Wall clock time and date at job start Tue Mar 31 2020 17:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.86909 * 2 1 4 4 C 1.54319 * 109.88334 * 121.01819 * 2 1 3 5 5 C 1.55155 * 102.94211 * 97.37531 * 4 2 1 6 6 H 1.08996 * 111.00768 * 277.38925 * 5 4 2 7 7 N 1.46500 * 111.00251 * 153.57313 * 5 4 2 8 8 C 1.36943 * 119.99878 * 154.99968 * 7 5 4 9 9 H 1.07996 * 119.99698 * 0.02562 * 8 7 5 10 10 C 1.38809 * 119.99902 * 179.97438 * 8 7 5 11 11 N 1.31620 * 120.00319 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 120.00011 * 180.02562 * 10 8 7 13 13 H 1.48506 * 109.47297 * 59.99967 * 12 10 8 14 14 H 1.48503 * 109.47261 * 300.00148 * 12 10 8 15 15 H 1.48500 * 109.47454 * 180.02562 * 12 10 8 16 16 C 1.54913 * 101.58371 * 35.50262 * 5 4 2 17 17 N 1.47023 * 110.00587 * 238.90490 * 2 1 3 18 18 C 1.34771 * 125.65299 * 59.47144 * 17 2 1 19 19 O 1.21289 * 119.99834 * 0.02562 * 18 17 2 20 20 C 1.50698 * 120.00294 * 179.97438 * 18 17 2 21 21 C 1.52999 * 109.47298 * 300.00317 * 20 18 17 22 22 C 1.53002 * 109.47060 * 179.97438 * 21 20 18 23 23 C 1.53002 * 109.47137 * 60.00058 * 22 21 20 24 24 C 1.53003 * 109.47181 * 59.99875 * 23 22 21 25 25 C 1.53002 * 109.47187 * 300.00095 * 24 23 22 26 26 C 1.53002 * 109.47137 * 59.99879 * 25 24 23 27 27 C 1.53007 * 109.46983 * 300.00120 * 25 24 23 28 28 C 1.52995 * 109.47016 * 59.99901 * 27 25 24 29 29 C 1.52999 * 109.47098 * 299.99919 * 23 22 21 30 30 H 1.09004 * 109.47056 * 300.43827 * 1 2 3 31 31 H 1.09001 * 109.47749 * 60.43210 * 1 2 3 32 32 H 1.08997 * 109.47569 * 180.43743 * 1 2 3 33 33 H 1.09003 * 110.71883 * 339.01331 * 4 2 1 34 34 H 1.09000 * 110.87078 * 215.80864 * 4 2 1 35 35 H 0.97000 * 120.00415 * 334.99917 * 7 5 4 36 36 H 0.97001 * 119.99542 * 359.97438 * 11 10 8 37 37 H 1.09007 * 110.36757 * 81.82062 * 16 5 4 38 38 H 1.08992 * 110.37339 * 204.15057 * 16 5 4 39 39 H 1.09007 * 109.47003 * 60.00514 * 20 18 17 40 40 H 1.09005 * 109.47008 * 59.99779 * 21 20 18 41 41 H 1.08998 * 109.47001 * 299.99739 * 22 21 20 42 42 H 1.09004 * 109.46764 * 179.97438 * 22 21 20 43 43 H 1.08998 * 109.46647 * 179.97438 * 23 22 21 44 44 H 1.08998 * 109.46559 * 179.97438 * 24 23 22 45 45 H 1.08995 * 109.47043 * 59.99779 * 24 23 22 46 46 H 1.08998 * 109.47001 * 180.02562 * 25 24 23 47 47 H 1.08996 * 109.46938 * 59.99792 * 26 25 24 48 48 H 1.08995 * 109.47139 * 180.02562 * 26 25 24 49 49 H 1.08998 * 109.46760 * 300.00229 * 27 25 24 50 50 H 1.08995 * 109.47070 * 179.97438 * 27 25 24 51 51 H 1.09004 * 109.47066 * 180.02562 * 28 27 25 52 52 H 1.09005 * 109.47340 * 300.00324 * 29 23 22 53 53 H 1.08998 * 109.47352 * 180.02562 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7478 1.2437 5 6 2.3556 -2.1674 0.6944 6 1 1.4504 -2.7737 0.6621 7 7 3.3979 -2.8265 1.4852 8 6 3.4639 -4.1937 1.5271 9 1 2.7478 -4.7859 0.9768 10 6 4.4518 -4.8182 2.2760 11 7 5.3248 -4.0964 2.9463 12 14 4.5423 -6.6831 2.3326 13 1 4.7456 -7.2108 0.9595 14 1 3.2755 -7.2236 2.8880 15 1 5.6773 -7.0977 3.1958 16 6 2.8617 -1.8473 -0.7343 17 7 2.0330 -0.7135 -1.1830 18 6 1.7790 -0.3853 -2.4652 19 8 1.0809 0.5736 -2.7189 20 6 2.3634 -1.2088 -3.5838 21 6 3.8904 -1.1841 -3.4915 22 6 4.4836 -2.0208 -4.6268 23 6 4.0445 -1.4391 -5.9721 24 6 4.5393 0.0039 -6.0897 25 6 3.9461 0.8406 -4.9544 26 6 4.3851 0.2589 -3.6091 27 6 2.4190 0.8158 -5.0468 28 6 1.9243 -0.6272 -4.9292 29 6 2.5175 -1.4638 -6.0645 30 1 -0.3633 0.5206 0.8861 31 1 -0.3635 0.5071 -0.8938 32 1 -0.3634 -1.0276 0.0078 33 1 1.2908 -0.7886 2.0201 34 1 2.9636 -0.2806 1.6230 35 1 4.0412 -2.2945 1.9792 36 1 5.2780 -3.1279 2.9166 37 1 3.9134 -1.5618 -0.7092 38 1 2.7164 -2.7061 -1.3896 39 1 2.0109 -2.2369 -3.5005 40 1 4.2032 -1.5989 -2.5332 41 1 4.1311 -3.0488 -4.5430 42 1 5.5715 -2.0028 -4.5612 43 1 4.4676 -2.0350 -6.7809 44 1 4.2269 0.4180 -7.0484 45 1 5.6271 0.0215 -6.0239 46 1 4.2982 1.8687 -5.0385 47 1 5.4730 0.2765 -3.5433 48 1 3.9622 0.8547 -2.8003 49 1 2.1063 1.2301 -6.0052 50 1 1.9964 1.4115 -4.2377 51 1 0.8365 -0.6449 -4.9954 52 1 2.1650 -2.4919 -5.9807 53 1 2.2048 -1.0499 -7.0231 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000988956769.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:48 Heat of formation + Delta-G solvation = -62.729403 kcal Electronic energy + Delta-G solvation = -31350.740959 eV Core-core repulsion = 27605.970652 eV Total energy + Delta-G solvation = -3744.770307 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 332.221 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -42.87741 -40.74763 -38.71583 -36.32703 -34.36966 -33.58313 -33.41971 -33.13616 -32.24685 -29.80244 -27.57969 -26.86472 -26.73386 -25.65838 -23.85266 -22.64255 -22.38580 -22.27981 -21.55425 -20.08078 -19.52605 -18.54259 -17.88655 -16.99784 -16.85343 -16.22422 -16.02927 -15.97218 -15.54223 -15.33058 -14.98568 -14.75233 -14.71281 -14.50457 -14.33524 -14.22837 -14.17049 -13.86423 -13.68959 -13.46437 -13.34568 -13.15148 -13.08453 -12.74778 -12.67993 -12.27804 -12.25268 -12.09483 -11.87961 -11.86101 -11.81062 -11.74233 -11.70130 -11.64600 -11.22150 -11.08121 -10.96210 -10.60530 -10.57220 -10.26073 -9.66756 -9.15100 -8.36947 -5.33805 1.61103 1.62006 1.70409 1.86594 1.95216 2.72387 3.27076 3.38486 3.47154 3.54614 3.60388 3.76139 3.84153 3.92494 4.02023 4.09727 4.14507 4.18990 4.22219 4.27380 4.30884 4.33988 4.38253 4.39273 4.40960 4.47860 4.54672 4.63621 4.68683 4.75619 4.79169 4.80804 4.84245 4.92362 4.94312 5.02792 5.07063 5.08745 5.12225 5.14927 5.15888 5.17876 5.19934 5.25198 5.32110 5.42237 5.49195 5.56676 5.58527 5.61995 5.64278 6.51401 6.54312 7.06854 7.17483 7.96848 8.07874 9.14381 Molecular weight = 332.22amu Principal moments of inertia in cm(-1) A = 0.013074 B = 0.003884 C = 0.003283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.059350 B = 7207.043259 C = 8527.494324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.138 3.862 3 H 0.069 0.931 4 C -0.127 4.127 5 C 0.172 3.828 6 H 0.062 0.938 7 N -0.734 5.734 8 C -0.333 4.333 9 H 0.069 0.931 10 C -0.096 4.096 11 N -0.974 5.974 12 Si 1.123 2.877 13 H -0.276 1.276 14 H -0.279 1.279 15 H -0.296 1.296 16 C 0.094 3.906 17 N -0.608 5.608 18 C 0.534 3.466 19 O -0.566 6.566 20 C -0.089 4.089 21 C -0.082 4.082 22 C -0.105 4.105 23 C -0.083 4.083 24 C -0.103 4.103 25 C -0.084 4.084 26 C -0.105 4.105 27 C -0.116 4.116 28 C -0.060 4.060 29 C -0.104 4.104 30 H 0.082 0.918 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.091 0.909 34 H 0.071 0.929 35 H 0.363 0.637 36 H 0.246 0.754 37 H 0.058 0.942 38 H 0.070 0.930 39 H 0.094 0.906 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.069 0.931 43 H 0.087 0.913 44 H 0.073 0.927 45 H 0.066 0.934 46 H 0.068 0.932 47 H 0.068 0.932 48 H 0.034 0.966 49 H 0.067 0.933 50 H 0.062 0.938 51 H 0.062 0.938 52 H 0.067 0.933 53 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.993 7.917 -18.414 20.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.035 3.965 3 H 0.087 0.913 4 C -0.166 4.166 5 C 0.061 3.939 6 H 0.080 0.920 7 N -0.375 5.375 8 C -0.464 4.464 9 H 0.087 0.913 10 C -0.288 4.288 11 N -0.621 5.621 12 Si 0.948 3.052 13 H -0.202 1.202 14 H -0.205 1.205 15 H -0.222 1.222 16 C -0.032 4.032 17 N -0.342 5.342 18 C 0.324 3.676 19 O -0.446 6.446 20 C -0.110 4.110 21 C -0.101 4.101 22 C -0.143 4.143 23 C -0.102 4.102 24 C -0.140 4.140 25 C -0.102 4.102 26 C -0.143 4.143 27 C -0.153 4.153 28 C -0.079 4.079 29 C -0.141 4.141 30 H 0.100 0.900 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.109 0.891 34 H 0.090 0.910 35 H 0.196 0.804 36 H 0.056 0.944 37 H 0.076 0.924 38 H 0.088 0.912 39 H 0.112 0.888 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.088 0.912 43 H 0.105 0.895 44 H 0.092 0.908 45 H 0.085 0.915 46 H 0.086 0.914 47 H 0.086 0.914 48 H 0.052 0.948 49 H 0.085 0.915 50 H 0.080 0.920 51 H 0.080 0.920 52 H 0.086 0.914 53 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.714 6.998 -18.103 19.972 hybrid contribution -0.554 1.609 0.152 1.708 sum -5.267 8.607 -17.951 20.593 Atomic orbital electron populations 1.22042 0.93952 1.02068 1.02842 1.21491 0.95171 0.95645 0.84213 0.91319 1.22927 1.01917 0.95120 0.96622 1.21360 0.91095 0.92266 0.89160 0.92018 1.42431 1.34691 1.03486 1.56869 1.20353 1.14053 0.84093 1.27928 0.91282 1.27053 0.94503 1.10311 0.96885 1.70999 1.39146 1.06039 1.45943 0.82689 0.75967 0.69984 0.76577 1.20226 1.20531 1.22204 1.23082 0.94169 0.87751 0.98152 1.48640 1.50021 1.30448 1.05050 1.20700 0.79655 0.84662 0.82556 1.90563 1.40482 1.30222 1.83331 1.21308 0.96936 0.99430 0.93347 1.21135 0.92166 0.96730 1.00075 1.21539 1.00526 0.98477 0.93714 1.21078 0.95431 0.96552 0.97111 1.21530 1.00095 0.94588 0.97820 1.21045 0.95454 0.99085 0.94634 1.21496 1.00519 0.95046 0.97230 1.21698 0.95151 0.96345 1.02116 1.20781 0.99281 0.95582 0.92286 1.21562 0.95163 0.99728 0.97689 0.89950 0.92654 0.92896 0.89064 0.91037 0.80386 0.94388 0.92353 0.91210 0.88836 0.91545 0.91530 0.91190 0.89454 0.90850 0.91519 0.91367 0.91364 0.94759 0.91457 0.91984 0.91967 0.91421 0.90385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.02 9.08 71.98 0.65 -3.37 16 2 C 0.14 4.02 3.49 45.34 0.16 4.18 16 3 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 4 C -0.13 -3.89 6.14 31.78 0.20 -3.69 16 5 C 0.17 6.34 3.71 46.38 0.17 6.51 16 6 H 0.06 2.37 8.09 -2.39 -0.02 2.35 16 7 N -0.73 -34.27 5.24 -316.38 -1.66 -35.93 16 8 C -0.33 -17.52 9.96 84.03 0.84 -16.69 16 9 H 0.07 3.54 7.83 -2.91 -0.02 3.51 16 10 C -0.10 -5.28 5.50 84.86 0.47 -4.81 16 11 N -0.97 -58.50 13.70 21.65 0.30 -58.20 16 12 Si 1.12 49.66 29.92 68.60 2.05 51.71 16 13 H -0.28 -11.29 7.11 99.48 0.71 -10.59 16 14 H -0.28 -11.53 7.11 99.48 0.71 -10.82 16 15 H -0.30 -13.56 7.11 99.48 0.71 -12.85 16 16 C 0.09 3.14 4.83 86.86 0.42 3.56 16 17 N -0.61 -18.65 3.08 -788.04 -2.43 -21.08 16 18 C 0.53 16.34 5.49 87.66 0.48 16.82 16 19 O -0.57 -19.62 12.55 -3.06 -0.04 -19.66 16 20 C -0.09 -2.26 1.63 -11.54 -0.02 -2.28 16 21 C -0.08 -1.99 2.54 -10.79 -0.03 -2.02 16 22 C -0.11 -2.07 5.19 30.60 0.16 -1.92 16 23 C -0.08 -1.37 3.19 -10.79 -0.03 -1.40 16 24 C -0.10 -1.69 5.19 30.60 0.16 -1.53 16 25 C -0.08 -1.75 3.20 -10.79 -0.03 -1.78 16 26 C -0.11 -2.55 4.97 30.60 0.15 -2.39 16 27 C -0.12 -2.69 4.90 30.60 0.15 -2.54 16 28 C -0.06 -1.36 2.36 -10.79 -0.03 -1.39 16 29 C -0.10 -1.78 5.19 30.59 0.16 -1.62 16 30 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.05 1.63 6.73 -2.39 -0.02 1.61 16 32 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.09 2.58 7.83 -2.39 -0.02 2.57 16 34 H 0.07 2.23 8.00 -2.39 -0.02 2.21 16 35 H 0.36 17.82 6.59 -92.71 -0.61 17.21 16 36 H 0.25 14.64 6.77 -92.71 -0.63 14.01 16 37 H 0.06 2.08 7.07 -2.38 -0.02 2.06 16 38 H 0.07 2.30 7.36 -2.39 -0.02 2.28 16 39 H 0.09 2.33 7.85 -2.38 -0.02 2.31 16 40 H 0.07 1.85 4.99 -2.38 -0.01 1.84 16 41 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 43 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 47 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 48 H 0.03 0.98 7.22 -2.39 -0.02 0.96 16 49 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 50 H 0.06 1.82 5.51 -2.39 -0.01 1.81 16 51 H 0.06 1.52 8.10 -2.38 -0.02 1.50 16 52 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 53 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -62.78 378.16 2.66 -60.12 By element: Atomic # 1 Polarization: 38.99 SS G_CDS: 0.42 Total: 39.41 kcal Atomic # 6 Polarization: -20.39 SS G_CDS: 4.02 Total: -16.37 kcal Atomic # 7 Polarization: -111.42 SS G_CDS: -3.79 Total: -115.21 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: -0.04 Total: -19.66 kcal Atomic # 14 Polarization: 49.66 SS G_CDS: 2.05 Total: 51.71 kcal Total: -62.78 2.66 -60.12 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988956769.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.609 kcal (2) G-P(sol) polarization free energy of solvation -62.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds