Wall clock time and date at job start Tue Mar 31 2020 17:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 110.28630 * 2 1 4 4 C 1.54378 * 110.32736 * 122.12891 * 2 1 3 5 5 N 1.48556 * 104.59420 * 142.84962 * 4 2 1 6 6 C 1.46903 * 110.99864 * 200.96209 * 5 4 2 7 7 C 1.50692 * 109.47179 * 69.87490 * 6 5 4 8 8 C 1.38293 * 119.92615 * 89.99985 * 7 6 5 9 9 C 1.38102 * 120.07322 * 179.97438 * 8 7 6 10 10 C 1.38904 * 119.92935 * 0.02562 * 9 8 7 11 11 N 1.39674 * 120.07613 * 179.97438 * 10 9 8 12 12 C 1.46501 * 120.00040 * 359.97438 * 11 10 9 13 13 C 1.46506 * 119.99862 * 179.97438 * 11 10 9 14 14 C 1.50699 * 109.46928 * 90.00234 * 13 11 10 15 15 H 1.08003 * 119.99963 * 0.02562 * 14 13 11 16 16 C 1.37873 * 119.99865 * 179.97438 * 14 13 11 17 17 N 1.31514 * 120.00518 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99987 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47000 * 60.00482 * 18 16 14 20 20 H 1.48506 * 109.47330 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47185 * 300.00291 * 18 16 14 22 22 C 1.38916 * 119.85171 * 0.24753 * 10 9 8 23 23 C 1.38110 * 119.91982 * 359.49716 * 22 10 9 24 24 C 1.48560 * 104.22438 * 320.51954 * 5 4 2 25 25 C 1.54262 * 110.40932 * 237.82069 * 2 1 3 26 26 C 1.52996 * 110.32433 * 122.06157 * 25 2 1 27 27 C 1.53001 * 110.32354 * 359.95181 * 25 2 1 28 28 O 1.42895 * 109.46837 * 180.02562 * 27 25 2 29 29 H 1.08997 * 109.46888 * 299.32204 * 1 2 3 30 30 H 1.08997 * 109.47006 * 59.32470 * 1 2 3 31 31 H 1.09001 * 109.46989 * 179.32552 * 1 2 3 32 32 H 1.09004 * 110.40944 * 24.06944 * 4 2 1 33 33 H 1.08996 * 110.41177 * 261.63044 * 4 2 1 34 34 H 1.09003 * 109.46654 * 309.87301 * 6 5 4 35 35 H 1.08994 * 109.46936 * 189.87979 * 6 5 4 36 36 H 1.08001 * 119.95958 * 359.95805 * 8 7 6 37 37 H 1.08005 * 120.03362 * 180.02562 * 9 8 7 38 38 H 1.08999 * 109.46532 * 269.99757 * 12 11 10 39 39 H 1.09000 * 109.46877 * 29.99781 * 12 11 10 40 40 H 1.09000 * 109.47251 * 149.99887 * 12 11 10 41 41 H 1.09004 * 109.47073 * 210.00062 * 13 11 10 42 42 H 1.09000 * 109.47212 * 330.00145 * 13 11 10 43 43 H 0.96992 * 120.00316 * 179.97438 * 17 16 14 44 44 H 1.07998 * 120.04002 * 179.72626 * 22 10 9 45 45 H 1.07995 * 119.95873 * 180.25408 * 23 22 10 46 46 H 1.08997 * 110.41193 * 158.26526 * 24 5 4 47 47 H 1.08997 * 110.40772 * 280.70425 * 24 5 4 48 48 H 1.09000 * 109.47680 * 59.99890 * 26 25 2 49 49 H 1.09001 * 109.47210 * 179.97438 * 26 25 2 50 50 H 1.09000 * 109.47031 * 299.99816 * 26 25 2 51 51 H 1.09000 * 109.47062 * 300.00363 * 27 25 2 52 52 H 1.09001 * 109.46983 * 60.00568 * 27 25 2 53 53 H 0.96703 * 114.00255 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9079 1.0224 0.0000 4 6 2.0663 -0.7699 1.2259 5 7 3.2708 -1.4801 0.7244 6 6 3.6092 -2.6183 1.5893 7 6 2.5675 -3.6958 1.4321 8 6 2.7286 -4.6760 0.4699 9 6 1.7762 -5.6652 0.3235 10 6 0.6551 -5.6747 1.1436 11 7 -0.3104 -6.6734 0.9978 12 6 -0.1416 -7.7122 -0.0213 13 6 -1.4918 -6.6821 1.8641 14 6 -2.5916 -5.8765 1.2218 15 1 -2.4271 -5.4055 0.2639 16 6 -3.8081 -5.7416 1.8565 17 7 -4.0087 -6.3156 3.0227 18 14 -5.1711 -4.7424 1.0606 19 1 -5.5171 -5.3372 -0.2553 20 1 -6.3688 -4.7513 1.9386 21 1 -4.7108 -3.3440 0.8662 22 6 0.4935 -4.6854 2.1053 23 6 1.4525 -3.7020 2.2499 24 6 2.8840 -1.9404 -0.6341 25 6 2.0680 -0.7700 -1.2237 26 6 2.9671 0.1353 -2.0680 27 6 0.9086 -1.3027 -2.0681 28 8 1.4268 -2.0124 -3.1948 29 1 -0.3633 0.5033 0.8960 30 1 -0.3633 0.5243 -0.8838 31 1 -0.3633 -1.0276 -0.0121 32 1 1.3237 -1.4846 1.5806 33 1 2.3378 -0.0761 2.0216 34 1 3.6377 -2.2892 2.6281 35 1 4.5852 -3.0122 1.3062 36 1 3.6002 -4.6676 -0.1679 37 1 1.9028 -6.4306 -0.4279 38 1 -0.6023 -7.3849 -0.9534 39 1 0.9210 -7.8918 -0.1846 40 1 -0.6181 -8.6328 0.3158 41 1 -1.8296 -7.7085 2.0076 42 1 -1.2376 -6.2450 2.8297 43 1 -4.8643 -6.2203 3.4693 44 1 -0.3791 -4.6873 2.7416 45 1 1.3295 -2.9350 3.0001 46 1 3.7712 -2.1280 -1.2389 47 1 2.2694 -2.8383 -0.5705 48 1 3.8083 0.4767 -1.4647 49 1 3.3394 -0.4220 -2.9275 50 1 2.3944 0.9962 -2.4131 51 1 0.2986 -1.9751 -1.4647 52 1 0.2973 -0.4688 -2.4132 53 1 0.7462 -2.3793 -3.7757 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000827700482.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:40:32 Heat of formation + Delta-G solvation = -30.881529 kcal Electronic energy + Delta-G solvation = -30492.538336 eV Core-core repulsion = 26749.149057 eV Total energy + Delta-G solvation = -3743.389279 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 332.221 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.46009 -40.12256 -37.95371 -36.95116 -35.15295 -34.51534 -32.35720 -31.84003 -31.12205 -29.67158 -28.16749 -27.78613 -26.48581 -26.19358 -24.74399 -23.49614 -22.94631 -21.84041 -21.00339 -19.43609 -18.67029 -18.41062 -18.07463 -16.93508 -16.73000 -16.64353 -16.27369 -15.98944 -15.67142 -15.35225 -15.31016 -14.80039 -14.69450 -14.44529 -14.35501 -14.20550 -14.04139 -13.82131 -13.46034 -13.37061 -13.20583 -13.10202 -13.02902 -12.84573 -12.77338 -12.65957 -12.55590 -12.29389 -12.24703 -12.01608 -11.93961 -11.79509 -11.58464 -11.41255 -11.32838 -11.23241 -10.73215 -10.66291 -10.40721 -9.68386 -9.34911 -8.38449 -7.84273 -6.39632 0.63873 0.78183 1.34538 1.35760 1.44219 2.31318 2.59125 2.99579 3.04176 3.20369 3.37565 3.63022 3.73778 3.97880 4.03826 4.14293 4.19323 4.26472 4.33812 4.37339 4.40617 4.47628 4.56123 4.57991 4.59128 4.66359 4.67972 4.74704 4.79155 4.82380 4.87037 4.93611 4.95370 4.96818 5.03067 5.09305 5.13347 5.14942 5.16437 5.26467 5.26701 5.29937 5.40210 5.52628 5.54786 5.60680 5.66101 5.78699 6.01655 6.04606 6.12321 6.15279 6.46163 6.79132 6.86769 6.88806 7.32064 8.81028 Molecular weight = 332.22amu Principal moments of inertia in cm(-1) A = 0.010830 B = 0.004093 C = 0.003601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2584.784035 B = 6839.254241 C = 7774.288945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.080 4.080 3 H 0.095 0.905 4 C 0.024 3.976 5 N -0.499 5.499 6 C 0.095 3.905 7 C -0.190 4.190 8 C -0.052 4.052 9 C -0.216 4.216 10 C 0.217 3.783 11 N -0.631 5.631 12 C 0.100 3.900 13 C 0.267 3.733 14 C -0.540 4.540 15 H 0.047 0.953 16 C 0.015 3.985 17 N -0.926 5.926 18 Si 0.958 3.042 19 H -0.269 1.269 20 H -0.278 1.278 21 H -0.272 1.272 22 C -0.215 4.215 23 C -0.062 4.062 24 C 0.042 3.958 25 C -0.060 4.060 26 C -0.120 4.120 27 C 0.089 3.911 28 O -0.583 6.583 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.038 0.962 32 H 0.041 0.959 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.135 0.865 37 H 0.130 0.870 38 H 0.039 0.961 39 H 0.083 0.917 40 H 0.062 0.938 41 H 0.009 0.991 42 H 0.010 0.990 43 H 0.267 0.733 44 H 0.095 0.905 45 H 0.121 0.879 46 H 0.074 0.926 47 H 0.049 0.951 48 H 0.061 0.939 49 H 0.053 0.947 50 H 0.058 0.942 51 H 0.027 0.973 52 H 0.059 0.941 53 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.039 11.117 -8.452 19.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.099 4.099 3 H 0.113 0.887 4 C -0.104 4.104 5 N -0.221 5.221 6 C -0.032 4.032 7 C -0.194 4.194 8 C -0.072 4.072 9 C -0.239 4.239 10 C 0.111 3.889 11 N -0.338 5.338 12 C -0.043 4.043 13 C 0.146 3.854 14 C -0.579 4.579 15 H 0.065 0.935 16 C -0.184 4.184 17 N -0.565 5.565 18 Si 0.782 3.218 19 H -0.194 1.194 20 H -0.203 1.203 21 H -0.198 1.198 22 C -0.237 4.237 23 C -0.081 4.081 24 C -0.086 4.086 25 C -0.061 4.061 26 C -0.177 4.177 27 C 0.011 3.989 28 O -0.390 6.390 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.107 0.893 34 H 0.102 0.898 35 H 0.109 0.891 36 H 0.153 0.847 37 H 0.148 0.852 38 H 0.057 0.943 39 H 0.101 0.899 40 H 0.080 0.920 41 H 0.027 0.973 42 H 0.028 0.972 43 H 0.076 0.924 44 H 0.113 0.887 45 H 0.139 0.861 46 H 0.092 0.908 47 H 0.067 0.933 48 H 0.080 0.920 49 H 0.072 0.928 50 H 0.077 0.923 51 H 0.045 0.955 52 H 0.077 0.923 53 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 14.813 11.432 -8.061 20.374 hybrid contribution -2.740 -0.805 -0.119 2.859 sum 12.072 10.627 -8.180 18.044 Atomic orbital electron populations 1.21952 0.94997 1.01230 1.02675 1.21926 0.95209 0.99826 0.92917 0.88699 1.23355 0.91925 0.97370 0.97764 1.65823 1.32454 1.21476 1.02298 1.21192 0.96286 0.87529 0.98240 1.20204 0.98862 1.00385 0.99962 1.20865 0.97711 0.92298 0.96290 1.20763 0.95761 1.03530 1.03871 1.18176 0.88736 0.88390 0.93549 1.46964 1.21408 1.27489 1.37960 1.21586 1.01890 0.90190 0.90647 1.18787 0.81953 0.95498 0.89183 1.21692 0.98290 1.32451 1.05477 0.93475 1.25741 1.00715 0.96659 0.95301 1.70021 1.25441 1.45008 1.16075 0.85614 0.78341 0.79189 0.78609 1.19377 1.20337 1.19770 1.20754 1.01714 0.98516 1.02758 1.20806 0.92987 0.96225 0.98119 1.23244 0.98755 0.96651 0.89925 1.21321 0.94768 0.95491 0.94494 1.21656 0.98895 0.98222 0.98962 1.22370 0.94936 0.94546 0.87016 1.86394 1.38884 1.74587 1.39152 0.91850 0.91165 0.94338 0.94044 0.89307 0.89777 0.89066 0.84733 0.85189 0.94271 0.89889 0.91960 0.97263 0.97203 0.92359 0.88731 0.86114 0.90763 0.93255 0.91982 0.92819 0.92268 0.95498 0.92322 0.76046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.28 7.93 71.98 0.57 -2.71 16 2 C -0.08 -1.68 3.30 -9.90 -0.03 -1.71 16 3 H 0.09 1.73 7.71 -2.39 -0.02 1.71 16 4 C 0.02 0.55 5.87 86.45 0.51 1.06 16 5 N -0.50 -11.68 5.65 -886.08 -5.01 -16.69 16 6 C 0.10 2.21 5.75 85.55 0.49 2.70 16 7 C -0.19 -5.46 3.85 -19.84 -0.08 -5.54 16 8 C -0.05 -1.51 7.48 22.25 0.17 -1.35 16 9 C -0.22 -7.21 9.21 22.40 0.21 -7.00 16 10 C 0.22 8.81 6.55 38.21 0.25 9.06 16 11 N -0.63 -27.56 2.99 -726.54 -2.17 -29.73 16 12 C 0.10 3.48 10.23 127.77 1.31 4.79 16 13 C 0.27 14.02 4.95 85.63 0.42 14.44 16 14 C -0.54 -30.20 9.39 25.60 0.24 -29.96 16 15 H 0.05 2.67 7.81 -2.91 -0.02 2.65 16 16 C 0.02 0.85 5.46 84.65 0.46 1.31 16 17 N -0.93 -54.06 13.29 21.45 0.28 -53.78 16 18 Si 0.96 43.60 29.54 68.60 2.03 45.62 16 19 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 20 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 21 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 22 C -0.21 -8.92 9.20 22.40 0.21 -8.72 16 23 C -0.06 -2.09 8.03 22.25 0.18 -1.91 16 24 C 0.04 1.05 4.87 86.45 0.42 1.47 16 25 C -0.06 -1.34 0.83 -51.29 -0.04 -1.38 16 26 C -0.12 -2.35 8.10 71.98 0.58 -1.77 16 27 C 0.09 2.07 4.65 71.98 0.33 2.40 16 28 O -0.58 -13.26 12.71 -148.98 -1.89 -15.16 16 29 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.07 1.31 6.98 -2.39 -0.02 1.29 16 31 H 0.04 1.03 6.63 -2.39 -0.02 1.01 16 32 H 0.04 1.14 4.95 -2.38 -0.01 1.13 16 33 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.08 1.81 8.03 -2.39 -0.02 1.79 16 35 H 0.09 1.89 8.08 -2.39 -0.02 1.87 16 36 H 0.13 3.21 8.06 -2.91 -0.02 3.19 16 37 H 0.13 3.82 6.14 -2.91 -0.02 3.80 16 38 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.08 2.36 6.20 -2.39 -0.01 2.34 16 40 H 0.06 2.11 7.89 -2.39 -0.02 2.09 16 41 H 0.01 0.52 7.89 -2.38 -0.02 0.50 16 42 H 0.01 0.57 6.21 -2.39 -0.01 0.55 16 43 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 44 H 0.09 4.56 6.15 -2.91 -0.02 4.54 16 45 H 0.12 3.68 7.50 -2.91 -0.02 3.65 16 46 H 0.07 1.85 7.86 -2.39 -0.02 1.83 16 47 H 0.05 1.46 4.45 -2.39 -0.01 1.45 16 48 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 49 H 0.05 1.13 7.62 -2.39 -0.02 1.11 16 50 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 51 H 0.03 0.75 6.68 -2.39 -0.02 0.74 16 52 H 0.06 1.18 6.88 -2.39 -0.02 1.16 16 53 H 0.39 6.06 9.12 -74.05 -0.68 5.39 16 Total: -1.00 -64.03 399.00 -0.34 -64.37 By element: Atomic # 1 Polarization: 29.96 SS G_CDS: 0.23 Total: 30.19 kcal Atomic # 6 Polarization: -31.02 SS G_CDS: 6.20 Total: -24.83 kcal Atomic # 7 Polarization: -93.31 SS G_CDS: -6.89 Total: -100.20 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: -1.89 Total: -15.16 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.62 kcal Total: -64.03 -0.34 -64.37 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827700482.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.485 kcal (2) G-P(sol) polarization free energy of solvation -64.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds