Wall clock time and date at job start Tue Mar 31 2020 18:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35048 * 126.39599 * 2 1 4 4 N 1.30504 * 108.69840 * 180.26601 * 3 2 1 5 5 C 1.34126 * 109.25528 * 359.76865 * 4 3 2 6 6 C 1.34677 * 108.02248 * 359.97438 * 5 4 3 7 7 C 1.50696 * 126.59086 * 179.97438 * 6 5 4 8 8 H 1.09004 * 115.55983 * 179.33722 * 7 6 5 9 9 C 1.52997 * 117.49898 * 33.65300 * 7 6 5 10 10 C 1.53002 * 117.50154 * 325.02740 * 7 6 5 11 11 H 1.09000 * 117.49885 * 359.97438 * 10 7 6 12 12 C 1.50697 * 117.49978 * 214.98055 * 10 7 6 13 13 O 1.21286 * 119.99996 * 0.02562 * 12 10 7 14 14 N 1.34768 * 120.00221 * 180.02562 * 12 10 7 15 15 C 1.46495 * 120.00327 * 180.02562 * 14 12 10 16 16 C 1.53001 * 109.47575 * 175.14164 * 15 14 12 17 17 N 1.46505 * 110.43286 * 57.40571 * 16 15 14 18 18 C 1.36937 * 119.99898 * 61.99034 * 17 16 15 19 19 H 1.07999 * 119.99869 * 353.85177 * 18 17 16 20 20 C 1.38810 * 119.99799 * 173.84857 * 18 17 16 21 21 N 1.31618 * 120.00392 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99781 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47420 * 179.97438 * 22 20 18 24 24 H 1.48499 * 109.47436 * 300.00138 * 22 20 18 25 25 H 1.48498 * 109.47252 * 59.99940 * 22 20 18 26 26 C 1.54892 * 110.60378 * 180.02562 * 16 15 14 27 27 C 1.54893 * 102.74678 * 156.67561 * 26 16 15 28 28 C 1.54262 * 104.19509 * 322.05794 * 27 26 16 29 29 C 1.53868 * 106.60099 * 23.61194 * 28 27 26 30 30 H 1.08993 * 109.47537 * 270.12484 * 1 2 3 31 31 H 1.09008 * 109.47078 * 30.12230 * 1 2 3 32 32 H 1.08996 * 109.46960 * 150.11960 * 1 2 3 33 33 H 1.08003 * 125.65146 * 359.97438 * 3 2 1 34 34 H 1.08002 * 125.99289 * 180.02562 * 5 4 3 35 35 H 1.09001 * 117.49959 * 145.01819 * 9 7 6 36 36 H 1.08998 * 117.50455 * 359.97438 * 9 7 6 37 37 H 0.97006 * 120.00137 * 359.97438 * 14 12 10 38 38 H 1.08992 * 109.47319 * 55.14158 * 15 14 12 39 39 H 1.09002 * 109.47206 * 295.13906 * 15 14 12 40 40 H 0.97001 * 120.00018 * 241.98415 * 17 16 15 41 41 H 0.97004 * 119.99662 * 0.02562 * 21 20 18 42 42 H 1.09004 * 110.75350 * 274.99143 * 26 16 15 43 43 H 1.08995 * 110.75462 * 38.35963 * 26 16 15 44 44 H 1.09002 * 110.48138 * 203.37804 * 27 26 16 45 45 H 1.08998 * 110.59374 * 80.79645 * 27 26 16 46 46 H 1.09000 * 110.03030 * 264.32479 * 28 27 26 47 47 H 1.09008 * 110.06862 * 142.91730 * 28 27 26 48 48 H 1.09003 * 110.03552 * 240.71095 * 29 28 27 49 49 H 1.09003 * 110.03360 * 119.28103 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2663 1.0870 0.0000 4 7 3.5096 0.6903 -0.0057 5 6 3.5461 -0.6504 -0.0045 6 6 2.2772 -1.1018 0.0029 7 6 1.8364 -2.5428 0.0063 8 1 0.7586 -2.7049 0.0238 9 6 2.7141 -3.5483 0.7542 10 6 2.6888 -3.5443 -0.7756 11 1 3.5682 -3.1608 -1.2929 12 6 1.9740 -4.6792 -1.4627 13 8 0.7673 -4.7723 -1.3837 14 7 2.6757 -5.5907 -2.1650 15 6 1.9808 -6.6936 -2.8334 16 6 2.9847 -7.5070 -3.6529 17 7 4.0612 -8.0063 -2.7936 18 6 3.7744 -8.8641 -1.7654 19 1 2.7470 -9.0947 -1.5252 20 6 4.8041 -9.4372 -1.0320 21 7 6.0562 -9.1566 -1.3251 22 14 4.4129 -10.6068 0.3710 23 1 5.6778 -11.0787 0.9895 24 1 3.5959 -9.9011 1.3906 25 1 3.6538 -11.7710 -0.1521 26 6 2.2765 -8.6816 -4.3724 27 6 3.2294 -8.9819 -5.5560 28 6 3.7177 -7.5910 -6.0107 29 6 3.5622 -6.6533 -4.8007 30 1 -0.3634 0.0022 1.0276 31 1 -0.3634 0.8889 -0.5158 32 1 -0.3633 -0.8910 -0.5120 33 1 1.9334 2.1145 -0.0004 34 1 4.4368 -1.2611 -0.0078 35 1 2.2139 -4.3719 1.2637 36 1 3.6107 -3.1677 1.2434 37 1 3.6407 -5.5160 -2.2285 38 1 1.2130 -6.2919 -3.4945 39 1 1.5164 -7.3367 -2.0858 40 1 4.9770 -7.7293 -2.9530 41 1 6.2594 -8.5490 -2.0534 42 1 2.1952 -9.5458 -3.7130 43 1 1.2946 -8.3770 -4.7346 44 1 2.6908 -9.4796 -6.3625 45 1 4.0699 -9.5924 -5.2262 46 1 3.1078 -7.2341 -6.8405 47 1 4.7642 -7.6419 -6.3116 48 1 2.8769 -5.8411 -5.0433 49 1 4.5333 -6.2498 -4.5138 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753668716.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:56 Heat of formation + Delta-G solvation = 54.487082 kcal Electronic energy + Delta-G solvation = -28778.376233 eV Core-core repulsion = 24935.148471 eV Total energy + Delta-G solvation = -3843.227762 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.29916 -39.77538 -38.45070 -36.46820 -34.22110 -34.16387 -33.58844 -30.57085 -29.55171 -28.32457 -27.91902 -27.21961 -25.22261 -23.63898 -23.38664 -22.77892 -21.54543 -20.33722 -19.76338 -19.48459 -18.86058 -17.62893 -17.15413 -16.73576 -15.93068 -15.85941 -15.38798 -15.06330 -14.79498 -14.62515 -14.18875 -14.07304 -13.79820 -13.71271 -13.56955 -13.23248 -13.02034 -12.94923 -12.71748 -12.45099 -12.08152 -11.90693 -11.31044 -11.19992 -11.03205 -10.82125 -10.71099 -10.67223 -10.61761 -10.47374 -10.17129 -10.12052 -10.04258 -9.99530 -9.73065 -9.59277 -9.17238 -8.93712 -8.54044 -8.37241 -7.10957 -6.13292 -3.15426 1.73428 2.52247 2.76110 2.99599 3.49347 3.50974 3.51885 3.69386 3.97515 4.36793 4.42619 4.51821 4.62365 4.66653 4.80356 4.85389 4.96891 5.02830 5.06369 5.11344 5.11792 5.15616 5.25564 5.46963 5.49036 5.59671 5.65909 5.72403 5.84925 5.86013 5.90374 5.94585 6.06691 6.13722 6.18900 6.23063 6.28081 6.37019 6.48501 6.53747 6.54918 6.69218 6.76621 6.90527 6.98005 7.00138 7.79479 7.89592 7.95463 8.57886 8.71464 9.15685 10.01898 10.16547 11.34094 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.012142 B = 0.003015 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2305.419260 B = 9286.100822 C =10424.434174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.458 5.458 3 C 0.176 3.824 4 N -0.492 5.492 5 C -0.025 4.025 6 C 0.014 3.986 7 C -0.060 4.060 8 H 0.122 0.878 9 C -0.128 4.128 10 C -0.169 4.169 11 H 0.126 0.874 12 C 0.539 3.461 13 O -0.559 6.559 14 N -0.695 5.695 15 C 0.120 3.880 16 C 0.193 3.807 17 N -0.719 5.719 18 C -0.324 4.324 19 H 0.063 0.937 20 C -0.039 4.039 21 N -0.942 5.942 22 Si 1.074 2.926 23 H -0.286 1.286 24 H -0.296 1.296 25 H -0.296 1.296 26 C -0.128 4.128 27 C -0.113 4.113 28 C -0.119 4.119 29 C -0.124 4.124 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.205 0.795 34 H 0.169 0.831 35 H 0.108 0.892 36 H 0.110 0.890 37 H 0.403 0.597 38 H 0.055 0.945 39 H 0.064 0.936 40 H 0.367 0.633 41 H 0.255 0.745 42 H 0.077 0.923 43 H 0.052 0.948 44 H 0.051 0.949 45 H 0.069 0.931 46 H 0.054 0.946 47 H 0.057 0.943 48 H 0.062 0.938 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.663 15.652 -1.790 18.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.141 5.141 3 C -0.106 4.106 4 N -0.210 5.210 5 C -0.173 4.173 6 C -0.100 4.100 7 C -0.079 4.079 8 H 0.140 0.860 9 C -0.166 4.166 10 C -0.190 4.190 11 H 0.144 0.856 12 C 0.324 3.676 13 O -0.439 6.439 14 N -0.343 5.343 15 C -0.006 4.006 16 C 0.101 3.899 17 N -0.362 5.362 18 C -0.455 4.455 19 H 0.081 0.919 20 C -0.237 4.237 21 N -0.587 5.587 22 Si 0.905 3.095 23 H -0.211 1.211 24 H -0.223 1.223 25 H -0.224 1.224 26 C -0.168 4.168 27 C -0.150 4.150 28 C -0.156 4.156 29 C -0.162 4.162 30 H 0.096 0.904 31 H 0.106 0.894 32 H 0.107 0.893 33 H 0.221 0.779 34 H 0.186 0.814 35 H 0.127 0.873 36 H 0.128 0.872 37 H 0.238 0.762 38 H 0.073 0.927 39 H 0.083 0.917 40 H 0.202 0.798 41 H 0.066 0.934 42 H 0.095 0.905 43 H 0.071 0.929 44 H 0.070 0.930 45 H 0.087 0.913 46 H 0.073 0.927 47 H 0.075 0.925 48 H 0.081 0.919 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.508 15.051 -0.513 17.810 hybrid contribution -0.741 0.535 -1.316 1.603 sum -10.249 15.586 -1.829 18.743 Atomic orbital electron populations 1.22083 0.76550 1.04953 1.03748 1.45209 1.07672 1.06528 1.54655 1.24913 0.85663 0.93313 1.06707 1.70281 1.19384 1.11917 1.19377 1.22032 0.95693 0.91076 1.08488 1.20328 0.90931 0.88031 1.10757 1.20115 0.98714 0.84480 1.04640 0.85994 1.23126 1.01696 1.00283 0.91511 1.22378 1.02305 0.98315 0.96038 0.85619 1.19457 0.87073 0.82398 0.78640 1.90642 1.14311 1.76404 1.62520 1.45665 1.11254 1.26230 1.51132 1.21846 0.94961 0.87647 0.96156 1.20546 0.89092 0.91522 0.88730 1.42416 1.03915 1.55695 1.34173 1.19869 0.94279 1.22021 1.09293 0.91863 1.25637 0.92961 1.01945 1.03191 1.70903 1.17954 1.38009 1.31835 0.83321 0.75014 0.75663 0.75513 1.21139 1.22348 1.22351 1.22826 0.96771 1.00148 0.97061 1.22186 0.99468 0.96351 0.97028 1.22056 1.00492 0.95898 0.97182 1.22389 1.00763 0.97806 0.95262 0.90379 0.89362 0.89265 0.77872 0.81365 0.87330 0.87164 0.76186 0.92702 0.91728 0.79847 0.93415 0.90473 0.92890 0.92976 0.91271 0.92703 0.92459 0.91945 0.91948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.42 10.96 59.85 0.66 1.08 16 2 N -0.46 -4.54 3.15 -121.36 -0.38 -4.92 16 3 C 0.18 1.78 12.56 -90.37 -1.14 0.64 16 4 N -0.49 -6.50 11.25 -14.66 -0.16 -6.67 16 5 C -0.03 -0.32 10.94 -17.81 -0.19 -0.51 16 6 C 0.01 0.17 6.63 -81.60 -0.54 -0.37 16 7 C -0.06 -0.71 5.53 -91.77 -0.51 -1.22 16 8 H 0.12 1.53 6.93 -51.93 -0.36 1.17 16 9 C -0.13 -1.52 9.75 -26.73 -0.26 -1.78 16 10 C -0.17 -2.20 5.71 -91.77 -0.52 -2.73 16 11 H 0.13 1.46 7.98 -51.93 -0.41 1.05 16 12 C 0.54 8.94 7.61 -10.99 -0.08 8.86 16 13 O -0.56 -10.87 16.25 5.55 0.09 -10.78 16 14 N -0.69 -11.67 5.24 -60.30 -0.32 -11.98 16 15 C 0.12 2.16 4.35 -4.04 -0.02 2.14 16 16 C 0.19 3.45 0.52 -130.16 -0.07 3.38 16 17 N -0.72 -15.70 4.67 -45.70 -0.21 -15.91 16 18 C -0.32 -8.24 8.55 -15.06 -0.13 -8.37 16 19 H 0.06 1.65 7.13 -52.49 -0.37 1.27 16 20 C -0.04 -1.07 5.50 -17.43 -0.10 -1.17 16 21 N -0.94 -27.38 13.70 55.49 0.76 -26.62 16 22 Si 1.07 25.18 29.92 -169.99 -5.09 20.10 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.30 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.30 -6.71 7.11 56.52 0.40 -6.31 16 26 C -0.13 -2.22 5.88 -24.73 -0.15 -2.37 16 27 C -0.11 -1.80 6.79 -25.07 -0.17 -1.97 16 28 C -0.12 -1.70 6.80 -25.62 -0.17 -1.87 16 29 C -0.12 -1.88 5.72 -25.62 -0.15 -2.03 16 30 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.09 0.33 8.14 -51.92 -0.42 -0.10 16 32 H 0.09 0.59 7.38 -51.93 -0.38 0.21 16 33 H 0.20 1.22 8.06 -52.48 -0.42 0.79 16 34 H 0.17 1.89 8.06 -52.49 -0.42 1.47 16 35 H 0.11 1.37 8.14 -51.93 -0.42 0.95 16 36 H 0.11 1.14 7.95 -51.93 -0.41 0.73 16 37 H 0.40 6.56 8.06 -40.82 -0.33 6.23 16 38 H 0.05 0.94 8.07 -51.93 -0.42 0.52 16 39 H 0.06 1.34 7.44 -51.93 -0.39 0.95 16 40 H 0.37 8.40 6.33 -40.82 -0.26 8.15 16 41 H 0.25 7.23 6.79 -40.82 -0.28 6.95 16 42 H 0.08 1.53 7.22 -51.93 -0.37 1.15 16 43 H 0.05 0.82 8.06 -51.93 -0.42 0.40 16 44 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 46 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.06 0.80 8.14 -51.92 -0.42 0.38 16 48 H 0.06 0.88 7.79 -51.93 -0.40 0.47 16 49 H 0.06 0.95 7.74 -51.93 -0.40 0.55 16 LS Contribution 397.31 15.07 5.99 5.99 Total: -1.00 -32.84 397.31 -10.68 -43.52 By element: Atomic # 1 Polarization: 23.36 SS G_CDS: -7.82 Total: 15.55 kcal Atomic # 6 Polarization: -4.74 SS G_CDS: -3.54 Total: -8.28 kcal Atomic # 7 Polarization: -65.77 SS G_CDS: -0.32 Total: -66.09 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: 0.09 Total: -10.78 kcal Atomic # 14 Polarization: 25.18 SS G_CDS: -5.09 Total: 20.10 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.84 -10.68 -43.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753668716.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.003 kcal (2) G-P(sol) polarization free energy of solvation -32.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds