Wall clock time and date at job start Tue Mar 31 2020 16:51:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47657 * 2 1 4 4 C 1.53001 * 109.47096 * 239.99443 * 2 1 3 5 5 C 1.53004 * 109.46709 * 120.00100 * 2 1 3 6 6 C 1.54407 * 129.01506 * 59.99618 * 5 2 1 7 7 C 1.54415 * 78.89634 * 180.64244 * 6 5 2 8 8 C 1.50699 * 129.01676 * 180.64473 * 7 6 5 9 9 O 1.21277 * 120.00100 * 359.97438 * 8 7 6 10 10 N 1.34775 * 119.99930 * 180.02562 * 8 7 6 11 11 C 1.49117 * 134.78570 * 0.74737 * 10 8 7 12 12 C 1.54646 * 85.34579 * 153.81169 * 11 10 8 13 13 H 1.09003 * 114.43682 * 139.62931 * 12 11 10 14 14 C 1.53019 * 110.83906 * 269.43340 * 12 11 10 15 15 C 1.53096 * 109.44539 * 143.89385 * 14 12 11 16 16 N 1.46621 * 108.01028 * 301.02050 * 15 14 12 17 17 C 1.36936 * 119.88965 * 237.31458 * 16 15 14 18 18 H 1.08001 * 120.00221 * 26.14920 * 17 16 15 19 19 C 1.38816 * 119.99925 * 206.15451 * 17 16 15 20 20 N 1.31620 * 119.99617 * 12.73475 * 19 17 16 21 21 Si 1.86794 * 120.00042 * 192.74170 * 19 17 16 22 22 H 1.48496 * 109.47232 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.46953 * 119.99747 * 21 19 17 24 24 H 1.48507 * 109.46982 * 239.99748 * 21 19 17 25 25 C 1.45680 * 120.21675 * 57.32864 * 16 15 14 26 26 C 1.46816 * 135.01353 * 180.02562 * 10 8 7 27 27 H 1.08996 * 110.91738 * 94.51433 * 26 10 8 28 28 C 1.54896 * 84.49050 * 43.15555 * 7 6 5 29 29 C 1.54893 * 84.49455 * 318.13704 * 7 6 5 30 30 H 1.09007 * 109.46978 * 300.00643 * 1 2 3 31 31 H 1.09000 * 109.47097 * 59.99563 * 1 2 3 32 32 H 1.08997 * 109.47517 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47382 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.47104 * 299.99817 * 3 2 1 35 35 H 1.08998 * 109.47507 * 59.99867 * 3 2 1 36 36 H 1.09002 * 109.47317 * 300.00958 * 4 2 1 37 37 H 1.09005 * 109.46957 * 60.00242 * 4 2 1 38 38 H 1.08999 * 109.47103 * 180.02562 * 4 2 1 39 39 H 1.09008 * 114.93211 * 68.15889 * 6 5 2 40 40 H 1.08994 * 114.99029 * 293.13174 * 6 5 2 41 41 H 1.08995 * 114.19465 * 39.75081 * 11 10 8 42 42 H 1.08995 * 113.80732 * 267.82977 * 11 10 8 43 43 H 1.09001 * 109.47145 * 263.88499 * 14 12 11 44 44 H 1.08993 * 109.47158 * 23.89948 * 14 12 11 45 45 H 1.09002 * 109.75632 * 60.64934 * 15 14 12 46 46 H 1.09001 * 109.75641 * 181.39133 * 15 14 12 47 47 H 0.96995 * 119.99990 * 179.97438 * 20 19 17 48 48 H 1.09002 * 108.71051 * 81.74705 * 25 16 15 49 49 H 1.08993 * 108.71475 * 199.89764 * 25 16 15 50 50 H 1.08994 * 114.98006 * 69.39241 * 28 7 6 51 51 H 1.08995 * 114.97516 * 204.56991 * 28 7 6 52 52 H 1.09002 * 114.98001 * 155.42762 * 29 7 6 53 53 H 1.09006 * 114.97405 * 290.60636 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 2.0399 -0.7213 1.2493 6 6 1.7982 -2.1793 1.6966 7 6 2.6729 -1.6537 2.8555 8 6 3.1646 -2.3830 4.0792 9 8 2.8739 -3.5482 4.2484 10 7 3.9264 -1.7400 4.9862 11 6 4.4555 -0.3522 5.1189 12 6 4.4659 -0.6363 6.6390 13 1 5.3390 -0.2490 7.1642 14 6 3.1386 -0.2237 7.2789 15 6 2.7787 -1.2139 8.3897 16 7 2.6829 -2.5497 7.7927 17 6 1.5223 -3.2671 7.9084 18 1 0.5809 -2.7540 8.0381 19 6 1.5558 -4.6540 7.8589 20 7 2.7052 -5.2883 7.9535 21 14 -0.0303 -5.6200 7.6578 22 1 -1.1760 -4.6789 7.5758 23 1 0.0368 -6.4284 6.4140 24 1 -0.2126 -6.5206 8.8245 25 6 3.8185 -3.1162 7.0773 26 6 4.5661 -2.1106 6.2547 27 1 5.6004 -2.4148 6.0946 28 6 1.7755 -0.3946 2.7638 29 6 3.4907 -0.9714 1.7309 30 1 -0.3633 0.5140 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 3.1301 1.4423 0.0005 34 1 1.6768 1.9562 -0.8900 35 1 1.6768 1.9563 0.8899 36 1 1.6765 -1.7490 -1.2492 37 1 1.6766 -0.2076 -2.1392 38 1 3.1300 -0.7218 -1.2489 39 1 2.2710 -2.9363 1.0709 40 1 0.7687 -2.4132 1.9675 41 1 3.7515 0.4246 4.8209 42 1 5.4482 -0.2169 4.6895 43 1 3.2341 0.7768 7.7008 44 1 2.3542 -0.2258 6.5221 45 1 3.5550 -1.2072 9.1549 46 1 1.8215 -0.9388 8.8327 47 1 2.7286 -6.2573 7.9193 48 1 4.5113 -3.5427 7.8027 49 1 3.4595 -3.9136 6.4268 50 1 0.7448 -0.5394 3.0873 51 1 2.2301 0.5228 3.1375 52 1 4.0523 -0.0899 2.0402 53 1 4.0549 -1.6527 1.0939 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084860835.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:51:38 Heat of formation + Delta-G solvation = 95.968324 kcal Electronic energy + Delta-G solvation = -30915.099970 eV Core-core repulsion = 27177.211313 eV Total energy + Delta-G solvation = -3737.888657 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 332.221 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -43.18508 -41.50202 -38.85703 -36.99263 -36.78671 -33.98031 -31.98478 -30.80253 -28.68104 -28.31967 -28.26987 -26.44105 -26.41553 -26.22596 -25.69311 -24.24168 -22.75371 -22.18343 -20.25604 -19.42678 -18.60301 -18.21261 -17.39187 -17.30638 -17.01512 -16.20727 -15.71807 -15.46518 -15.32249 -15.23721 -15.08795 -14.93937 -14.81594 -14.72524 -14.39521 -14.18878 -13.90198 -13.48870 -13.20599 -13.13450 -13.10888 -12.79857 -12.73358 -12.51848 -12.46961 -12.24460 -12.23064 -12.18076 -12.12025 -11.99129 -11.86645 -11.72204 -11.70814 -11.64078 -11.49530 -11.17994 -11.03429 -10.96352 -10.66342 -10.23585 -9.51658 -8.68571 -7.87595 -5.32723 1.31410 1.37947 1.44013 1.65553 1.89594 2.45009 3.15764 3.25237 3.28278 3.29519 3.41644 3.47903 3.54105 3.64482 3.71427 3.87313 4.00888 4.23216 4.24099 4.24955 4.43233 4.47265 4.52610 4.60358 4.61158 4.63100 4.70935 4.73254 4.76645 4.80349 4.82810 4.88646 4.91538 4.93661 4.96156 4.97100 5.00889 5.05903 5.13014 5.13521 5.14278 5.21923 5.27517 5.31556 5.42912 5.50521 5.53643 5.54427 5.57970 5.70567 5.82783 6.38135 6.92854 7.16885 7.36085 7.93923 8.33193 9.16725 Molecular weight = 332.22amu Principal moments of inertia in cm(-1) A = 0.013355 B = 0.004012 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.053610 B = 6977.160181 C = 8050.115189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.003 4.003 3 C -0.136 4.136 4 C -0.140 4.140 5 C -0.070 4.070 6 C -0.107 4.107 7 C -0.180 4.180 8 C 0.576 3.424 9 O -0.592 6.592 10 N -0.632 5.632 11 C 0.114 3.886 12 C -0.098 4.098 13 H 0.127 0.873 14 C -0.105 4.105 15 C 0.138 3.862 16 N -0.602 5.602 17 C -0.257 4.257 18 H 0.061 0.939 19 C -0.046 4.046 20 N -0.932 5.932 21 Si 0.955 3.045 22 H -0.265 1.265 23 H -0.305 1.305 24 H -0.281 1.281 25 C 0.180 3.820 26 C 0.110 3.890 27 H 0.087 0.913 28 C -0.090 4.090 29 C -0.077 4.077 30 H 0.054 0.946 31 H 0.074 0.926 32 H 0.043 0.957 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.058 0.942 36 H 0.044 0.956 37 H 0.073 0.927 38 H 0.060 0.940 39 H 0.065 0.935 40 H 0.054 0.946 41 H 0.100 0.900 42 H 0.117 0.883 43 H 0.102 0.898 44 H 0.042 0.958 45 H 0.028 0.972 46 H 0.051 0.949 47 H 0.243 0.757 48 H -0.009 1.009 49 H 0.053 0.947 50 H 0.057 0.943 51 H 0.100 0.900 52 H 0.104 0.896 53 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.964 21.075 -16.869 27.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.003 4.003 3 C -0.193 4.193 4 C -0.198 4.198 5 C -0.070 4.070 6 C -0.145 4.145 7 C -0.183 4.183 8 C 0.366 3.634 9 O -0.473 6.473 10 N -0.366 5.366 11 C -0.007 4.007 12 C -0.116 4.116 13 H 0.144 0.856 14 C -0.144 4.144 15 C 0.013 3.987 16 N -0.326 5.326 17 C -0.387 4.387 18 H 0.078 0.922 19 C -0.241 4.241 20 N -0.579 5.579 21 Si 0.784 3.216 22 H -0.190 1.190 23 H -0.233 1.233 24 H -0.207 1.207 25 C 0.054 3.946 26 C 0.005 3.995 27 H 0.105 0.895 28 C -0.127 4.127 29 C -0.114 4.114 30 H 0.073 0.927 31 H 0.093 0.907 32 H 0.062 0.938 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.063 0.937 37 H 0.092 0.908 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.072 0.928 41 H 0.118 0.882 42 H 0.135 0.865 43 H 0.120 0.880 44 H 0.060 0.940 45 H 0.046 0.954 46 H 0.070 0.930 47 H 0.052 0.948 48 H 0.008 0.992 49 H 0.072 0.928 50 H 0.076 0.924 51 H 0.119 0.881 52 H 0.122 0.878 53 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.716 20.212 -16.905 26.611 hybrid contribution -0.931 -2.212 0.463 2.444 sum 2.786 18.001 -16.442 24.538 Atomic orbital electron populations 1.21852 0.94051 1.01539 1.02525 1.19619 0.95247 0.95351 0.90116 1.21806 1.01587 0.93329 1.02619 1.21839 1.01444 0.99902 0.96583 1.24272 0.95651 0.93356 0.93725 1.23887 0.98144 0.97846 0.94603 1.23805 1.01719 0.99350 0.93469 1.18990 0.77540 0.84939 0.81944 1.90736 1.59503 1.19607 1.77464 1.50252 1.49463 1.15328 1.21554 1.24047 1.00434 0.82404 0.93782 1.22842 1.00165 0.92278 0.96363 0.85553 1.21742 0.95267 0.99363 0.98046 1.21006 0.98903 0.84677 0.94131 1.43716 1.12087 1.16081 1.60707 1.19422 0.86726 0.88727 1.43829 0.92162 1.25672 0.99086 0.97999 1.01375 1.70178 1.25332 1.06680 1.55733 0.85384 0.80693 0.78983 0.76559 1.18971 1.23289 1.20736 1.19524 0.88289 0.93950 0.92857 1.22551 0.95704 0.98171 0.83024 0.89543 1.24494 0.97760 0.94961 0.95525 1.23992 0.95450 0.99439 0.92508 0.92729 0.90668 0.93821 0.91815 0.91087 0.92315 0.93697 0.90774 0.92109 0.91634 0.92753 0.88172 0.86502 0.87966 0.93956 0.95419 0.92995 0.94751 0.99159 0.92825 0.92443 0.88133 0.87779 0.91071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 8.47 71.98 0.61 -1.54 16 2 C 0.00 -0.05 1.02 -52.18 -0.05 -0.10 16 3 C -0.14 -1.45 8.47 71.98 0.61 -0.84 16 4 C -0.14 -1.90 8.47 71.98 0.61 -1.29 16 5 C -0.07 -1.40 1.67 -62.11 -0.10 -1.50 16 6 C -0.11 -3.14 7.78 30.61 0.24 -2.91 16 7 C -0.18 -5.60 3.14 -63.68 -0.20 -5.80 16 8 C 0.58 24.64 8.09 87.66 0.71 25.35 16 9 O -0.59 -33.71 16.10 -3.02 -0.05 -33.76 16 10 N -0.63 -22.86 3.39 -817.72 -2.77 -25.63 16 11 C 0.11 2.48 8.07 86.36 0.70 3.18 16 12 C -0.10 -2.61 4.35 -10.31 -0.04 -2.65 16 13 H 0.13 2.47 8.14 -2.39 -0.02 2.45 16 14 C -0.11 -3.15 5.67 30.63 0.17 -2.98 16 15 C 0.14 5.64 6.47 86.39 0.56 6.20 16 16 N -0.60 -32.39 3.02 -709.41 -2.14 -34.53 16 17 C -0.26 -15.58 9.53 84.03 0.80 -14.78 16 18 H 0.06 3.59 7.84 -2.91 -0.02 3.56 16 19 C -0.05 -2.90 4.99 84.86 0.42 -2.47 16 20 N -0.93 -61.60 10.91 21.65 0.24 -61.36 16 21 Si 0.95 51.27 29.57 68.60 2.03 53.30 16 22 H -0.27 -13.43 7.11 99.48 0.71 -12.73 16 23 H -0.30 -17.07 7.11 99.48 0.71 -16.37 16 24 H -0.28 -14.45 7.11 99.48 0.71 -13.74 16 25 C 0.18 9.66 4.53 85.53 0.39 10.04 16 26 C 0.11 4.25 4.24 43.76 0.19 4.44 16 27 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 28 C -0.09 -2.14 7.95 31.90 0.25 -1.89 16 29 C -0.08 -1.60 7.84 31.09 0.24 -1.35 16 30 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 31 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 38 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.07 1.96 7.94 -2.38 -0.02 1.94 16 40 H 0.05 1.77 7.91 -2.39 -0.02 1.75 16 41 H 0.10 1.76 7.47 -2.39 -0.02 1.75 16 42 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 44 H 0.04 1.44 7.71 -2.39 -0.02 1.42 16 45 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 46 H 0.05 2.12 7.89 -2.39 -0.02 2.10 16 47 H 0.24 15.73 8.31 -92.71 -0.77 14.96 16 48 H -0.01 -0.55 7.95 -2.39 -0.02 -0.57 16 49 H 0.05 3.47 4.76 -2.39 -0.01 3.46 16 50 H 0.06 1.57 7.91 -2.39 -0.02 1.55 16 51 H 0.10 1.86 7.48 -2.39 -0.02 1.84 16 52 H 0.10 1.61 7.97 -2.39 -0.02 1.59 16 53 H 0.07 1.52 7.93 -2.38 -0.02 1.50 16 Total: -1.00 -86.26 408.11 4.26 -82.01 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: 0.86 Total: 10.89 kcal Atomic # 6 Polarization: 3.00 SS G_CDS: 6.10 Total: 9.10 kcal Atomic # 7 Polarization: -116.85 SS G_CDS: -4.68 Total: -121.52 kcal Atomic # 8 Polarization: -33.71 SS G_CDS: -0.05 Total: -33.76 kcal Atomic # 14 Polarization: 51.27 SS G_CDS: 2.03 Total: 53.30 kcal Total: -86.26 4.26 -82.01 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084860835.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.975 kcal (2) G-P(sol) polarization free energy of solvation -86.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds