Wall clock time and date at job start Tue Mar 31 2020 17:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36880 * 126.40165 * 2 1 4 4 C 1.34662 * 106.81961 * 180.02562 * 3 2 1 5 5 N 1.34133 * 108.02327 * 359.78200 * 4 3 2 6 6 C 1.30501 * 109.24909 * 0.36962 * 5 4 3 7 7 C 1.50706 * 125.64564 * 179.89728 * 6 5 4 8 8 C 1.53003 * 109.46852 * 269.68917 * 7 6 5 9 9 C 1.50697 * 109.46872 * 180.02562 * 8 7 6 10 10 O 1.21281 * 120.00133 * 0.02562 * 9 8 7 11 11 N 1.34780 * 120.00119 * 180.02562 * 9 8 7 12 12 C 1.47221 * 126.69808 * 359.97438 * 11 9 8 13 13 C 1.53774 * 106.37683 * 148.75789 * 12 11 9 14 14 H 1.09002 * 111.70443 * 256.37004 * 13 12 11 15 15 C 1.54324 * 109.06351 * 132.42830 * 13 12 11 16 16 C 1.55050 * 103.93677 * 222.03287 * 15 13 12 17 17 C 1.55054 * 102.11469 * 40.04898 * 16 15 13 18 18 H 1.09005 * 110.53168 * 78.70008 * 17 16 15 19 19 N 1.46496 * 110.54042 * 201.33652 * 17 16 15 20 20 C 1.36945 * 119.99718 * 271.63500 * 19 17 16 21 21 H 1.07997 * 119.99756 * 359.97438 * 20 19 17 22 22 C 1.38805 * 119.99878 * 179.97438 * 20 19 17 23 23 N 1.31624 * 120.00257 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99929 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47187 * 179.97438 * 24 22 20 26 26 H 1.48494 * 109.47141 * 300.00154 * 24 22 20 27 27 H 1.48498 * 109.47018 * 60.00200 * 24 22 20 28 28 C 1.54327 * 104.06034 * 320.02215 * 17 16 15 29 29 H 1.09009 * 111.68644 * 262.71707 * 28 17 16 30 30 C 1.47203 * 126.70457 * 180.02562 * 11 9 8 31 31 H 1.08994 * 109.46620 * 269.97527 * 1 2 3 32 32 H 1.08999 * 109.46449 * 29.97109 * 1 2 3 33 33 H 1.08999 * 109.47058 * 149.96950 * 1 2 3 34 34 H 1.07999 * 126.59130 * 359.97438 * 3 2 1 35 35 H 1.08007 * 125.99385 * 180.02562 * 4 3 2 36 36 H 1.08996 * 109.47205 * 149.68892 * 7 6 5 37 37 H 1.09000 * 109.47305 * 29.68633 * 7 6 5 38 38 H 1.09003 * 109.46886 * 60.00094 * 8 7 6 39 39 H 1.09000 * 109.46934 * 299.99943 * 8 7 6 40 40 H 1.09000 * 110.07398 * 29.52263 * 12 11 9 41 41 H 1.09005 * 110.11608 * 268.01210 * 12 11 9 42 42 H 1.08996 * 110.53634 * 103.41611 * 15 13 12 43 43 H 1.09002 * 110.65274 * 340.69678 * 15 13 12 44 44 H 1.09006 * 110.90190 * 281.85442 * 16 15 13 45 45 H 1.08997 * 110.93778 * 158.27065 * 16 15 13 46 46 H 0.96996 * 120.00499 * 91.63230 * 19 17 16 47 47 H 0.97001 * 119.99885 * 179.97438 * 23 22 20 48 48 H 1.08999 * 110.07665 * 330.47069 * 30 11 9 49 49 H 1.09003 * 110.07748 * 92.01830 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2773 1.1017 0.0000 4 6 3.5461 0.6504 -0.0006 5 7 3.5096 -0.6904 0.0039 6 6 2.2663 -1.0870 -0.0007 7 6 1.8017 -2.5207 -0.0001 8 6 1.6432 -3.0060 -1.4424 9 6 1.1781 -4.4393 -1.4419 10 8 0.9913 -5.0159 -0.3913 11 7 0.9697 -5.0807 -2.6088 12 6 1.1485 -4.5270 -3.9612 13 6 1.5717 -5.7021 -4.8583 14 1 2.6387 -5.6764 -5.0797 15 6 0.7215 -5.6847 -6.1461 16 6 0.3672 -7.1759 -6.3799 17 6 0.0773 -7.6712 -4.9395 18 1 -0.9195 -7.3641 -4.6229 19 7 0.2146 -9.1275 -4.8593 20 6 -0.8603 -9.9323 -5.1278 21 1 -1.8093 -9.4934 -5.3983 22 6 -0.7302 -11.3122 -5.0524 23 7 0.4262 -11.8472 -4.7223 24 14 -2.1967 -12.4101 -5.4180 25 1 -1.7990 -13.8330 -5.2694 26 1 -3.2955 -12.1009 -4.4682 27 1 -2.6612 -12.1690 -6.8077 28 6 1.1557 -6.9777 -4.0805 29 1 2.0065 -7.6336 -3.8954 30 6 0.5179 -6.4712 -2.7801 31 1 -0.3632 -0.0004 1.0276 32 1 -0.3632 0.8903 -0.5134 33 1 -0.3633 -0.8897 -0.5143 34 1 1.9614 2.1345 -0.0004 35 1 4.4370 1.2610 -0.0003 36 1 0.8436 -2.5919 0.5146 37 1 2.5368 -3.1406 0.5131 38 1 2.6015 -2.9347 -1.9571 39 1 0.9081 -2.3860 -1.9556 40 1 1.9263 -3.7634 -3.9530 41 1 0.2109 -4.1017 -4.3191 42 1 1.3016 -5.2939 -6.9820 43 1 -0.1837 -5.0949 -6.0013 44 1 1.2111 -7.7129 -6.8132 45 1 -0.5173 -7.2720 -7.0096 46 1 1.0668 -9.5217 -4.6161 47 1 0.5170 -12.8114 -4.6692 48 1 0.8509 -7.0791 -1.9389 49 1 -0.5687 -6.5045 -2.8595 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026319721.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:51:01 Heat of formation + Delta-G solvation = 34.629650 kcal Electronic energy + Delta-G solvation = -28245.296637 eV Core-core repulsion = 24401.207792 eV Total energy + Delta-G solvation = -3844.088845 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 4.39 seconds Orbital eigenvalues (eV) -42.39232 -40.38146 -38.59386 -35.23224 -34.40700 -33.89611 -33.38050 -31.05318 -30.08046 -28.85719 -28.45401 -27.39357 -25.48913 -24.76910 -23.18504 -22.69927 -21.68181 -20.31941 -19.97260 -19.22342 -18.95680 -17.63932 -17.16293 -16.80697 -16.24221 -16.07220 -15.60682 -15.28517 -14.89328 -14.43179 -14.27746 -14.03617 -13.79320 -13.53119 -13.42704 -13.23556 -13.11785 -13.01872 -12.85974 -12.53542 -12.46249 -12.20681 -11.87800 -11.67127 -11.43068 -11.17172 -10.89854 -10.77799 -10.72130 -10.40137 -10.31394 -10.24034 -10.23776 -9.97956 -9.93065 -9.80843 -9.66055 -8.88402 -8.67277 -8.64623 -6.96144 -5.77626 -3.06653 1.69632 2.42932 2.59555 2.80279 3.05169 3.43335 3.47953 3.48955 4.05775 4.28441 4.41110 4.51478 4.57042 4.61222 4.62773 4.72069 4.74931 4.86775 4.93478 4.94395 5.08779 5.21464 5.27676 5.32256 5.42476 5.43654 5.55393 5.59698 5.62511 5.75528 5.78063 5.84575 5.92525 5.95955 5.97324 6.04995 6.18470 6.24254 6.31931 6.40554 6.46142 6.52909 6.63658 6.77486 6.83740 7.01935 7.56836 7.68582 7.83194 8.13604 8.40814 9.51869 10.09204 10.43155 11.44753 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.024020 B = 0.002113 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.391637 B =13248.991403 C =13646.283378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.459 5.459 3 C -0.062 4.062 4 C -0.028 4.028 5 N -0.487 5.487 6 C 0.210 3.790 7 C -0.019 4.019 8 C -0.129 4.129 9 C 0.529 3.471 10 O -0.542 6.542 11 N -0.617 5.617 12 C 0.104 3.896 13 C -0.100 4.100 14 H 0.086 0.914 15 C -0.117 4.117 16 C -0.143 4.143 17 C 0.184 3.816 18 H 0.056 0.944 19 N -0.720 5.720 20 C -0.241 4.241 21 H 0.069 0.931 22 C -0.012 4.012 23 N -0.932 5.932 24 Si 0.906 3.094 25 H -0.291 1.291 26 H -0.286 1.286 27 H -0.286 1.286 28 C -0.105 4.105 29 H 0.090 0.910 30 C 0.115 3.885 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.174 0.826 35 H 0.170 0.830 36 H 0.086 0.914 37 H 0.105 0.895 38 H 0.101 0.899 39 H 0.088 0.912 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.059 0.941 43 H 0.064 0.936 44 H 0.066 0.934 45 H 0.060 0.940 46 H 0.384 0.616 47 H 0.256 0.744 48 H 0.079 0.921 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.442 27.926 4.740 28.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.142 5.142 3 C -0.195 4.195 4 C -0.176 4.176 5 N -0.206 5.206 6 C -0.053 4.053 7 C -0.058 4.058 8 C -0.170 4.170 9 C 0.318 3.682 10 O -0.419 6.419 11 N -0.350 5.350 12 C -0.019 4.019 13 C -0.120 4.120 14 H 0.105 0.895 15 C -0.155 4.155 16 C -0.184 4.184 17 C 0.073 3.927 18 H 0.074 0.926 19 N -0.360 5.360 20 C -0.372 4.372 21 H 0.087 0.913 22 C -0.209 4.209 23 N -0.580 5.580 24 Si 0.737 3.263 25 H -0.217 1.217 26 H -0.213 1.213 27 H -0.213 1.213 28 C -0.126 4.126 29 H 0.108 0.892 30 C -0.006 4.006 31 H 0.097 0.903 32 H 0.105 0.895 33 H 0.107 0.893 34 H 0.191 0.809 35 H 0.187 0.813 36 H 0.105 0.895 37 H 0.123 0.877 38 H 0.119 0.881 39 H 0.106 0.894 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.078 0.922 43 H 0.082 0.918 44 H 0.085 0.915 45 H 0.078 0.922 46 H 0.218 0.782 47 H 0.066 0.934 48 H 0.097 0.903 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.701 27.053 5.398 27.639 hybrid contribution -1.198 -0.031 -0.311 1.238 sum 0.504 27.023 5.087 27.502 Atomic orbital electron populations 1.22094 0.76608 1.04831 1.03895 1.45337 1.07618 1.06678 1.54552 1.22701 0.91426 0.92515 1.12836 1.22328 0.96445 0.91209 1.07662 1.70286 1.18471 1.12018 1.19803 1.23276 0.85790 0.90811 1.05395 1.19724 1.03288 0.86351 0.96484 1.21578 1.03783 0.93287 0.98322 1.20130 0.77436 0.88243 0.82390 1.90730 1.52306 1.68476 1.30412 1.48681 1.66415 1.14429 1.05476 1.22341 1.00917 0.96740 0.81912 1.22608 1.00301 0.93826 0.95236 0.89535 1.22497 0.98583 0.98585 0.95830 1.23299 1.01233 0.93243 1.00585 1.21235 0.94893 0.85284 0.91261 0.92605 1.42435 1.12252 0.98834 1.82521 1.19173 0.90839 0.88013 1.39164 0.91263 1.24745 0.96930 0.96753 1.02433 1.69648 1.23089 1.10689 1.54556 0.86283 0.82018 0.79936 0.78031 1.21718 1.21267 1.21305 1.22863 0.99807 0.95931 0.93967 0.89199 1.22105 0.99032 0.80955 0.98551 0.90295 0.89459 0.89272 0.80923 0.81323 0.89543 0.87693 0.88098 0.89361 0.91006 0.91137 0.92196 0.91753 0.91520 0.92160 0.78154 0.93428 0.90258 0.91034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.29 10.79 59.85 0.65 0.94 16 2 N -0.46 -3.67 3.15 -121.28 -0.38 -4.05 16 3 C -0.06 -0.47 11.58 -16.56 -0.19 -0.67 16 4 C -0.03 -0.27 11.87 -17.81 -0.21 -0.48 16 5 N -0.49 -5.99 11.25 -10.81 -0.12 -6.12 16 6 C 0.21 2.18 7.16 -155.41 -1.11 1.07 16 7 C -0.02 -0.19 4.60 -27.88 -0.13 -0.32 16 8 C -0.13 -1.22 4.66 -27.88 -0.13 -1.35 16 9 C 0.53 7.02 7.88 -10.99 -0.09 6.93 16 10 O -0.54 -9.23 16.21 5.56 0.09 -9.14 16 11 N -0.62 -8.04 3.32 -171.79 -0.57 -8.61 16 12 C 0.10 1.07 6.38 -3.25 -0.02 1.05 16 13 C -0.10 -1.20 3.92 -88.42 -0.35 -1.55 16 14 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 15 C -0.12 -1.39 6.34 -24.95 -0.16 -1.55 16 16 C -0.14 -2.32 6.60 -24.56 -0.16 -2.48 16 17 C 0.18 3.41 3.02 -66.15 -0.20 3.21 16 18 H 0.06 1.06 7.15 -51.93 -0.37 0.69 16 19 N -0.72 -17.37 5.22 -51.71 -0.27 -17.64 16 20 C -0.24 -6.51 9.97 -15.06 -0.15 -6.66 16 21 H 0.07 1.82 7.83 -52.49 -0.41 1.40 16 22 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 23 N -0.93 -27.87 13.06 55.49 0.72 -27.15 16 24 Si 0.91 22.20 29.55 -169.99 -5.02 17.18 16 25 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 26 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 27 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 28 C -0.11 -1.64 3.59 -88.59 -0.32 -1.96 16 29 H 0.09 1.53 7.80 -51.92 -0.40 1.12 16 30 C 0.12 1.79 6.53 -3.43 -0.02 1.77 16 31 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.09 0.35 7.66 -51.93 -0.40 -0.05 16 34 H 0.17 0.73 8.06 -52.49 -0.42 0.31 16 35 H 0.17 1.22 8.06 -52.48 -0.42 0.79 16 36 H 0.09 0.79 7.66 -51.93 -0.40 0.39 16 37 H 0.10 1.20 8.10 -51.93 -0.42 0.78 16 38 H 0.10 0.94 7.86 -51.93 -0.41 0.53 16 39 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.60 7.31 -51.93 -0.38 0.22 16 41 H 0.07 0.65 7.13 -51.93 -0.37 0.28 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.06 0.70 7.19 -51.93 -0.37 0.33 16 44 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 45 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 46 H 0.38 9.94 7.59 -40.82 -0.31 9.63 16 47 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 48 H 0.08 1.39 7.92 -51.93 -0.41 0.98 16 49 H 0.07 1.14 7.13 -51.93 -0.37 0.77 16 LS Contribution 393.22 15.07 5.93 5.93 Total: -1.00 -34.38 393.22 -10.28 -44.66 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -7.97 Total: 7.44 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: -2.69 Total: -2.49 kcal Atomic # 7 Polarization: -62.95 SS G_CDS: -0.62 Total: -63.57 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: 0.09 Total: -9.14 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.38 -10.28 -44.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026319721.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.287 kcal (2) G-P(sol) polarization free energy of solvation -34.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.40 seconds