Wall clock time and date at job start Tue Mar 31 2020 17:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.46499 * 119.99660 * 2 1 4 4 C 1.53006 * 109.46498 * 274.12992 * 3 2 1 5 5 H 1.09000 * 112.73904 * 44.14142 * 4 3 2 6 6 C 1.53491 * 113.46732 * 273.38688 * 4 3 2 7 7 C 1.53607 * 83.30684 * 219.17295 * 6 4 3 8 8 N 1.47067 * 88.00688 * 26.02342 * 7 6 4 9 9 C 1.36938 * 136.05924 * 152.89033 * 8 7 6 10 10 H 1.07996 * 119.99750 * 175.62404 * 9 8 7 11 11 C 1.38810 * 120.00014 * 355.62505 * 9 8 7 12 12 N 1.31620 * 120.00012 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 119.99947 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47216 * 0.02562 * 13 11 9 15 15 H 1.48502 * 109.47160 * 119.99662 * 13 11 9 16 16 H 1.48496 * 109.47113 * 239.99733 * 13 11 9 17 17 C 1.34772 * 120.00064 * 179.71771 * 2 1 3 18 18 O 1.21281 * 119.99601 * 180.02562 * 17 2 1 19 19 C 1.50707 * 120.00136 * 0.02562 * 17 2 1 20 20 C 1.52999 * 109.46763 * 299.99970 * 19 17 2 21 21 C 1.53000 * 109.46606 * 179.97438 * 20 19 17 22 22 C 1.53002 * 109.47456 * 59.99973 * 21 20 19 23 23 C 1.52999 * 109.47244 * 59.99735 * 22 21 20 24 24 C 1.53009 * 109.47197 * 300.00332 * 23 22 21 25 25 C 1.52999 * 109.47081 * 299.99612 * 20 19 17 26 26 C 1.52998 * 109.46871 * 300.00062 * 24 23 22 27 27 C 1.52993 * 109.46993 * 179.97438 * 19 17 2 28 28 C 1.53000 * 109.47044 * 180.02562 * 27 19 17 29 29 H 1.08998 * 109.46988 * 272.29312 * 1 2 3 30 30 H 1.08998 * 109.47171 * 32.29347 * 1 2 3 31 31 H 1.09003 * 109.46784 * 152.29726 * 1 2 3 32 32 H 1.08994 * 109.47189 * 34.12612 * 3 2 1 33 33 H 1.08992 * 109.47279 * 154.13468 * 3 2 1 34 34 H 1.08994 * 114.21036 * 332.74780 * 6 4 3 35 35 H 1.09000 * 114.20193 * 105.57105 * 6 4 3 36 36 H 1.09005 * 113.41827 * 271.24162 * 7 6 4 37 37 H 1.09007 * 113.56084 * 140.83020 * 7 6 4 38 38 H 0.96998 * 119.99791 * 180.02562 * 12 11 9 39 39 H 1.09000 * 109.46935 * 59.99651 * 19 17 2 40 40 H 1.08993 * 109.47811 * 60.00240 * 20 19 17 41 41 H 1.08996 * 109.47354 * 300.00037 * 21 20 19 42 42 H 1.09005 * 109.46981 * 179.97438 * 21 20 19 43 43 H 1.08994 * 109.47573 * 179.97438 * 22 21 20 44 44 H 1.08991 * 109.47761 * 180.02562 * 23 22 21 45 45 H 1.09002 * 109.47376 * 59.99620 * 23 22 21 46 46 H 1.08996 * 109.47440 * 179.97438 * 24 23 22 47 47 H 1.09005 * 109.47249 * 180.02562 * 25 20 19 48 48 H 1.09004 * 109.47261 * 60.00717 * 25 20 19 49 49 H 1.09003 * 109.47344 * 299.99472 * 26 24 23 50 50 H 1.09004 * 109.46678 * 179.97438 * 26 24 23 51 51 H 1.09007 * 109.47462 * 299.99821 * 27 19 17 52 52 H 1.08996 * 109.47354 * 60.00118 * 28 27 19 53 53 H 1.09002 * 109.47390 * 179.97438 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3624 1.7623 -1.4389 5 1 1.4480 1.6669 -2.0244 6 6 3.6015 1.1917 -2.1425 7 6 3.7041 2.6106 -2.7220 8 7 2.9828 3.0923 -1.5343 9 6 2.9181 4.2635 -0.8277 10 1 2.2256 4.3600 -0.0046 11 6 3.7426 5.3267 -1.1694 12 7 4.5869 5.2089 -2.1722 13 14 3.6538 6.9246 -0.2060 14 1 2.6320 6.8011 0.8646 15 1 4.9774 7.2089 0.4044 16 1 3.2818 8.0339 -1.1204 17 6 2.1390 -1.1671 0.0058 18 8 3.3518 -1.1670 0.0062 19 6 1.3855 -2.4723 0.0116 20 6 0.5054 -2.5474 1.2609 21 6 -0.2600 -3.8722 1.2665 22 6 0.7338 -5.0355 1.2720 23 6 1.6131 -4.9492 2.5211 24 6 2.3786 -3.6244 2.5155 25 6 1.3846 -2.4605 2.5100 26 6 3.2586 -3.5492 1.2662 27 6 2.3797 -3.6351 0.0168 28 6 1.6148 -4.9601 0.0221 29 1 -0.3633 0.0411 1.0268 30 1 -0.3633 0.8687 -0.5490 31 1 -0.3633 -0.9099 -0.4778 32 1 1.6424 2.0087 0.5765 33 1 3.1799 1.1212 0.4483 34 1 4.4150 0.9243 -1.4683 35 1 3.3806 0.4215 -2.8816 36 1 3.1476 2.7407 -3.6502 37 1 4.7271 2.9811 -2.7886 38 1 5.1633 5.9517 -2.4106 39 1 0.7591 -2.5342 -0.8783 40 1 -0.2029 -1.7191 1.2568 41 1 -0.8863 -3.9337 0.3766 42 1 -0.8867 -3.9260 2.1567 43 1 0.1886 -5.9792 1.2764 44 1 2.3213 -5.7776 2.5249 45 1 0.9861 -5.0027 3.4112 46 1 3.0046 -3.5627 3.4056 47 1 0.7577 -2.5145 3.4001 48 1 1.9296 -1.5165 2.5059 49 1 3.9667 -4.3779 1.2701 50 1 3.8035 -2.6052 1.2621 51 1 3.0064 -3.5814 -0.8735 52 1 0.9885 -5.0217 -0.8678 53 1 2.3231 -5.7886 0.0253 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085642679.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:14 Heat of formation + Delta-G solvation = -9.366059 kcal Electronic energy + Delta-G solvation = -31043.056847 eV Core-core repulsion = 27300.600549 eV Total energy + Delta-G solvation = -3742.456298 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 332.221 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.80818 -40.53257 -39.35973 -36.58549 -34.34501 -33.71873 -33.47086 -33.28112 -30.03491 -29.87186 -27.88661 -26.86851 -26.61708 -25.41738 -24.04196 -22.50516 -22.34426 -22.24731 -21.03371 -20.22118 -18.77200 -18.41253 -17.64701 -17.24015 -16.79209 -16.42637 -16.03444 -15.86925 -15.62035 -15.28709 -15.03396 -14.70997 -14.39800 -14.25130 -14.19748 -14.05595 -13.82290 -13.75993 -13.62369 -13.47515 -13.40854 -13.24163 -13.00324 -12.67780 -12.65309 -12.48844 -12.23003 -12.15555 -11.80878 -11.76819 -11.72153 -11.67929 -11.64011 -11.60031 -11.22609 -10.97256 -10.85500 -10.52049 -10.48021 -10.13413 -9.50410 -8.91318 -7.89498 -5.24827 1.43900 1.46180 1.55871 1.78284 2.07462 2.48071 3.30260 3.39964 3.53096 3.59460 3.63859 3.85167 3.96141 4.15121 4.22957 4.23611 4.26482 4.27853 4.34940 4.38518 4.41091 4.44825 4.46600 4.50893 4.53665 4.61441 4.65968 4.77252 4.82341 4.84109 4.85431 4.90728 4.98374 5.00005 5.01759 5.06926 5.13759 5.17560 5.18896 5.22241 5.25648 5.26263 5.29260 5.39426 5.49261 5.53105 5.56871 5.65360 5.65805 5.71845 5.75162 5.93561 6.56869 6.89034 7.35830 7.59850 8.61255 9.27902 Molecular weight = 332.22amu Principal moments of inertia in cm(-1) A = 0.024161 B = 0.002936 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.607246 B = 9535.983060 C = 9769.934923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.610 5.610 3 C 0.132 3.868 4 C 0.140 3.860 5 H 0.056 0.944 6 C -0.131 4.131 7 C 0.143 3.857 8 N -0.629 5.629 9 C -0.222 4.222 10 H 0.089 0.911 11 C -0.072 4.072 12 N -0.956 5.956 13 Si 0.981 3.019 14 H -0.260 1.260 15 H -0.295 1.295 16 H -0.292 1.292 17 C 0.512 3.488 18 O -0.572 6.572 19 C -0.087 4.087 20 C -0.084 4.084 21 C -0.101 4.101 22 C -0.085 4.085 23 C -0.103 4.103 24 C -0.086 4.086 25 C -0.109 4.109 26 C -0.120 4.120 27 C -0.064 4.064 28 C -0.103 4.103 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.100 0.900 32 H 0.070 0.930 33 H 0.054 0.946 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.020 0.980 37 H 0.039 0.961 38 H 0.247 0.753 39 H 0.113 0.887 40 H 0.097 0.903 41 H 0.081 0.919 42 H 0.078 0.922 43 H 0.088 0.912 44 H 0.060 0.940 45 H 0.071 0.929 46 H 0.056 0.944 47 H 0.077 0.923 48 H 0.029 0.971 49 H 0.054 0.946 50 H 0.054 0.946 51 H 0.052 0.948 52 H 0.075 0.925 53 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.865 -24.585 8.048 29.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.343 5.343 3 C 0.008 3.992 4 C 0.033 3.967 5 H 0.074 0.926 6 C -0.169 4.169 7 C 0.017 3.983 8 N -0.355 5.355 9 C -0.350 4.350 10 H 0.107 0.893 11 C -0.264 4.264 12 N -0.605 5.605 13 Si 0.809 3.191 14 H -0.184 1.184 15 H -0.222 1.222 16 H -0.219 1.219 17 C 0.302 3.698 18 O -0.451 6.451 19 C -0.108 4.108 20 C -0.102 4.102 21 C -0.138 4.138 22 C -0.103 4.103 23 C -0.140 4.140 24 C -0.105 4.105 25 C -0.146 4.146 26 C -0.158 4.158 27 C -0.083 4.083 28 C -0.140 4.140 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.118 0.882 32 H 0.088 0.912 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.092 0.908 36 H 0.038 0.962 37 H 0.057 0.943 38 H 0.056 0.944 39 H 0.131 0.869 40 H 0.115 0.885 41 H 0.099 0.901 42 H 0.097 0.903 43 H 0.106 0.894 44 H 0.079 0.921 45 H 0.089 0.911 46 H 0.075 0.925 47 H 0.096 0.904 48 H 0.047 0.953 49 H 0.073 0.927 50 H 0.072 0.928 51 H 0.071 0.929 52 H 0.094 0.906 53 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -14.185 -24.238 8.158 29.245 hybrid contribution 0.913 1.683 0.012 1.915 sum -13.273 -22.555 8.169 27.416 Atomic orbital electron populations 1.22216 0.77559 1.04473 1.02956 1.47913 1.08194 1.05001 1.73175 1.21335 0.96587 0.84555 0.96764 1.22493 0.95076 0.84149 0.94986 0.92646 1.23344 0.98296 0.95737 0.99523 1.22101 0.96618 0.90201 0.89389 1.45904 1.51009 1.08997 1.29586 1.19348 1.16765 0.89107 1.09755 0.89306 1.25697 0.98781 1.01955 1.00010 1.70054 1.26983 1.31923 1.31519 0.84976 0.77304 0.78993 0.77868 1.18430 1.22207 1.21917 1.21297 0.87797 0.86116 0.74619 1.90627 1.16063 1.87553 1.50877 1.21345 0.97624 0.90243 1.01568 1.21338 0.96405 1.00679 0.91812 1.21545 0.96843 0.92001 1.03421 1.21114 0.95912 0.99326 0.93998 1.21521 0.98406 0.95688 0.98392 1.21048 0.96391 0.96029 0.97016 1.21541 0.97543 0.96931 0.98633 1.21701 0.97736 1.01615 0.94717 1.20772 0.95526 0.94259 0.97736 1.21567 0.98521 0.95270 0.98687 0.90777 0.91129 0.88181 0.91180 0.92747 0.91914 0.90846 0.96189 0.94285 0.94416 0.86938 0.88476 0.90061 0.90297 0.89388 0.92085 0.91052 0.92523 0.90447 0.95250 0.92743 0.92767 0.92944 0.90628 0.91686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.24 8.82 127.77 1.13 2.37 16 2 N -0.61 -17.05 2.87 -846.74 -2.43 -19.48 16 3 C 0.13 4.93 5.41 86.38 0.47 5.40 16 4 C 0.14 5.89 4.31 41.79 0.18 6.07 16 5 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 6 C -0.13 -5.67 7.92 30.96 0.25 -5.43 16 7 C 0.14 7.38 7.51 83.21 0.62 8.01 16 8 N -0.63 -33.55 3.65 -713.29 -2.60 -36.15 16 9 C -0.22 -12.64 10.55 84.03 0.89 -11.76 16 10 H 0.09 4.74 7.83 -2.91 -0.02 4.72 16 11 C -0.07 -4.21 5.50 84.86 0.47 -3.74 16 12 N -0.96 -60.08 11.43 21.65 0.25 -59.84 16 13 Si 0.98 46.73 29.55 68.60 2.03 48.76 16 14 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 15 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 16 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 17 C 0.51 14.87 5.56 87.66 0.49 15.36 16 18 O -0.57 -21.86 13.08 -3.03 -0.04 -21.90 16 19 C -0.09 -1.71 1.47 -11.54 -0.02 -1.73 16 20 C -0.08 -1.25 2.35 -10.79 -0.03 -1.28 16 21 C -0.10 -1.00 5.19 30.59 0.16 -0.84 16 22 C -0.09 -0.96 3.20 -10.76 -0.03 -0.99 16 23 C -0.10 -1.40 5.19 30.60 0.16 -1.24 16 24 C -0.09 -1.68 3.20 -10.77 -0.03 -1.71 16 25 C -0.11 -2.08 4.98 30.61 0.15 -1.92 16 26 C -0.12 -2.91 4.90 30.59 0.15 -2.76 16 27 C -0.06 -1.34 2.36 -10.80 -0.03 -1.37 16 28 C -0.10 -1.45 5.20 30.63 0.16 -1.29 16 29 H 0.07 1.08 7.08 -2.39 -0.02 1.06 16 30 H 0.07 1.32 8.09 -2.39 -0.02 1.30 16 31 H 0.10 1.21 5.85 -2.39 -0.01 1.20 16 32 H 0.07 2.58 8.10 -2.39 -0.02 2.56 16 33 H 0.05 2.39 7.03 -2.39 -0.02 2.37 16 34 H 0.06 2.97 7.94 -2.39 -0.02 2.95 16 35 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 36 H 0.02 1.03 8.14 -2.38 -0.02 1.01 16 37 H 0.04 2.28 6.94 -2.38 -0.02 2.26 16 38 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 39 H 0.11 1.77 7.41 -2.39 -0.02 1.75 16 40 H 0.10 1.22 4.56 -2.39 -0.01 1.21 16 41 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 42 H 0.08 0.63 8.14 -2.38 -0.02 0.61 16 43 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 45 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 47 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 48 H 0.03 0.75 7.22 -2.39 -0.02 0.73 16 49 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 50 H 0.05 1.76 5.51 -2.39 -0.01 1.74 16 51 H 0.05 1.32 8.10 -2.38 -0.02 1.30 16 52 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 53 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -73.81 381.34 3.20 -70.60 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: 0.87 Total: 16.87 kcal Atomic # 6 Polarization: -3.99 SS G_CDS: 5.13 Total: 1.14 kcal Atomic # 7 Polarization: -110.68 SS G_CDS: -4.79 Total: -115.47 kcal Atomic # 8 Polarization: -21.86 SS G_CDS: -0.04 Total: -21.90 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 2.03 Total: 48.76 kcal Total: -73.81 3.20 -70.60 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085642679.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.238 kcal (2) G-P(sol) polarization free energy of solvation -73.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds