Wall clock time and date at job start Tue Mar 31 2020 17:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46498 * 120.00021 * 2 1 4 4 C 1.52994 * 109.47182 * 84.74151 * 3 2 1 5 5 H 1.08999 * 112.73786 * 316.14485 * 4 3 2 6 6 C 1.53494 * 113.46711 * 86.96848 * 4 3 2 7 7 C 1.53500 * 83.34521 * 140.84785 * 6 4 3 8 8 N 1.47063 * 113.46662 * 185.40361 * 4 3 2 9 9 C 1.36935 * 136.06142 * 38.13775 * 8 4 3 10 10 H 1.08004 * 119.99856 * 353.11692 * 9 8 4 11 11 C 1.38811 * 120.00551 * 173.11325 * 9 8 4 12 12 N 1.31623 * 119.99863 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 120.00242 * 179.97438 * 11 9 8 14 14 H 1.48495 * 109.47150 * 90.00314 * 13 11 9 15 15 H 1.48502 * 109.47087 * 210.00384 * 13 11 9 16 16 H 1.48502 * 109.47374 * 330.00033 * 13 11 9 17 17 C 1.34777 * 119.99920 * 180.02562 * 2 1 3 18 18 O 1.21279 * 120.00157 * 179.97438 * 17 2 1 19 19 C 1.50699 * 119.99896 * 359.97438 * 17 2 1 20 20 C 1.52998 * 109.47109 * 299.99762 * 19 17 2 21 21 C 1.52998 * 109.47281 * 180.02562 * 20 19 17 22 22 C 1.52995 * 109.47139 * 60.00304 * 21 20 19 23 23 C 1.52997 * 109.47471 * 59.99797 * 22 21 20 24 24 C 1.52998 * 109.47104 * 300.00224 * 23 22 21 25 25 C 1.52998 * 109.47004 * 59.99913 * 24 23 22 26 26 C 1.52998 * 109.47281 * 299.99876 * 24 23 22 27 27 C 1.53002 * 109.47176 * 179.97438 * 19 17 2 28 28 C 1.52998 * 109.47344 * 179.97438 * 27 19 17 29 29 H 1.08996 * 109.46676 * 272.63192 * 1 2 3 30 30 H 1.08999 * 109.47159 * 152.63140 * 1 2 3 31 31 H 1.09003 * 109.47155 * 32.63572 * 1 2 3 32 32 H 1.09001 * 109.47234 * 204.74258 * 3 2 1 33 33 H 1.09002 * 109.47282 * 324.74031 * 3 2 1 34 34 H 1.09007 * 114.20609 * 254.43337 * 6 4 3 35 35 H 1.08995 * 114.20748 * 27.26309 * 6 4 3 36 36 H 1.08990 * 113.46961 * 219.15048 * 7 6 4 37 37 H 1.09004 * 113.51911 * 88.71656 * 7 6 4 38 38 H 0.97000 * 120.00227 * 179.97438 * 12 11 9 39 39 H 1.08998 * 109.47619 * 59.99799 * 19 17 2 40 40 H 1.09002 * 109.47286 * 60.00391 * 20 19 17 41 41 H 1.08998 * 109.47278 * 299.99934 * 21 20 19 42 42 H 1.09003 * 109.47154 * 180.02562 * 21 20 19 43 43 H 1.08998 * 109.47308 * 180.02562 * 22 21 20 44 44 H 1.09002 * 109.47163 * 179.97438 * 23 22 21 45 45 H 1.09003 * 109.46826 * 60.00071 * 23 22 21 46 46 H 1.09003 * 109.47079 * 179.97438 * 24 23 22 47 47 H 1.09003 * 109.47384 * 59.99873 * 25 24 23 48 48 H 1.09001 * 109.46929 * 180.02562 * 25 24 23 49 49 H 1.09002 * 109.46670 * 300.00361 * 26 24 23 50 50 H 1.09001 * 109.47336 * 180.02562 * 26 24 23 51 51 H 1.08994 * 109.47273 * 300.00029 * 27 19 17 52 52 H 1.08993 * 109.46832 * 59.99992 * 28 27 19 53 53 H 1.08998 * 109.47085 * 180.02562 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3380 1.7765 1.4364 5 1 1.4152 1.6823 2.0087 6 6 3.5696 1.2196 2.1638 7 6 3.6559 2.6430 2.7319 8 7 2.9509 3.1101 1.5287 9 6 2.8909 4.2747 0.8110 10 1 2.3527 4.3051 -0.1250 11 6 3.5217 5.4163 1.2862 12 7 4.1779 5.3792 2.4265 13 14 3.4404 7.0048 0.3066 14 1 2.2510 7.7868 0.7296 15 1 4.6695 7.8012 0.5521 16 1 3.3361 6.6891 -1.1407 17 6 2.1389 -1.1672 -0.0005 18 8 3.3517 -1.1673 -0.0010 19 6 1.3854 -2.4723 -0.0005 20 6 0.5063 -2.5536 1.2491 21 6 -0.2583 -3.8789 1.2494 22 6 0.7363 -5.0414 1.2491 23 6 1.6164 -4.9601 2.4980 24 6 2.3810 -3.6348 2.4976 25 6 1.3864 -2.4722 2.4980 26 6 3.2601 -3.5535 1.2480 27 6 2.3796 -3.6353 -0.0018 28 6 1.6146 -4.9603 -0.0012 29 1 -0.3632 0.0472 1.0266 30 1 -0.3633 -0.9126 -0.4724 31 1 -0.3634 0.8654 -0.5542 32 1 3.1875 1.1167 -0.4301 33 1 1.6525 2.0030 -0.5933 34 1 3.3422 0.4550 2.9066 35 1 4.3947 0.9509 1.5042 36 1 4.6763 3.0180 2.8102 37 1 3.0850 2.7802 3.6503 38 1 4.6190 6.1768 2.7585 39 1 0.7583 -2.5299 -0.8902 40 1 -0.2021 -1.7251 1.2495 41 1 -0.8853 -3.9368 0.3597 42 1 -0.8849 -3.9366 2.1395 43 1 0.1916 -5.9856 1.2489 44 1 2.3247 -5.7886 2.4979 45 1 0.9901 -5.0180 3.3882 46 1 3.0077 -3.5767 3.3876 47 1 0.7600 -2.5301 3.3882 48 1 1.9311 -1.5281 2.4973 49 1 3.9686 -4.3818 1.2478 50 1 3.8051 -2.6096 1.2480 51 1 3.0055 -3.5772 -0.8922 52 1 0.9870 -5.0178 -0.8904 53 1 2.3229 -5.7887 -0.0016 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085642680.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:17 Heat of formation + Delta-G solvation = -9.933954 kcal Electronic energy + Delta-G solvation = -31371.173934 eV Core-core repulsion = 27628.693010 eV Total energy + Delta-G solvation = -3742.480924 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 332.221 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.80362 -40.52444 -39.38036 -36.58560 -34.34618 -33.71585 -33.45999 -33.26322 -30.04767 -29.86923 -27.88280 -26.84238 -26.60915 -25.41450 -24.08397 -22.49710 -22.29986 -22.23699 -21.06124 -20.22406 -18.74514 -18.41087 -17.64181 -17.21888 -16.79423 -16.51048 -16.01341 -15.82541 -15.59546 -15.24946 -15.05436 -14.73458 -14.41732 -14.24052 -14.18983 -14.04695 -13.82115 -13.76725 -13.55221 -13.44110 -13.41512 -13.23276 -13.02001 -12.68093 -12.63350 -12.53006 -12.28851 -12.11732 -11.85532 -11.75532 -11.69567 -11.68529 -11.63319 -11.58095 -11.17622 -10.93901 -10.86983 -10.50629 -10.46095 -10.12270 -9.52874 -8.91367 -7.91824 -5.25433 1.44029 1.46973 1.55297 1.76524 2.09164 2.48302 3.28808 3.39653 3.54743 3.60337 3.65319 3.83961 3.96179 4.17859 4.22810 4.24893 4.27070 4.28390 4.34606 4.40634 4.43119 4.43885 4.47946 4.52453 4.55018 4.64228 4.65721 4.75126 4.80881 4.85336 4.86574 4.93948 4.97900 5.00289 5.02869 5.07347 5.15282 5.18893 5.20178 5.20875 5.26633 5.28428 5.30874 5.41917 5.46096 5.53451 5.58230 5.66770 5.67186 5.72210 5.74632 5.90690 6.56463 6.88287 7.35291 7.59020 8.60974 9.27303 Molecular weight = 332.22amu Principal moments of inertia in cm(-1) A = 0.025199 B = 0.003112 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.883060 B = 8994.327819 C = 9299.376437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.610 5.610 3 C 0.130 3.870 4 C 0.142 3.858 5 H 0.050 0.950 6 C -0.129 4.129 7 C 0.154 3.846 8 N -0.628 5.628 9 C -0.224 4.224 10 H 0.090 0.910 11 C -0.071 4.071 12 N -0.957 5.957 13 Si 0.981 3.019 14 H -0.283 1.283 15 H -0.297 1.297 16 H -0.265 1.265 17 C 0.512 3.488 18 O -0.572 6.572 19 C -0.086 4.086 20 C -0.084 4.084 21 C -0.101 4.101 22 C -0.085 4.085 23 C -0.103 4.103 24 C -0.086 4.086 25 C -0.111 4.111 26 C -0.120 4.120 27 C -0.063 4.063 28 C -0.102 4.102 29 H 0.066 0.934 30 H 0.103 0.897 31 H 0.074 0.926 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.027 0.973 37 H 0.018 0.982 38 H 0.248 0.752 39 H 0.115 0.885 40 H 0.095 0.905 41 H 0.082 0.918 42 H 0.076 0.924 43 H 0.088 0.912 44 H 0.061 0.939 45 H 0.068 0.932 46 H 0.054 0.946 47 H 0.072 0.928 48 H 0.032 0.968 49 H 0.054 0.946 50 H 0.055 0.945 51 H 0.054 0.946 52 H 0.077 0.923 53 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.665 -25.024 -3.840 28.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.343 5.343 3 C 0.005 3.995 4 C 0.035 3.965 5 H 0.068 0.932 6 C -0.167 4.167 7 C 0.028 3.972 8 N -0.354 5.354 9 C -0.352 4.352 10 H 0.108 0.892 11 C -0.263 4.263 12 N -0.606 5.606 13 Si 0.809 3.191 14 H -0.210 1.210 15 H -0.224 1.224 16 H -0.190 1.190 17 C 0.302 3.698 18 O -0.451 6.451 19 C -0.107 4.107 20 C -0.102 4.102 21 C -0.138 4.138 22 C -0.103 4.103 23 C -0.141 4.141 24 C -0.104 4.104 25 C -0.149 4.149 26 C -0.157 4.157 27 C -0.082 4.082 28 C -0.139 4.139 29 H 0.084 0.916 30 H 0.121 0.879 31 H 0.093 0.907 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.046 0.954 37 H 0.036 0.964 38 H 0.056 0.944 39 H 0.133 0.867 40 H 0.113 0.887 41 H 0.101 0.899 42 H 0.094 0.906 43 H 0.106 0.894 44 H 0.079 0.921 45 H 0.087 0.913 46 H 0.073 0.927 47 H 0.091 0.909 48 H 0.051 0.949 49 H 0.072 0.928 50 H 0.074 0.926 51 H 0.073 0.927 52 H 0.095 0.905 53 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -12.987 -24.672 -3.943 28.159 hybrid contribution 0.798 1.731 0.054 1.907 sum -12.189 -22.941 -3.889 26.268 Atomic orbital electron populations 1.22219 0.77593 1.04606 1.02797 1.47905 1.08189 1.05031 1.73136 1.21383 0.96847 0.84500 0.96732 1.22429 0.94855 0.84237 0.94947 0.93231 1.23329 0.98390 0.95579 0.99420 1.21896 0.95771 0.90042 0.89445 1.45951 1.51265 1.09357 1.28847 1.19326 1.28421 0.86232 1.01254 0.89238 1.25722 1.01089 1.01111 0.98422 1.70056 1.39462 1.28645 1.22396 0.85044 0.76626 0.79094 0.78385 1.21006 1.22402 1.18993 1.21297 0.87801 0.86096 0.74598 1.90622 1.16019 1.87555 1.50886 1.21345 0.97631 0.90254 1.01494 1.21327 0.96408 1.00570 0.91904 1.21540 0.96851 0.92040 1.03365 1.21091 0.95911 0.99262 0.94045 1.21521 0.98416 0.95722 0.98397 1.21023 0.96381 0.95925 0.97110 1.21546 0.97581 0.97198 0.98528 1.21718 0.97700 1.01699 0.94632 1.20791 0.95478 0.94209 0.97718 1.21546 0.98514 0.95294 0.98597 0.91568 0.87901 0.90717 0.92373 0.91074 0.91156 0.91653 0.95413 0.96374 0.94366 0.86711 0.88699 0.89920 0.90566 0.89407 0.92054 0.91305 0.92723 0.90889 0.94945 0.92750 0.92594 0.92728 0.90455 0.91645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.25 8.84 127.77 1.13 2.38 16 2 N -0.61 -16.93 2.87 -846.77 -2.43 -19.36 16 3 C 0.13 4.79 5.46 86.38 0.47 5.27 16 4 C 0.14 6.00 4.31 41.79 0.18 6.18 16 5 H 0.05 2.02 8.14 -2.39 -0.02 2.01 16 6 C -0.13 -5.56 8.02 30.93 0.25 -5.32 16 7 C 0.15 8.02 7.25 83.18 0.60 8.62 16 8 N -0.63 -33.54 3.64 -713.90 -2.60 -36.14 16 9 C -0.22 -12.79 10.55 84.03 0.89 -11.90 16 10 H 0.09 4.77 7.83 -2.91 -0.02 4.75 16 11 C -0.07 -4.14 5.50 84.86 0.47 -3.67 16 12 N -0.96 -60.13 11.69 21.65 0.25 -59.88 16 13 Si 0.98 46.60 29.55 68.60 2.03 48.63 16 14 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 15 H -0.30 -14.34 7.11 99.48 0.71 -13.64 16 16 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 17 C 0.51 14.69 5.56 87.66 0.49 15.18 16 18 O -0.57 -21.48 13.16 -3.02 -0.04 -21.52 16 19 C -0.09 -1.67 1.47 -11.54 -0.02 -1.69 16 20 C -0.08 -1.32 2.34 -10.79 -0.03 -1.35 16 21 C -0.10 -1.06 5.19 30.59 0.16 -0.90 16 22 C -0.08 -0.99 3.19 -10.79 -0.03 -1.02 16 23 C -0.10 -1.51 5.19 30.59 0.16 -1.35 16 24 C -0.09 -1.77 3.19 -10.80 -0.03 -1.81 16 25 C -0.11 -2.31 4.97 30.59 0.15 -2.15 16 26 C -0.12 -2.94 4.90 30.63 0.15 -2.79 16 27 C -0.06 -1.29 2.37 -10.76 -0.03 -1.32 16 28 C -0.10 -1.40 5.20 30.60 0.16 -1.24 16 29 H 0.07 1.11 7.12 -2.39 -0.02 1.10 16 30 H 0.10 1.19 5.81 -2.39 -0.01 1.17 16 31 H 0.07 1.30 7.98 -2.39 -0.02 1.28 16 32 H 0.06 2.49 7.00 -2.39 -0.02 2.47 16 33 H 0.07 2.58 7.99 -2.39 -0.02 2.56 16 34 H 0.07 2.71 8.14 -2.38 -0.02 2.69 16 35 H 0.06 3.03 7.93 -2.39 -0.02 3.02 16 36 H 0.03 1.60 7.44 -2.39 -0.02 1.58 16 37 H 0.02 0.96 8.14 -2.38 -0.02 0.94 16 38 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 39 H 0.12 1.68 7.41 -2.39 -0.02 1.66 16 40 H 0.10 1.32 4.58 -2.39 -0.01 1.31 16 41 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 46 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 47 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 48 H 0.03 0.89 7.21 -2.39 -0.02 0.88 16 49 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 50 H 0.06 1.83 5.51 -2.39 -0.01 1.82 16 51 H 0.05 1.31 8.10 -2.39 -0.02 1.29 16 52 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 53 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -73.45 381.81 3.20 -70.25 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: 0.87 Total: 16.92 kcal Atomic # 6 Polarization: -4.02 SS G_CDS: 5.12 Total: 1.10 kcal Atomic # 7 Polarization: -110.60 SS G_CDS: -4.78 Total: -115.38 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: -0.04 Total: -21.52 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.63 kcal Total: -73.45 3.20 -70.25 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085642680.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.320 kcal (2) G-P(sol) polarization free energy of solvation -73.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds