Wall clock time and date at job start Tue Mar 31 2020 16:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 119.99864 * 2 1 4 4 H 1.48505 * 109.46855 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47126 * 299.99915 * 3 2 1 6 6 H 1.48495 * 109.47224 * 59.99999 * 3 2 1 7 7 C 1.38815 * 120.00034 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00055 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00034 * 359.97438 * 7 2 1 10 10 C 1.47757 * 126.22358 * 0.39968 * 9 7 2 11 11 C 1.55473 * 106.85265 * 185.97279 * 10 9 7 12 12 C 1.53430 * 101.67286 * 22.11412 * 11 10 9 13 13 H 1.09008 * 111.14601 * 77.99028 * 12 11 10 14 14 C 1.45020 * 126.56261 * 179.97438 * 9 7 2 15 15 H 1.09000 * 108.71264 * 263.51411 * 14 9 7 16 16 C 1.51089 * 119.18526 * 28.79732 * 14 9 7 17 17 C 1.53867 * 107.33989 * 183.26234 * 16 14 9 18 18 C 1.52724 * 111.52565 * 303.07104 * 17 16 14 19 19 N 1.45717 * 116.38326 * 207.27442 * 12 11 10 20 20 C 1.34780 * 122.22544 * 350.13630 * 19 12 11 21 21 O 1.21280 * 120.00041 * 356.12148 * 20 19 12 22 22 C 1.50706 * 120.00002 * 176.11927 * 20 19 12 23 23 H 1.08997 * 108.69619 * 307.53853 * 22 20 19 24 24 C 1.51578 * 108.73093 * 189.32517 * 22 20 19 25 25 C 1.52690 * 111.47367 * 306.27489 * 24 22 20 26 26 C 1.53676 * 108.94605 * 268.94089 * 25 24 22 27 27 H 1.08996 * 115.93093 * 287.56165 * 26 25 24 28 28 C 1.53001 * 117.08747 * 140.75116 * 26 25 24 29 29 C 1.52997 * 60.31054 * 254.84196 * 28 26 25 30 30 H 1.09011 * 118.09053 * 252.04711 * 29 28 26 31 31 C 1.53672 * 117.08192 * 105.18068 * 29 28 26 32 32 C 1.51574 * 108.73216 * 65.64209 * 22 20 19 33 33 H 0.96997 * 119.99949 * 359.97438 * 1 2 3 34 34 H 1.08990 * 110.42313 * 66.40282 * 10 9 7 35 35 H 1.09004 * 109.61656 * 305.08949 * 10 9 7 36 36 H 1.09001 * 110.98445 * 264.02374 * 11 10 9 37 37 H 1.08995 * 111.02397 * 140.22699 * 11 10 9 38 38 H 1.08994 * 109.88271 * 302.72174 * 16 14 9 39 39 H 1.09005 * 109.88091 * 63.80345 * 16 14 9 40 40 H 1.09001 * 109.07339 * 63.59949 * 17 16 14 41 41 H 1.09007 * 109.06821 * 182.54946 * 17 16 14 42 42 H 1.09001 * 109.15695 * 288.12751 * 18 17 16 43 43 H 1.08994 * 109.11570 * 168.91013 * 18 17 16 44 44 H 1.08996 * 109.08203 * 66.79224 * 24 22 20 45 45 H 1.09004 * 109.07693 * 185.76638 * 24 22 20 46 46 H 1.09005 * 109.55600 * 28.77956 * 25 24 22 47 47 H 1.09001 * 109.56035 * 149.09763 * 25 24 22 48 48 H 1.09004 * 117.46607 * 2.42162 * 28 26 25 49 49 H 1.08992 * 117.46641 * 147.27343 * 28 26 25 50 50 H 1.09000 * 109.56060 * 339.06409 * 31 29 28 51 51 H 1.09000 * 109.56527 * 99.27875 * 31 29 28 52 52 H 1.08996 * 109.08218 * 174.24868 * 32 22 20 53 53 H 1.09007 * 109.08094 * 293.22312 * 32 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3964 1.2124 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1432 -2.5483 -0.0083 11 6 -0.4317 -4.0678 0.1498 12 6 0.8688 -4.5653 0.7943 13 1 0.8958 -4.3291 1.8582 14 6 1.9025 -3.7186 -0.0016 15 1 1.9338 -4.0854 -1.0275 16 6 3.2566 -3.9351 0.6327 17 6 3.6385 -5.4084 0.4069 18 6 2.5822 -6.3544 0.9742 19 7 1.2252 -5.9557 0.5434 20 6 0.3749 -6.8209 -0.0440 21 8 -0.7530 -6.4702 -0.3191 22 6 0.8257 -8.2240 -0.3590 23 1 1.7539 -8.1732 -0.9282 24 6 -0.2323 -8.8953 -1.2120 25 6 -1.6087 -8.8227 -0.5551 26 6 -1.8134 -10.0734 0.3140 27 1 -1.9810 -11.0060 -0.2247 28 6 -2.5198 -9.8803 1.6574 29 6 -1.0073 -10.1083 1.6224 30 1 -0.6251 -11.0699 1.9654 31 6 -0.1097 -8.8876 1.8789 32 6 1.0948 -8.9526 0.9426 33 1 -0.4850 0.8400 0.0004 34 1 -0.5603 -2.1861 -0.9479 35 1 -0.5757 -1.9985 0.8276 36 1 -0.5912 -4.5379 -0.8206 37 1 -1.2835 -4.2376 0.8083 38 1 3.9942 -3.2847 0.1628 39 1 3.2033 -3.7255 1.7011 40 1 3.7412 -5.5898 -0.6630 41 1 4.5932 -5.6075 0.8939 42 1 2.6317 -6.3342 2.0629 43 1 2.7856 -7.3668 0.6255 44 1 -0.2741 -8.4008 -2.1825 45 1 0.0383 -9.9411 -1.3576 46 1 -1.6687 -7.9309 0.0689 47 1 -2.3790 -8.7834 -1.3253 48 1 -2.8716 -8.8778 1.9009 49 1 -3.1430 -10.6978 2.0197 50 1 -0.6723 -7.9741 1.6866 51 1 0.2303 -8.8957 2.9144 52 1 1.3220 -9.9964 0.7263 53 1 1.9539 -8.4968 1.4351 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049608607.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:46:41 Heat of formation + Delta-G solvation = 11.258867 kcal Electronic energy + Delta-G solvation = -31324.895050 eV Core-core repulsion = 27583.333116 eV Total energy + Delta-G solvation = -3741.561934 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 332.221 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.19781 -40.40398 -38.67091 -37.03379 -35.42642 -34.15147 -33.86915 -32.57015 -30.82927 -29.72331 -28.13160 -26.42517 -25.91387 -25.08229 -23.10793 -22.77429 -22.45679 -22.05262 -21.18099 -19.75261 -19.50623 -18.52713 -17.44719 -17.22865 -17.19554 -16.64049 -16.21253 -15.98649 -15.79635 -15.42853 -15.25791 -14.78608 -14.67605 -14.54952 -14.11449 -13.97605 -13.81507 -13.69686 -13.41644 -13.14493 -12.94594 -12.82631 -12.77921 -12.71593 -12.61730 -12.47849 -12.08941 -12.05715 -11.93427 -11.76343 -11.71187 -11.66691 -11.58521 -11.49917 -11.40329 -11.19467 -10.76870 -10.63134 -10.35847 -9.91763 -9.41205 -8.92124 -7.84871 -5.22623 1.44553 1.46194 1.56383 1.76896 2.05545 2.49621 2.93695 3.33161 3.33939 3.53725 3.76377 3.85091 3.92387 3.94839 4.00446 4.06322 4.11532 4.16109 4.24020 4.26413 4.31034 4.36260 4.45348 4.56093 4.58921 4.60107 4.61867 4.69728 4.79098 4.80629 4.85491 4.91995 4.95063 5.03184 5.05110 5.10391 5.15038 5.16768 5.19466 5.24775 5.28611 5.33106 5.35552 5.43341 5.45637 5.48347 5.55479 5.58900 5.64803 5.73300 5.82745 6.17847 6.65324 7.05025 7.36499 7.75348 8.44345 9.26336 Molecular weight = 332.22amu Principal moments of inertia in cm(-1) A = 0.022203 B = 0.003310 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.804519 B = 8458.113366 C = 9136.694712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.071 4.071 3 Si 0.980 3.020 4 H -0.260 1.260 5 H -0.296 1.296 6 H -0.292 1.292 7 C -0.232 4.232 8 H 0.089 0.911 9 N -0.612 5.612 10 C 0.183 3.817 11 C -0.107 4.107 12 C 0.134 3.866 13 H 0.073 0.927 14 C 0.153 3.847 15 H -0.001 1.001 16 C -0.111 4.111 17 C -0.121 4.121 18 C 0.099 3.901 19 N -0.599 5.599 20 C 0.511 3.489 21 O -0.564 6.564 22 C -0.095 4.095 23 H 0.114 0.886 24 C -0.090 4.090 25 C -0.113 4.113 26 C -0.150 4.150 27 H 0.113 0.887 28 C -0.189 4.189 29 C -0.136 4.136 30 H 0.125 0.875 31 C -0.098 4.098 32 C -0.108 4.108 33 H 0.245 0.755 34 H -0.005 1.005 35 H 0.025 0.975 36 H 0.067 0.933 37 H 0.058 0.942 38 H 0.054 0.946 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.111 0.889 42 H 0.084 0.916 43 H 0.124 0.876 44 H 0.047 0.953 45 H 0.091 0.909 46 H 0.084 0.916 47 H 0.043 0.957 48 H 0.069 0.931 49 H 0.103 0.897 50 H 0.038 0.962 51 H 0.075 0.925 52 H 0.099 0.901 53 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.515 -25.725 3.781 26.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.264 4.264 3 Si 0.808 3.192 4 H -0.184 1.184 5 H -0.223 1.223 6 H -0.219 1.219 7 C -0.361 4.361 8 H 0.107 0.893 9 N -0.337 5.337 10 C 0.058 3.942 11 C -0.146 4.146 12 C 0.028 3.972 13 H 0.091 0.909 14 C 0.045 3.955 15 H 0.016 0.984 16 C -0.150 4.150 17 C -0.160 4.160 18 C -0.022 4.022 19 N -0.332 5.332 20 C 0.302 3.698 21 O -0.444 6.444 22 C -0.116 4.116 23 H 0.131 0.869 24 C -0.127 4.127 25 C -0.150 4.150 26 C -0.168 4.168 27 H 0.131 0.869 28 C -0.226 4.226 29 C -0.154 4.154 30 H 0.143 0.857 31 C -0.135 4.135 32 C -0.146 4.146 33 H 0.055 0.945 34 H 0.013 0.987 35 H 0.043 0.957 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.129 0.871 42 H 0.102 0.898 43 H 0.142 0.858 44 H 0.065 0.935 45 H 0.109 0.891 46 H 0.102 0.898 47 H 0.061 0.939 48 H 0.088 0.912 49 H 0.122 0.878 50 H 0.056 0.944 51 H 0.094 0.906 52 H 0.118 0.882 53 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 5.916 -25.344 3.618 26.275 hybrid contribution -0.602 1.947 -0.341 2.066 sum 5.313 -23.397 3.277 24.215 Atomic orbital electron populations 1.70208 1.06566 1.25140 1.58550 1.25722 0.96545 1.01272 1.02814 0.84985 0.78382 0.79301 0.76535 1.18426 1.22342 1.21914 1.19470 0.91066 0.83199 1.42384 0.89277 1.44235 1.02041 1.01101 1.86309 1.21324 0.84098 0.91375 0.97450 1.22606 0.96381 0.94732 1.00884 1.21892 0.95809 0.81406 0.98069 0.90893 1.20955 0.94477 0.84773 0.95269 0.98389 1.21404 0.95357 0.97774 1.00442 1.21910 0.99685 0.92117 1.02241 1.22276 0.79195 1.00096 1.00636 1.48145 1.16067 1.08966 1.59984 1.21419 0.84406 0.88102 0.75848 1.90592 1.20948 1.78271 1.54631 1.20956 1.01246 0.89779 0.99657 0.86862 1.20926 0.93631 1.01045 0.97133 1.21712 0.96418 0.97665 0.99179 1.22779 1.04853 0.99579 0.89580 0.86886 1.23097 0.95786 1.02020 1.01746 1.22757 0.91782 0.99942 1.00945 0.85693 1.21335 0.96223 0.96008 0.99938 1.21401 0.98237 1.02384 0.92537 0.94540 0.98662 0.95715 0.91420 0.92288 0.92703 0.91933 0.91782 0.87078 0.89812 0.85830 0.93455 0.89101 0.89817 0.93851 0.91215 0.87839 0.94357 0.90597 0.88228 0.88980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.93 10.41 21.65 0.23 -59.71 16 2 C -0.07 -4.15 5.49 84.86 0.47 -3.68 16 3 Si 0.98 46.59 29.55 68.60 2.03 48.62 16 4 H -0.26 -11.39 7.11 99.48 0.71 -10.69 16 5 H -0.30 -14.22 7.11 99.48 0.71 -13.52 16 6 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 7 C -0.23 -13.17 9.94 84.03 0.84 -12.33 16 8 H 0.09 4.74 7.33 -2.91 -0.02 4.71 16 9 N -0.61 -32.71 3.32 -672.05 -2.23 -34.94 16 10 C 0.18 10.02 5.45 86.99 0.47 10.49 16 11 C -0.11 -4.83 4.96 31.59 0.16 -4.68 16 12 C 0.13 5.07 3.32 46.15 0.15 5.22 16 13 H 0.07 2.84 8.14 -2.38 -0.02 2.82 16 14 C 0.15 6.40 2.60 45.52 0.12 6.52 16 15 H 0.00 -0.06 8.06 -2.39 -0.02 -0.08 16 16 C -0.11 -3.56 5.44 30.26 0.16 -3.40 16 17 C -0.12 -2.44 5.93 30.79 0.18 -2.26 16 18 C 0.10 1.78 5.17 86.03 0.44 2.22 16 19 N -0.60 -16.78 2.91 -791.08 -2.30 -19.09 16 20 C 0.51 14.48 5.14 87.66 0.45 14.93 16 21 O -0.56 -20.74 9.92 -3.03 -0.03 -20.77 16 22 C -0.10 -1.75 2.03 -12.47 -0.03 -1.77 16 23 H 0.11 1.59 7.52 -2.39 -0.02 1.57 16 24 C -0.09 -1.79 4.93 30.02 0.15 -1.64 16 25 C -0.11 -2.73 4.79 30.72 0.15 -2.58 16 26 C -0.15 -2.79 5.68 -10.32 -0.06 -2.85 16 27 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 28 C -0.19 -3.66 9.78 30.59 0.30 -3.36 16 29 C -0.14 -2.19 5.67 -10.33 -0.06 -2.25 16 30 H 0.13 1.46 8.14 -2.38 -0.02 1.45 16 31 C -0.10 -1.73 5.28 30.72 0.16 -1.56 16 32 C -0.11 -1.41 4.77 30.03 0.14 -1.26 16 33 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 34 H 0.00 -0.30 7.82 -2.39 -0.02 -0.32 16 35 H 0.02 1.49 7.11 -2.38 -0.02 1.47 16 36 H 0.07 3.19 6.33 -2.39 -0.02 3.17 16 37 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 38 H 0.05 1.86 7.73 -2.39 -0.02 1.85 16 39 H 0.06 2.01 8.12 -2.38 -0.02 1.99 16 40 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.11 1.49 8.14 -2.38 -0.02 1.47 16 42 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.12 1.33 4.52 -2.39 -0.01 1.32 16 44 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.09 1.33 7.79 -2.38 -0.02 1.31 16 46 H 0.08 2.59 3.42 -8.94 -0.03 2.56 16 47 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 48 H 0.07 1.66 8.13 -2.39 -0.02 1.64 16 49 H 0.10 1.64 8.14 -2.39 -0.02 1.63 16 50 H 0.04 0.97 4.95 -2.39 -0.01 0.96 16 51 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 52 H 0.10 0.87 7.79 -2.39 -0.02 0.85 16 53 H 0.09 0.88 5.20 -2.38 -0.01 0.87 16 Total: -1.00 -74.60 373.49 2.76 -71.84 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: 0.87 Total: 18.31 kcal Atomic # 6 Polarization: -8.47 SS G_CDS: 4.20 Total: -4.26 kcal Atomic # 7 Polarization: -109.43 SS G_CDS: -4.31 Total: -113.74 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: -0.03 Total: -20.77 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.62 kcal Total: -74.60 2.76 -71.84 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049608607.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.102 kcal (2) G-P(sol) polarization free energy of solvation -74.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds