6 1.7972 -2.5259 0.0006 8 6 1.7607 -3.0417 1.4161 9 8 2.0788 -2.3160 2.3344 10 7 1.3757 -4.3097 1.6615 11 6 0.9817 -5.2034 0.5636 12 6 1.8179 -6.4892 0.6484 13 6 1.6732 -7.0991 2.0455 14 6 2.1853 -6.1048 3.0875 15 1 3.2218 -5.8520 2.8641 16 6 2.1087 -6.7351 4.4770 17 7 0.6992 -6.9306 4.8415 18 6 0.2429 -8.1578 5.2424 19 1 0.7306 -9.0559 4.8930 20 6 -0.8465 -8.2476 6.0980 21 7 -1.2265 -7.1961 6.7923 22 14 -1.7734 -9.8610 6.2638 23 1 -1.2360 -10.6241 7.4190 24 1 -3.2157 -9.5832 6.4820 25 1 -1.6051 -10.6585 5.0224 26 6 -0.2097 -5.7780 4.7664 27 6 -0.1200 -5.1752 3.3796 28 6 1.3337 -4.8334 3.0378 29 1 1.7282 -4.0917 3.7324 30 1 -0.3633 0.0005 -1.0277 31 1 -0.3634 -0.8901 0.5134 32 1 -0.3633 0.8899 0.5142 33 1 4.4055 1.3708 -0.0011 34 1 4.4210 -1.2964 -0.0125 35 1 0.7994 -2.5865 -0.4340 36 1 2.4875 -3.1297 -0.5885 37 1 -0.0769 -5.4468 0.6536 38 1 1.1640 -4.7103 -0.3912 39 1 2.8662 -6.2570 0.4603 40 1 1.4640 -7.2010 -0.0972 41 1 2.2555 -8.0186 2.1031 42 1 0.6234 -7.3202 2.2388 43 1 2.6196 -7.6980 4.4688 44 1 2.5854 -6.0761 5.2026 45 1 -1.9880 -7.2588 7.3899 46 1 -1.2310 -6.1042 4.9631 47 1 0.0845 -5.0314 5.5039 48 1 -0.7265 -4.2707 3.3330 49 1 -0.4997 -5.9037 2.6631 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021576310.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:58:08 Heat of formation + Delta-G solvation = 68.736533 kcal Electronic energy + Delta-G solvation = -29921.736977 eV Core-core repulsion = 26079.127117 eV Total energy + Delta-G solvation = -3842.609859 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.41681 -40.30713 -38.12965 -35.60978 -33.59576 -33.01537 -32.47496 -32.03815 -30.11995 -29.81907 -27.74749 -26.83288 -25.63216 -24.73579 -22.60296 -22.05359 -21.55203 -21.23256 -20.28148 -18.98833 -17.87226 -17.29726 -16.90866 -16.55535 -15.76119 -15.53901 -15.17373 -14.87628 -14.64036 -14.46703 -14.07909 -13.83062 -13.71513 -13.46429 -13.22112 -13.04172 -12.87411 -12.72961 -12.62413 -12.55056 -12.30028 -12.25463 -12.04150 -11.47655 -11.22976 -10.91283 -10.80410 -10.72826 -10.68045 -10.54980 -10.26199 -10.13519 -9.99009 -9.83123 -9.67778 -9.48358 -9.26670 -8.57450 -8.56342 -8.28913 -6.70781 -5.81940 -3.23749 1.72288 2.40770 2.65626 2.74379 3.15274 3.34464 3.42153 3.43446 4.25796 4.42538 4.46353 4.51335 4.72727 4.82829 4.95307 5.01603 5.06662 5.08796 5.10874 5.25187 5.33254 5.35449 5.42919 5.49080 5.57017 5.58930 5.65456 5.67991 5.90102 5.97836 6.03562 6.04130 6.14874 6.27680 6.33433 6.42511 6.49805 6.58487 6.60484 6.78410 6.79717 6.86237 6.90949 6.93318 7.31256 7.53118 7.62549 7.63910 7.76482 8.24594 8.41092 9.17368 9.81118 10.38487 11.26734 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.022657 B = 0.002890 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.499588 B = 9686.539727 C =10064.645530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.367 5.367 3 N -0.298 5.298 4 C 0.046 3.954 5 C -0.259 4.259 6 C 0.107 3.893 7 C -0.080 4.080 8 C 0.513 3.487 9 O -0.531 6.531 10 N -0.604 5.604 11 C 0.105 3.895 12 C -0.133 4.133 13 C -0.108 4.108 14 C -0.108 4.108 15 H 0.058 0.942 16 C 0.151 3.849 17 N -0.588 5.588 18 C -0.250 4.250 19 H 0.066 0.934 20 C 0.002 3.998 21 N -0.901 5.901 22 Si 0.900 3.100 23 H -0.288 1.288 24 H -0.290 1.290 25 H -0.279 1.279 26 C 0.172 3.828 27 C -0.145 4.145 28 C 0.156 3.844 29 H 0.094 0.906 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.182 0.818 34 H 0.145 0.855 35 H 0.101 0.899 36 H 0.118 0.882 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.061 0.939 40 H 0.070 0.930 41 H 0.059 0.941 42 H 0.081 0.919 43 H 0.057 0.943 44 H 0.019 0.981 45 H 0.254 0.746 46 H 0.092 0.908 47 H 0.017 0.983 48 H 0.048 0.952 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.816 7.964 -18.356 20.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.150 5.150 3 N -0.120 5.120 4 C -0.139 4.139 5 C -0.288 4.288 6 C -0.021 4.021 7 C -0.122 4.122 8 C 0.299 3.701 9 O -0.408 6.408 10 N -0.337 5.337 11 C -0.018 4.018 12 C -0.172 4.172 13 C -0.145 4.145 14 C -0.129 4.129 15 H 0.077 0.923 16 C 0.024 3.976 17 N -0.310 5.310 18 C -0.380 4.380 19 H 0.083 0.917 20 C -0.196 4.196 21 N -0.546 5.546 22 Si 0.730 3.270 23 H -0.215 1.215 24 H -0.216 1.216 25 H -0.205 1.205 26 C 0.046 3.954 27 C -0.185 4.185 28 C 0.055 3.945 29 H 0.112 0.888 30 H 0.093 0.907 31 H 0.103 0.897 32 H 0.109 0.891 33 H 0.199 0.801 34 H 0.162 0.838 35 H 0.120 0.880 36 H 0.136 0.864 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.079 0.921 40 H 0.088 0.912 41 H 0.078 0.922 42 H 0.100 0.900 43 H 0.076 0.924 44 H 0.036 0.964 45 H 0.064 0.936 46 H 0.110 0.890 47 H 0.035 0.965 48 H 0.067 0.933 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.896 9.377 -17.737 20.437 hybrid contribution -0.011 -1.553 0.135 1.559 sum 3.885 7.823 -17.602 19.650 Atomic orbital electron populations 1.21838 0.74609 1.04773 1.03005 1.48379 1.06391 1.03315 1.56908 1.77321 1.01891 1.07781 1.24969 1.23763 0.95186 0.94996 0.99964 1.21154 0.96071 0.95081 1.16506 1.20281 0.91412 0.88986 1.01438 1.20334 1.04197 0.90811 0.96846 1.20213 0.77721 0.81811 0.90332 1.90754 1.47957 1.56066 1.45991 1.48538 1.65524 1.10912 1.08763 1.21837 0.99613 0.91244 0.89130 1.22021 0.99879 0.96274 0.98982 1.21497 1.03439 0.97526 0.92074 1.21823 0.97742 0.94785 0.98527 0.92319 1.20808 0.87826 0.97852 0.91130 1.44035 1.02257 1.07500 1.77251 1.19137 1.12792 0.84156 1.21879 0.91657 1.25033 1.01345 0.97028 0.96235 1.70034 1.28047 1.29221 1.27252 0.86326 0.79356 0.83474 0.77874 1.21494 1.21626 1.20458 1.20439 0.97388 0.88115 0.89498 1.22276 0.94175 0.99735 1.02303 1.21355 0.97081 0.95141 0.80967 0.88789 0.90747 0.89719 0.89130 0.80077 0.83751 0.88033 0.86382 0.90958 0.90567 0.92058 0.91182 0.92249 0.90003 0.92434 0.96354 0.93628 0.89026 0.96507 0.93337 0.92012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.88 11.06 59.85 0.66 1.54 16 2 N -0.37 -4.64 4.01 -63.88 -0.26 -4.89 16 3 N -0.30 -4.15 12.57 30.62 0.39 -3.76 16 4 C 0.05 0.56 12.03 -17.36 -0.21 0.35 16 5 C -0.26 -3.15 10.72 -40.01 -0.43 -3.58 16 6 C 0.11 1.31 5.42 -82.26 -0.45 0.86 16 7 C -0.08 -0.78 4.16 -29.03 -0.12 -0.90 16 8 C 0.51 7.19 7.70 -10.99 -0.08 7.11 16 9 O -0.53 -9.93 15.49 5.55 0.09 -9.85 16 10 N -0.60 -8.19 2.66 -164.59 -0.44 -8.63 16 11 C 0.10 1.07 5.89 -3.48 -0.02 1.05 16 12 C -0.13 -1.43 6.10 -26.35 -0.16 -1.59 16 13 C -0.11 -1.57 4.81 -26.74 -0.13 -1.70 16 14 C -0.11 -1.78 2.50 -90.76 -0.23 -2.00 16 15 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 16 C 0.15 3.04 5.88 -3.95 -0.02 3.02 16 17 N -0.59 -13.93 2.57 -173.59 -0.45 -14.38 16 18 C -0.25 -6.53 9.60 -15.06 -0.14 -6.67 16 19 H 0.07 1.67 7.89 -52.48 -0.41 1.26 16 20 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 21 N -0.90 -25.60 11.19 55.49 0.62 -24.98 16 22 Si 0.90 21.04 29.59 -169.99 -5.03 16.01 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 C 0.17 3.96 5.29 -4.55 -0.02 3.94 16 27 C -0.14 -2.66 4.90 -27.40 -0.13 -2.79 16 28 C 0.16 2.65 2.69 -67.33 -0.18 2.47 16 29 H 0.09 1.85 7.06 -51.93 -0.37 1.49 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.70 7.54 -51.93 -0.39 0.31 16 32 H 0.09 0.77 8.14 -51.92 -0.42 0.35 16 33 H 0.18 1.55 8.06 -52.49 -0.42 1.12 16 34 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 35 H 0.10 0.73 7.28 -51.93 -0.38 0.36 16 36 H 0.12 0.86 7.72 -51.93 -0.40 0.46 16 37 H 0.07 0.75 7.23 -51.93 -0.38 0.38 16 38 H 0.08 0.53 5.96 -51.93 -0.31 0.22 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.08 1.39 6.09 -51.93 -0.32 1.08 16 43 H 0.06 1.13 7.93 -51.93 -0.41 0.72 16 44 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 46 H 0.09 2.37 6.02 -51.93 -0.31 2.05 16 47 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 49 H 0.06 1.10 5.31 -51.93 -0.28 0.83 16 LS Contribution 376.79 15.07 5.68 5.68 Total: -1.00 -33.48 376.79 -8.89 -42.37 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -7.74 Total: 1.36 kcal Atomic # 6 Polarization: 2.82 SS G_CDS: -1.76 Total: 1.06 kcal Atomic # 7 Polarization: -56.50 SS G_CDS: -0.13 Total: -56.64 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.09 Total: -9.85 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.03 Total: 16.01 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.48 -8.89 -42.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021576310.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.111 kcal (2) G-P(sol) polarization free energy of solvation -33.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds