Wall clock time and date at job start Tue Mar 31 2020 16:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 C 1.52995 * 109.47214 * 176.51070 * 3 2 1 5 5 C 1.50696 * 109.47288 * 300.00121 * 4 3 2 6 6 O 1.21282 * 120.00435 * 239.99826 * 5 4 3 7 7 N 1.34776 * 119.99936 * 59.99709 * 5 4 3 8 8 C 1.46502 * 119.99710 * 179.97438 * 7 5 4 9 9 C 1.53009 * 109.47028 * 180.02562 * 8 7 5 10 10 C 1.53081 * 109.45003 * 64.78861 * 9 8 7 11 11 C 1.53190 * 109.29209 * 181.24476 * 10 9 8 12 12 N 1.46921 * 108.89311 * 305.57883 * 11 10 9 13 13 C 1.36940 * 120.63187 * 233.51481 * 12 11 10 14 14 H 1.08001 * 120.00319 * 152.61971 * 13 12 11 15 15 C 1.38813 * 119.99903 * 332.62203 * 13 12 11 16 16 N 1.31624 * 120.00070 * 159.34992 * 15 13 12 17 17 Si 1.86800 * 120.00077 * 339.35529 * 15 13 12 18 18 H 1.48494 * 109.47321 * 92.87851 * 17 15 13 19 19 H 1.48501 * 109.47194 * 212.88430 * 17 15 13 20 20 H 1.48509 * 109.46983 * 332.87654 * 17 15 13 21 21 C 1.46923 * 118.74178 * 53.54201 * 12 11 10 22 22 C 1.53035 * 109.46080 * 185.00040 * 9 8 7 23 23 C 1.53006 * 109.46860 * 60.00322 * 4 3 2 24 24 C 1.52997 * 109.46890 * 180.02562 * 23 4 3 25 25 C 1.53001 * 109.47045 * 299.99493 * 24 23 4 26 26 C 1.52998 * 109.47226 * 60.00228 * 25 24 23 27 27 C 1.52999 * 109.47212 * 300.00311 * 26 25 24 28 28 H 4.44644 * 5.63359 * 179.97438 * 4 1 2 29 29 H 1.08998 * 109.47108 * 56.51013 * 3 2 1 30 30 H 1.09003 * 109.47320 * 296.51771 * 3 2 1 31 31 H 0.96993 * 119.99928 * 0.02562 * 7 5 4 32 32 H 1.08997 * 109.47475 * 60.00515 * 8 7 5 33 33 H 1.09001 * 109.47422 * 299.99562 * 8 7 5 34 34 H 1.08996 * 109.45707 * 304.97826 * 9 8 7 35 35 H 1.08992 * 109.38800 * 61.36895 * 10 9 8 36 36 H 1.09002 * 109.61927 * 301.26174 * 10 9 8 37 37 H 1.08999 * 109.58729 * 185.71870 * 11 10 9 38 38 H 1.09004 * 109.58886 * 65.43758 * 11 10 9 39 39 H 0.97001 * 119.99914 * 180.02562 * 16 15 13 40 40 H 1.09004 * 109.59094 * 66.17180 * 21 12 11 41 41 H 1.09001 * 109.59077 * 186.46452 * 21 12 11 42 42 H 1.09002 * 109.49848 * 58.66468 * 22 9 8 43 43 H 1.08999 * 109.49849 * 298.56276 * 22 9 8 44 44 H 1.09002 * 109.47017 * 299.99772 * 23 4 3 45 45 H 1.08994 * 109.47097 * 59.99659 * 23 4 3 46 46 H 1.09006 * 109.47115 * 180.02562 * 24 23 4 47 47 H 1.08994 * 109.47838 * 59.99734 * 24 23 4 48 48 H 1.09007 * 109.47128 * 300.00422 * 25 24 23 49 49 H 1.08998 * 109.47269 * 180.02562 * 25 24 23 50 50 H 1.09002 * 109.47380 * 180.02562 * 26 25 24 51 51 H 1.08998 * 109.47161 * 60.00208 * 26 25 24 52 52 H 1.09007 * 109.46978 * 299.99706 * 27 26 25 53 53 H 1.08998 * 109.47450 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1553 1.4406 -0.0878 5 6 2.6528 2.0747 -1.3591 6 8 3.4406 2.4865 -2.1841 7 7 1.3276 2.1840 -1.5795 8 6 0.8391 2.8009 -2.8153 9 6 -0.6910 2.8007 -2.8151 10 6 -1.2007 3.6944 -1.6816 11 6 -2.7323 3.6670 -1.6652 12 7 -3.2290 4.0356 -2.9978 13 6 -4.1378 5.0489 -3.1481 14 1 -4.1744 5.6091 -4.0707 15 6 -5.0120 5.3560 -2.1145 16 7 -5.5890 6.5382 -2.0699 17 14 -5.3694 4.0917 -0.7867 18 1 -4.4399 4.2948 0.3534 19 1 -6.7697 4.2486 -0.3177 20 1 -5.1830 2.7263 -1.3402 21 6 -2.7327 3.2960 -4.1663 22 6 -1.2011 3.3301 -4.1573 23 6 2.6450 2.2363 1.1153 24 6 3.1539 3.6765 1.0272 25 6 4.6839 3.6777 1.0269 26 6 5.1943 2.8820 -0.1761 27 6 4.6854 1.4418 -0.0881 28 1 -1.0502 -0.0004 -0.0002 29 1 3.0096 -0.5662 -0.8570 30 1 3.0096 -0.4580 0.9196 31 1 0.6975 1.8549 -0.9197 32 1 1.2027 2.2344 -3.6726 33 1 1.2018 3.8269 -2.8773 34 1 -1.0539 1.7840 -2.6641 35 1 -0.8569 4.7158 -1.8437 36 1 -0.8200 3.3288 -0.7279 37 1 -3.1026 4.3787 -0.9274 38 1 -3.0772 2.6646 -1.4110 39 1 -6.1996 6.7530 -1.3474 40 1 -3.0754 2.2624 -4.1172 41 1 -3.1052 3.7615 -5.0788 42 1 -0.8185 2.7050 -4.9641 43 1 -0.8593 4.3556 -4.2975 44 1 1.5550 2.2359 1.1154 45 1 3.0085 1.7777 2.0349 46 1 2.7907 4.2433 1.8846 47 1 2.7900 4.1349 0.1077 48 1 5.0478 3.2193 1.9466 49 1 5.0464 4.7037 0.9646 50 1 6.2843 2.8825 -0.1761 51 1 4.8304 3.3404 -1.0957 52 1 5.0493 0.9835 0.8315 53 1 5.0486 0.8751 -0.9454 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000788512537.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:49:30 Heat of formation + Delta-G solvation = -3.891143 kcal Electronic energy + Delta-G solvation = -30492.151065 eV Core-core repulsion = 26749.932177 eV Total energy + Delta-G solvation = -3742.218888 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 332.221 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.98444 -39.82393 -38.29404 -36.69269 -35.63495 -34.34662 -32.80199 -32.46134 -31.93142 -31.54817 -28.62763 -27.77726 -25.80346 -24.39507 -23.94504 -23.60720 -22.53718 -21.82951 -21.08833 -20.20620 -18.96141 -18.79653 -17.53848 -17.21721 -17.15137 -16.49982 -16.04190 -15.92496 -15.54840 -15.34579 -15.25118 -15.23132 -14.93595 -14.75585 -14.65110 -14.29579 -14.10971 -14.01774 -13.68796 -13.41770 -13.30242 -13.14886 -13.02666 -12.91843 -12.86514 -12.54265 -12.25459 -12.13459 -11.98760 -11.77374 -11.67600 -11.61154 -11.47745 -11.35081 -11.23019 -11.16923 -10.88655 -10.86759 -10.67429 -10.45254 -9.98300 -8.93189 -8.16629 -5.48438 1.29238 1.41142 1.50805 1.58639 1.86249 1.89954 2.25170 2.42022 3.05275 3.33426 3.36107 3.60616 3.69910 3.73039 3.80090 3.81757 3.94603 4.01906 4.22087 4.29968 4.34983 4.37980 4.40623 4.49226 4.51167 4.60547 4.62369 4.67742 4.68931 4.73575 4.77785 4.81788 4.83809 4.92385 4.96989 5.05143 5.06280 5.10112 5.12677 5.15723 5.16587 5.22284 5.25051 5.27220 5.35539 5.39210 5.45151 5.55746 5.69601 5.86951 6.12586 6.56829 6.63346 6.92600 7.28695 7.63209 8.03140 9.03522 Molecular weight = 332.22amu Principal moments of inertia in cm(-1) A = 0.016186 B = 0.003232 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.520409 B = 8660.037302 C = 8799.228968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.203 4.203 3 C -0.003 4.003 4 C -0.066 4.066 5 C 0.517 3.483 6 O -0.573 6.573 7 N -0.723 5.723 8 C 0.130 3.870 9 C -0.079 4.079 10 C -0.118 4.118 11 C 0.122 3.878 12 N -0.621 5.621 13 C -0.251 4.251 14 H 0.048 0.952 15 C -0.039 4.039 16 N -0.960 5.960 17 Si 0.951 3.049 18 H -0.273 1.273 19 H -0.313 1.313 20 H -0.255 1.255 21 C 0.144 3.856 22 C -0.118 4.118 23 C -0.105 4.105 24 C -0.126 4.126 25 C -0.115 4.115 26 C -0.135 4.135 27 C -0.089 4.089 28 H 0.233 0.767 29 H 0.095 0.905 30 H 0.130 0.870 31 H 0.407 0.593 32 H 0.068 0.932 33 H 0.048 0.952 34 H 0.086 0.914 35 H 0.046 0.954 36 H 0.073 0.927 37 H 0.046 0.954 38 H 0.041 0.959 39 H 0.261 0.739 40 H 0.040 0.960 41 H 0.053 0.947 42 H 0.088 0.912 43 H 0.049 0.951 44 H 0.060 0.940 45 H 0.103 0.897 46 H 0.073 0.927 47 H 0.031 0.969 48 H 0.082 0.918 49 H 0.055 0.945 50 H 0.069 0.931 51 H 0.057 0.943 52 H 0.100 0.900 53 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.696 -16.886 8.959 28.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.203 4.203 3 C -0.039 4.039 4 C -0.069 4.069 5 C 0.305 3.695 6 O -0.453 6.453 7 N -0.378 5.378 8 C 0.006 3.994 9 C -0.098 4.098 10 C -0.157 4.157 11 C -0.003 4.003 12 N -0.345 5.345 13 C -0.380 4.380 14 H 0.065 0.935 15 C -0.233 4.233 16 N -0.607 5.607 17 Si 0.779 3.221 18 H -0.200 1.200 19 H -0.242 1.242 20 H -0.179 1.179 21 C 0.019 3.981 22 C -0.158 4.158 23 C -0.142 4.142 24 C -0.164 4.164 25 C -0.152 4.152 26 C -0.173 4.173 27 C -0.127 4.127 28 H 0.250 0.750 29 H 0.113 0.887 30 H 0.148 0.852 31 H 0.248 0.752 32 H 0.086 0.914 33 H 0.067 0.933 34 H 0.104 0.896 35 H 0.064 0.936 36 H 0.091 0.909 37 H 0.064 0.936 38 H 0.059 0.941 39 H 0.070 0.930 40 H 0.058 0.942 41 H 0.072 0.928 42 H 0.107 0.893 43 H 0.068 0.932 44 H 0.079 0.921 45 H 0.121 0.879 46 H 0.092 0.908 47 H 0.050 0.950 48 H 0.101 0.899 49 H 0.074 0.926 50 H 0.087 0.913 51 H 0.076 0.924 52 H 0.118 0.882 53 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 22.137 -16.502 8.414 28.864 hybrid contribution -1.411 0.347 0.427 1.514 sum 20.726 -16.155 8.841 27.726 Atomic orbital electron populations 1.25571 0.96824 0.99230 1.00623 1.23290 0.95055 1.01027 1.00939 1.18928 0.84338 0.94639 1.05991 1.20928 0.98307 0.95229 0.92402 1.21017 0.81896 0.78114 0.88493 1.90605 1.55856 1.50468 1.48333 1.46565 1.07636 1.61299 1.22348 1.21294 0.93484 0.97469 0.87134 1.21175 0.92805 1.00031 0.95746 1.21938 0.95663 0.99568 0.98507 1.21385 0.93919 0.97933 0.87077 1.44479 1.48314 1.38964 1.02790 1.18878 1.10126 1.07158 1.01863 0.93451 1.25966 0.97792 0.98317 1.01272 1.69988 1.34298 1.21354 1.35011 0.85847 0.75516 0.81250 0.79482 1.19951 1.24188 1.17942 1.21098 0.92859 0.94866 0.89255 1.21876 0.96212 1.01013 0.96649 1.21662 1.00348 0.94868 0.97333 1.21583 0.96940 0.96799 1.01046 1.21525 0.94480 1.00151 0.99044 1.21750 1.00531 0.95974 0.98999 1.21389 0.90399 0.97461 1.03409 0.75048 0.88659 0.85230 0.75161 0.91418 0.93330 0.89580 0.93562 0.90873 0.93617 0.94141 0.93012 0.94171 0.92816 0.89308 0.93225 0.92132 0.87860 0.90830 0.95010 0.89920 0.92637 0.91280 0.92444 0.88152 0.91786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.29 17.63 74.32 1.31 -1.98 16 2 C -0.20 -3.25 9.76 31.12 0.30 -2.95 16 3 C 0.00 -0.03 4.78 28.79 0.14 0.11 16 4 C -0.07 -1.07 0.50 -52.93 -0.03 -1.10 16 5 C 0.52 12.63 4.93 87.66 0.43 13.07 16 6 O -0.57 -17.90 13.65 -3.03 -0.04 -17.95 16 7 N -0.72 -17.26 4.62 -463.05 -2.14 -19.40 16 8 C 0.13 3.44 5.07 86.38 0.44 3.88 16 9 C -0.08 -2.16 2.18 -10.75 -0.02 -2.18 16 10 C -0.12 -3.82 5.25 30.68 0.16 -3.66 16 11 C 0.12 4.93 4.20 86.36 0.36 5.29 16 12 N -0.62 -28.73 2.77 -699.09 -1.94 -30.67 16 13 C -0.25 -14.32 10.03 84.03 0.84 -13.48 16 14 H 0.05 2.98 8.06 -2.91 -0.02 2.96 16 15 C -0.04 -2.30 5.23 84.86 0.44 -1.85 16 16 N -0.96 -60.98 13.97 21.65 0.30 -60.67 16 17 Si 0.95 45.89 24.34 68.60 1.67 47.56 16 18 H -0.27 -12.33 6.62 99.48 0.66 -11.68 16 19 H -0.31 -15.46 7.11 99.48 0.71 -14.75 16 20 H -0.26 -11.52 6.64 99.48 0.66 -10.86 16 21 C 0.14 5.35 6.52 86.37 0.56 5.91 16 22 C -0.12 -3.55 5.37 30.67 0.16 -3.38 16 23 C -0.10 -1.58 4.38 30.60 0.13 -1.44 16 24 C -0.13 -2.30 5.70 30.59 0.17 -2.13 16 25 C -0.11 -1.83 5.92 30.59 0.18 -1.65 16 26 C -0.14 -2.48 5.63 30.59 0.17 -2.31 16 27 C -0.09 -1.31 4.37 30.59 0.13 -1.17 16 28 H 0.23 2.86 7.80 -4.41 -0.03 2.82 16 29 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.13 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.41 8.72 3.27 -92.71 -0.30 8.41 16 32 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.07 2.01 7.15 -2.39 -0.02 1.99 16 37 H 0.05 2.09 4.50 -2.39 -0.01 2.08 16 38 H 0.04 1.52 7.07 -2.38 -0.02 1.50 16 39 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 40 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.05 2.07 7.93 -2.39 -0.02 2.05 16 42 H 0.09 2.14 8.14 -2.39 -0.02 2.13 16 43 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 44 H 0.06 1.01 6.67 -2.39 -0.02 1.00 16 45 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 47 H 0.03 0.77 7.22 -2.39 -0.02 0.75 16 48 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 49 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 50 H 0.07 1.09 8.14 -2.39 -0.02 1.08 16 51 H 0.06 1.49 5.51 -2.39 -0.01 1.48 16 52 H 0.10 0.86 8.14 -2.38 -0.02 0.84 16 53 H 0.06 1.03 8.10 -2.39 -0.02 1.01 16 Total: -1.00 -72.61 390.88 4.23 -68.37 By element: Atomic # 1 Polarization: 23.31 SS G_CDS: 0.47 Total: 23.78 kcal Atomic # 6 Polarization: -16.93 SS G_CDS: 5.90 Total: -11.03 kcal Atomic # 7 Polarization: -106.97 SS G_CDS: -3.77 Total: -110.75 kcal Atomic # 8 Polarization: -17.90 SS G_CDS: -0.04 Total: -17.95 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 1.67 Total: 47.56 kcal Total: -72.61 4.23 -68.37 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788512537.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.482 kcal (2) G-P(sol) polarization free energy of solvation -72.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds