Wall clock time and date at job start Tue Mar 31 2020 17:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46894 * 111.00324 * 2 1 4 4 C 1.50697 * 109.47293 * 293.95395 * 3 2 1 5 5 H 1.08010 * 119.99831 * 0.02562 * 4 3 2 6 6 C 1.37871 * 120.00276 * 180.02562 * 4 3 2 7 7 N 1.31506 * 120.00128 * 359.97438 * 6 4 3 8 8 Si 1.86804 * 120.00028 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.47521 * 59.99841 * 8 6 4 10 10 H 1.48497 * 109.47203 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.46939 * 299.99729 * 8 6 4 12 12 C 1.46902 * 110.99719 * 123.95727 * 2 1 3 13 13 C 1.52997 * 109.47367 * 66.04101 * 12 2 1 14 14 H 1.09000 * 109.47124 * 305.00038 * 13 12 2 15 15 O 1.42900 * 109.47055 * 64.99980 * 13 12 2 16 16 C 1.53000 * 109.47314 * 184.99938 * 13 12 2 17 17 N 1.46897 * 109.47262 * 180.02562 * 16 13 12 18 18 C 1.46904 * 110.99908 * 179.97438 * 17 16 13 19 19 C 1.52992 * 109.47236 * 174.80603 * 18 17 16 20 20 H 1.09004 * 109.21924 * 57.28073 * 19 18 17 21 21 C 1.52733 * 109.25367 * 297.84167 * 19 18 17 22 22 C 1.53318 * 108.41012 * 188.60754 * 21 19 18 23 23 C 1.52735 * 108.39488 * 69.80293 * 22 21 19 24 24 C 1.50631 * 110.57556 * 308.80877 * 23 22 21 25 25 C 1.38913 * 117.75576 * 197.77384 * 24 23 22 26 26 C 1.37931 * 120.54350 * 180.61270 * 25 24 23 27 27 C 1.38263 * 119.76772 * 359.69067 * 26 25 24 28 28 C 1.37933 * 119.77593 * 0.44720 * 27 26 25 29 29 C 1.37661 * 122.55715 * 18.09874 * 24 23 22 30 30 H 1.09003 * 109.46871 * 296.04876 * 1 2 3 31 31 H 1.09004 * 109.46833 * 56.04455 * 1 2 3 32 32 H 1.08999 * 109.47416 * 176.04806 * 1 2 3 33 33 H 1.09003 * 109.47294 * 53.95293 * 3 2 1 34 34 H 1.09000 * 109.46844 * 173.95413 * 3 2 1 35 35 H 0.97006 * 120.00726 * 180.02562 * 7 6 4 36 36 H 1.08999 * 109.47057 * 306.04203 * 12 2 1 37 37 H 1.08994 * 109.46925 * 186.04558 * 12 2 1 38 38 H 0.96705 * 113.99911 * 60.00157 * 15 13 12 39 39 H 1.09008 * 109.46690 * 59.99981 * 16 13 12 40 40 H 1.09009 * 109.47112 * 300.00355 * 16 13 12 41 41 H 1.00903 * 111.00131 * 56.04826 * 17 16 13 42 42 H 1.09003 * 109.46700 * 54.80394 * 18 17 16 43 43 H 1.08997 * 109.46903 * 294.80980 * 18 17 16 44 44 H 1.08997 * 109.67767 * 68.87075 * 21 19 18 45 45 H 1.09010 * 109.70567 * 308.35182 * 21 19 18 46 46 H 1.08995 * 109.68273 * 310.07282 * 22 21 19 47 47 H 1.09004 * 109.70970 * 189.54613 * 22 21 19 48 48 H 1.08990 * 109.25683 * 188.52535 * 23 22 21 49 49 H 1.09008 * 109.22457 * 69.06704 * 23 22 21 50 50 H 1.08000 * 119.72566 * 0.58863 * 25 24 23 51 51 H 1.08001 * 120.11472 * 180.02562 * 26 25 24 52 52 H 1.08005 * 120.10852 * 180.15354 * 27 26 25 53 53 H 1.07997 * 119.72615 * 179.69881 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6371 2.0471 -1.2984 5 1 1.0740 1.5114 -2.0485 6 6 2.0278 3.3490 -1.5289 7 7 2.7130 4.0014 -0.6154 8 14 1.5829 4.1868 -3.1381 9 1 0.1056 4.2244 -3.2848 10 1 2.1152 5.5731 -3.1382 11 1 2.1736 3.4292 -4.2705 12 6 1.9954 -0.7661 1.1376 13 6 1.6313 -2.2427 0.9703 14 1 0.5530 -2.3388 0.8433 15 8 2.2954 -2.7697 -0.1800 16 6 2.0697 -3.0200 2.2131 17 7 1.7207 -4.4378 2.0523 18 6 2.1283 -5.2171 3.2290 19 6 1.6349 -6.6578 3.0825 20 1 2.0316 -7.0808 2.1595 21 6 0.1087 -6.6641 3.0239 22 6 -0.3726 -8.1180 3.0954 23 6 -0.1017 -8.6468 4.5024 24 6 1.3298 -8.3931 4.8968 25 6 1.8473 -9.1233 5.9591 26 6 3.1474 -8.9281 6.3766 27 6 3.9447 -8.0027 5.7288 28 6 3.4318 -7.2745 4.6756 29 6 2.1236 -7.4716 4.2520 30 1 -0.3633 0.4513 0.9233 31 1 -0.3633 0.5740 -0.8525 32 1 -0.3634 -1.0252 -0.0708 33 1 1.5612 1.9273 0.8309 34 1 3.0798 1.3442 0.1082 35 1 2.9877 4.9175 -0.7774 36 1 1.5611 -0.3873 2.0628 37 1 3.0796 -0.6612 1.1756 38 1 3.2600 -2.7168 -0.1360 39 1 1.5631 -2.6179 3.0906 40 1 3.1481 -2.9238 2.3402 41 1 2.1265 -4.8168 1.2098 42 1 1.6951 -4.7741 4.1259 43 1 3.2152 -5.2116 3.3097 44 1 -0.2246 -6.2126 2.0895 45 1 -0.2938 -6.1023 3.8670 46 1 0.1691 -8.7203 2.3662 47 1 -1.4415 -8.1621 2.8862 48 1 -0.2968 -9.7188 4.5273 49 1 -0.7633 -8.1445 5.2082 50 1 1.2265 -9.8496 6.4625 51 1 3.5428 -9.4999 7.2031 52 1 4.9642 -7.8472 6.0496 53 1 4.0538 -6.5484 4.1734 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000563796061.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:37 Heat of formation + Delta-G solvation = -59.541608 kcal Electronic energy + Delta-G solvation = -28021.441282 eV Core-core repulsion = 24276.809209 eV Total energy + Delta-G solvation = -3744.632073 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 332.221 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.13179 -39.60901 -37.83043 -37.04800 -35.87690 -34.62474 -33.62727 -31.23959 -31.07627 -29.87011 -28.94304 -27.60154 -26.18190 -24.68049 -23.82734 -23.46936 -22.62462 -22.04654 -21.63799 -20.20420 -18.57240 -17.64918 -17.39763 -17.14023 -16.73033 -16.51432 -16.46379 -16.07690 -15.83578 -15.64703 -15.25448 -15.08589 -14.81007 -14.77018 -14.41740 -14.17970 -13.93059 -13.76711 -13.54542 -13.32932 -13.25471 -13.03821 -12.99785 -12.79652 -12.58373 -12.52275 -12.48065 -12.38516 -12.22713 -12.12035 -12.00032 -11.72454 -11.62884 -11.43273 -11.16050 -11.10953 -10.70085 -10.61774 -9.64511 -9.43291 -9.31433 -8.96678 -8.20906 -6.30956 0.48061 0.49008 1.41011 1.44359 1.52330 2.40122 2.82994 2.94397 3.11379 3.42345 3.69110 3.75047 3.83192 3.86912 3.99161 4.09566 4.13608 4.17014 4.28194 4.29621 4.31640 4.42606 4.43522 4.48384 4.55251 4.59710 4.66301 4.69805 4.71269 4.73756 4.81396 4.86903 4.92644 5.04878 5.06380 5.07723 5.16205 5.16420 5.17450 5.20757 5.25921 5.32406 5.43339 5.52194 5.64214 5.65095 5.66426 5.78997 6.00948 6.06008 6.16054 6.31815 6.47098 6.63395 6.84749 6.96106 7.38688 8.89802 Molecular weight = 332.22amu Principal moments of inertia in cm(-1) A = 0.028272 B = 0.001747 C = 0.001686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.139111 B =16023.954743 C =16607.440650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.540 5.540 3 C 0.208 3.792 4 C -0.525 4.525 5 H 0.061 0.939 6 C 0.001 3.999 7 N -0.935 5.935 8 Si 0.970 3.030 9 H -0.268 1.268 10 H -0.282 1.282 11 H -0.269 1.269 12 C 0.024 3.976 13 C 0.130 3.870 14 H 0.095 0.905 15 O -0.559 6.559 16 C 0.040 3.960 17 N -0.683 5.683 18 C 0.071 3.929 19 C -0.038 4.038 20 H 0.079 0.921 21 C -0.100 4.100 22 C -0.120 4.120 23 C -0.080 4.080 24 C -0.086 4.086 25 C -0.132 4.132 26 C -0.130 4.130 27 C -0.134 4.134 28 C -0.134 4.134 29 C -0.082 4.082 30 H 0.010 0.990 31 H 0.055 0.945 32 H 0.077 0.923 33 H -0.040 1.040 34 H 0.004 0.996 35 H 0.265 0.735 36 H 0.031 0.969 37 H 0.067 0.933 38 H 0.379 0.621 39 H 0.079 0.921 40 H 0.040 0.960 41 H 0.349 0.651 42 H 0.064 0.936 43 H 0.037 0.963 44 H 0.071 0.929 45 H 0.054 0.946 46 H 0.061 0.939 47 H 0.076 0.924 48 H 0.084 0.916 49 H 0.078 0.922 50 H 0.136 0.864 51 H 0.139 0.861 52 H 0.134 0.866 53 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.583 -29.256 14.101 32.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.264 5.264 3 C 0.081 3.919 4 C -0.563 4.563 5 H 0.079 0.921 6 C -0.197 4.197 7 N -0.575 5.575 8 Si 0.795 3.205 9 H -0.193 1.193 10 H -0.207 1.207 11 H -0.194 1.194 12 C -0.105 4.105 13 C 0.070 3.930 14 H 0.113 0.887 15 O -0.365 6.365 16 C -0.090 4.090 17 N -0.316 5.316 18 C -0.058 4.058 19 C -0.056 4.056 20 H 0.097 0.903 21 C -0.137 4.137 22 C -0.157 4.157 23 C -0.117 4.117 24 C -0.086 4.086 25 C -0.150 4.150 26 C -0.148 4.148 27 C -0.152 4.152 28 C -0.152 4.152 29 C -0.083 4.083 30 H 0.029 0.971 31 H 0.074 0.926 32 H 0.095 0.905 33 H -0.022 1.022 34 H 0.022 0.978 35 H 0.073 0.927 36 H 0.050 0.950 37 H 0.086 0.914 38 H 0.226 0.774 39 H 0.097 0.903 40 H 0.058 0.942 41 H 0.168 0.832 42 H 0.082 0.918 43 H 0.055 0.945 44 H 0.090 0.910 45 H 0.073 0.927 46 H 0.080 0.920 47 H 0.095 0.905 48 H 0.102 0.898 49 H 0.096 0.904 50 H 0.154 0.846 51 H 0.156 0.844 52 H 0.152 0.848 53 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -2.603 -29.338 13.735 32.498 hybrid contribution 1.429 1.527 0.380 2.125 sum -1.174 -27.811 14.116 31.210 Atomic orbital electron populations 1.22234 0.87855 1.01118 0.99620 1.61944 1.07967 1.14855 1.41622 1.19391 0.93619 0.83959 0.94906 1.21445 1.34889 0.97545 1.02419 0.92059 1.25923 0.95012 0.98033 1.00771 1.70071 1.39324 1.11904 1.36200 0.85424 0.78823 0.77148 0.79149 1.19274 1.20734 1.19362 1.22837 1.00183 0.95487 0.92009 1.21767 0.97747 0.88641 0.84811 0.88713 1.86575 1.24042 1.83641 1.42222 1.22465 0.98961 0.89308 0.98271 1.60269 1.64462 1.01410 1.05411 1.22025 0.97604 0.92714 0.93422 1.19918 0.96839 0.93127 0.95736 0.90273 1.21407 0.93542 0.96374 1.02386 1.21575 1.01719 0.96071 0.96364 1.20515 0.91736 1.02038 0.97384 1.19897 0.96626 0.96114 0.95998 1.21435 0.96268 1.00227 0.97025 1.21364 0.94322 0.98667 1.00421 1.21343 1.00676 0.96756 0.96429 1.21423 0.95417 1.00272 0.98046 1.19684 0.94014 0.97185 0.97381 0.97105 0.92640 0.90482 1.02195 0.97808 0.92672 0.95039 0.91431 0.77354 0.90283 0.94178 0.83175 0.91775 0.94505 0.91008 0.92690 0.91981 0.90505 0.89785 0.90377 0.84637 0.84363 0.84773 0.85651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.59 9.14 127.69 1.17 2.76 16 2 N -0.54 -23.73 4.70 -927.07 -4.36 -28.09 16 3 C 0.21 11.27 4.72 85.56 0.40 11.68 16 4 C -0.52 -30.40 8.46 25.60 0.22 -30.18 16 5 H 0.06 3.51 7.12 -2.91 -0.02 3.48 16 6 C 0.00 0.03 5.46 84.65 0.46 0.49 16 7 N -0.93 -56.78 13.28 21.44 0.28 -56.49 16 8 Si 0.97 44.90 29.54 68.60 2.03 46.92 16 9 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 10 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 11 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 12 C 0.02 0.83 4.60 86.30 0.40 1.22 16 13 C 0.13 3.54 3.19 30.59 0.10 3.64 16 14 H 0.10 2.78 6.34 -2.39 -0.02 2.77 16 15 O -0.56 -15.87 12.62 -148.98 -1.88 -17.75 16 16 C 0.04 0.85 5.38 86.30 0.46 1.31 16 17 N -0.68 -13.09 5.96 -513.87 -3.06 -16.16 16 18 C 0.07 1.22 4.68 86.30 0.40 1.62 16 19 C -0.04 -0.61 2.45 -11.65 -0.03 -0.64 16 20 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 21 C -0.10 -1.60 4.99 30.61 0.15 -1.45 16 22 C -0.12 -1.59 5.98 30.61 0.18 -1.41 16 23 C -0.08 -1.01 5.67 29.74 0.17 -0.84 16 24 C -0.09 -1.38 5.74 -19.86 -0.11 -1.49 16 25 C -0.13 -1.88 9.61 22.36 0.21 -1.66 16 26 C -0.13 -1.78 10.05 22.20 0.22 -1.56 16 27 C -0.13 -1.98 10.05 22.20 0.22 -1.76 16 28 C -0.13 -2.20 9.04 22.36 0.20 -2.00 16 29 C -0.08 -1.40 5.43 -19.86 -0.11 -1.51 16 30 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.05 2.40 6.76 -2.39 -0.02 2.39 16 32 H 0.08 2.61 6.37 -2.39 -0.02 2.60 16 33 H -0.04 -2.33 8.12 -2.39 -0.02 -2.35 16 34 H 0.00 0.22 7.93 -2.39 -0.02 0.20 16 35 H 0.26 15.11 8.31 -92.70 -0.77 14.34 16 36 H 0.03 1.07 8.12 -2.39 -0.02 1.05 16 37 H 0.07 2.31 7.93 -2.39 -0.02 2.29 16 38 H 0.38 8.56 9.05 -74.05 -0.67 7.89 16 39 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 40 H 0.04 0.79 8.14 -2.38 -0.02 0.77 16 41 H 0.35 6.64 8.17 -89.69 -0.73 5.90 16 42 H 0.06 1.21 8.13 -2.39 -0.02 1.19 16 43 H 0.04 0.59 6.25 -2.39 -0.01 0.58 16 44 H 0.07 1.28 7.93 -2.39 -0.02 1.26 16 45 H 0.05 0.97 8.09 -2.38 -0.02 0.95 16 46 H 0.06 0.85 8.10 -2.39 -0.02 0.83 16 47 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 48 H 0.08 0.84 8.12 -2.39 -0.02 0.82 16 49 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 50 H 0.14 1.37 8.05 -2.91 -0.02 1.34 16 51 H 0.14 1.27 8.06 -2.91 -0.02 1.25 16 52 H 0.13 1.48 8.06 -2.91 -0.02 1.45 16 53 H 0.13 1.84 6.27 -2.91 -0.02 1.82 16 Total: -1.00 -67.16 412.19 -2.77 -69.93 By element: Atomic # 1 Polarization: 23.93 SS G_CDS: -0.51 Total: 23.42 kcal Atomic # 6 Polarization: -26.51 SS G_CDS: 4.73 Total: -21.78 kcal Atomic # 7 Polarization: -93.60 SS G_CDS: -7.14 Total: -100.74 kcal Atomic # 8 Polarization: -15.87 SS G_CDS: -1.88 Total: -17.75 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.92 kcal Total: -67.16 -2.77 -69.93 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563796061.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.389 kcal (2) G-P(sol) polarization free energy of solvation -67.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds