Wall clock time and date at job start Tue Mar 31 2020 16:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.52999 * 109.46924 * 235.17739 * 3 2 1 5 5 C 1.50704 * 109.47015 * 299.99956 * 4 3 2 6 6 O 1.21283 * 119.99960 * 240.00280 * 5 4 3 7 7 N 1.34771 * 120.00032 * 60.00210 * 5 4 3 8 8 C 1.46497 * 120.00162 * 179.97438 * 7 5 4 9 9 C 1.53001 * 109.47393 * 180.02562 * 8 7 5 10 10 C 1.53000 * 109.47345 * 180.02562 * 9 8 7 11 11 H 1.08997 * 110.64274 * 303.31438 * 10 9 8 12 12 C 1.55156 * 110.87335 * 180.02562 * 10 9 8 13 13 C 1.54908 * 101.58197 * 206.06318 * 12 10 9 14 14 N 1.47422 * 104.83357 * 37.01425 * 13 12 10 15 15 C 1.36934 * 125.65321 * 155.91756 * 14 13 12 16 16 H 1.07997 * 120.00156 * 179.97438 * 15 14 13 17 17 C 1.38816 * 119.99339 * 359.94052 * 15 14 13 18 18 N 1.31619 * 120.00310 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99553 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47173 * 90.00353 * 19 17 15 21 21 H 1.48504 * 109.47126 * 210.00364 * 19 17 15 22 22 H 1.48504 * 109.47363 * 330.00222 * 19 17 15 23 23 C 1.47031 * 108.70136 * 335.86884 * 14 13 12 24 24 C 1.52992 * 109.47326 * 59.99920 * 4 3 2 25 25 C 1.53000 * 109.47275 * 179.97438 * 24 4 3 26 26 C 1.52996 * 109.47659 * 300.00546 * 25 24 4 27 27 C 1.53002 * 109.47180 * 59.99413 * 26 25 24 28 28 C 1.53003 * 109.46728 * 180.02562 * 4 3 2 29 29 H 4.44647 * 5.63425 * 179.97438 * 4 1 2 30 30 H 1.08997 * 109.46840 * 115.17509 * 3 2 1 31 31 H 1.09000 * 109.47208 * 355.17724 * 3 2 1 32 32 H 0.97001 * 119.99904 * 0.02562 * 7 5 4 33 33 H 1.09007 * 109.46904 * 60.00482 * 8 7 5 34 34 H 1.09000 * 109.47700 * 300.00314 * 8 7 5 35 35 H 1.08998 * 109.47021 * 59.99794 * 9 8 7 36 36 H 1.09005 * 109.47177 * 300.00058 * 9 8 7 37 37 H 1.08999 * 111.00338 * 324.14259 * 12 10 9 38 38 H 1.09000 * 110.99867 * 87.94908 * 12 10 9 39 39 H 1.09000 * 110.36459 * 155.84880 * 13 12 10 40 40 H 1.09001 * 110.36573 * 278.06223 * 13 12 10 41 41 H 0.97000 * 119.99728 * 179.97438 * 18 17 15 42 42 H 1.08998 * 109.88059 * 241.64343 * 23 14 13 43 43 H 1.08994 * 109.87878 * 120.47623 * 23 14 13 44 44 H 1.09000 * 109.47545 * 299.99900 * 24 4 3 45 45 H 1.09011 * 109.47223 * 60.00340 * 24 4 3 46 46 H 1.08998 * 109.47432 * 179.97438 * 25 24 4 47 47 H 1.09000 * 109.46871 * 60.00303 * 25 24 4 48 48 H 1.09000 * 109.46781 * 299.99812 * 26 25 24 49 49 H 1.08991 * 109.47732 * 179.97438 * 26 25 24 50 50 H 1.09000 * 109.47503 * 180.02562 * 27 26 25 51 51 H 1.09000 * 109.46938 * 60.00495 * 27 26 25 52 52 H 1.08997 * 109.47185 * 299.99007 * 28 4 3 53 53 H 1.08998 * 109.47386 * 60.00193 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1556 0.8246 1.1842 5 6 2.6526 2.2402 1.0647 6 8 3.4403 3.1591 0.9872 7 7 1.3274 2.4850 1.0440 8 6 0.8384 3.8611 0.9284 9 6 -0.6916 3.8604 0.9289 10 6 -1.2023 5.2976 0.8075 11 1 -0.8022 5.9166 1.6105 12 6 -2.7534 5.3348 0.8055 13 6 -3.0321 6.6439 0.0257 14 7 -1.9903 6.6916 -1.0163 15 6 -2.0784 7.3699 -2.2026 16 1 -1.2564 7.3427 -2.9025 17 6 -3.2245 8.0921 -2.5056 18 7 -4.2263 8.1252 -1.6525 19 14 -3.3450 9.0170 -4.1241 20 1 -3.9310 8.1283 -5.1596 21 1 -4.2106 10.2108 -3.9488 22 1 -1.9891 9.4471 -4.5506 23 6 -0.8405 5.8910 -0.5704 24 6 2.6459 0.2108 2.4896 25 6 3.1560 1.0344 3.6738 26 6 4.6859 1.0347 3.6736 27 6 5.1957 1.6486 2.3681 28 6 4.6856 0.8258 1.1838 29 1 -1.0502 0.0000 -0.0003 30 1 3.0091 0.4380 -0.9300 31 1 3.0098 -1.0232 0.0864 32 1 0.6974 1.7500 1.1064 33 1 1.2016 4.2988 -0.0015 34 1 1.2014 4.4478 1.7722 35 1 -1.0544 3.4228 1.8589 36 1 -1.0550 3.2736 0.0852 37 1 -3.1642 4.4723 0.2807 38 1 -3.1440 5.3937 1.8214 39 1 -4.0222 6.6111 -0.4291 40 1 -2.9480 7.5053 0.6882 41 1 -5.0270 8.6302 -1.8642 42 1 0.0408 6.5260 -0.4807 43 1 -0.6502 5.0874 -1.2817 44 1 1.5558 0.2103 2.4897 45 1 3.0097 -0.8131 2.5761 46 1 2.7925 0.5974 4.6038 47 1 2.7925 2.0584 3.5876 48 1 5.0494 0.0107 3.7598 49 1 5.0493 1.6218 4.5170 50 1 6.2857 1.6484 2.3678 51 1 4.8322 2.6725 2.2819 52 1 5.0498 -0.1979 1.2701 53 1 5.0484 1.2634 0.2538 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267571617.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:49:41 Heat of formation + Delta-G solvation = -2.776291 kcal Electronic energy + Delta-G solvation = -29495.190664 eV Core-core repulsion = 25753.020120 eV Total energy + Delta-G solvation = -3742.170545 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 332.221 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.94899 -39.56652 -38.34393 -36.70935 -35.59228 -34.56162 -32.54152 -32.38908 -31.54992 -30.65509 -28.20406 -27.76983 -26.65112 -24.45860 -23.67917 -23.09819 -22.01148 -21.78406 -21.07660 -20.12479 -18.94487 -18.90318 -17.44453 -17.29220 -17.01809 -16.69028 -16.25473 -15.99336 -15.60539 -15.39912 -15.18535 -15.07270 -14.72343 -14.55058 -14.30042 -14.06149 -13.81128 -13.56319 -13.37719 -13.29181 -13.16580 -13.10972 -12.93506 -12.86285 -12.82788 -12.72442 -12.26557 -12.02902 -11.96022 -11.79284 -11.70698 -11.54091 -11.46153 -11.42970 -11.26079 -11.15868 -10.86861 -10.85334 -10.76175 -10.44889 -9.99309 -8.89920 -7.79395 -5.23873 1.43796 1.45991 1.54841 1.59450 1.88068 1.92505 2.23097 2.47744 3.29312 3.35209 3.60964 3.70801 3.71030 3.73628 3.82019 3.90312 4.02250 4.14285 4.22845 4.30320 4.31194 4.33848 4.43226 4.52810 4.59690 4.63020 4.66915 4.69826 4.70806 4.76239 4.82135 4.85521 4.94179 4.98973 5.05427 5.09671 5.11726 5.15710 5.17755 5.22261 5.27135 5.29297 5.36985 5.40706 5.41565 5.47605 5.48704 5.67040 5.70209 5.81782 6.30629 6.58058 6.65753 7.09978 7.30422 7.77490 8.41515 9.22330 Molecular weight = 332.22amu Principal moments of inertia in cm(-1) A = 0.019545 B = 0.002374 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.272842 B =11789.495557 C =11815.803332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.209 4.209 3 C -0.005 4.005 4 C -0.064 4.064 5 C 0.514 3.486 6 O -0.576 6.576 7 N -0.721 5.721 8 C 0.121 3.879 9 C -0.099 4.099 10 C -0.083 4.083 11 H 0.077 0.923 12 C -0.121 4.121 13 C 0.150 3.850 14 N -0.628 5.628 15 C -0.242 4.242 16 H 0.075 0.925 17 C -0.067 4.067 18 N -0.948 5.948 19 Si 0.980 3.020 20 H -0.282 1.282 21 H -0.291 1.291 22 H -0.274 1.274 23 C 0.136 3.864 24 C -0.102 4.102 25 C -0.124 4.124 26 C -0.114 4.114 27 C -0.136 4.136 28 C -0.091 4.091 29 H 0.240 0.760 30 H 0.086 0.914 31 H 0.130 0.870 32 H 0.409 0.591 33 H 0.045 0.955 34 H 0.058 0.942 35 H 0.095 0.905 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.087 0.913 39 H 0.073 0.927 40 H -0.017 1.017 41 H 0.248 0.752 42 H 0.008 0.992 43 H 0.023 0.977 44 H 0.067 0.933 45 H 0.102 0.898 46 H 0.080 0.920 47 H 0.033 0.967 48 H 0.082 0.918 49 H 0.057 0.943 50 H 0.065 0.935 51 H 0.056 0.944 52 H 0.100 0.900 53 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.249 -24.368 11.446 30.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.209 4.209 3 C -0.041 4.041 4 C -0.067 4.067 5 C 0.302 3.698 6 O -0.456 6.456 7 N -0.376 5.376 8 C -0.003 4.003 9 C -0.137 4.137 10 C -0.103 4.103 11 H 0.095 0.905 12 C -0.159 4.159 13 C 0.025 3.975 14 N -0.355 5.355 15 C -0.371 4.371 16 H 0.093 0.907 17 C -0.259 4.259 18 N -0.598 5.598 19 Si 0.808 3.192 20 H -0.209 1.209 21 H -0.217 1.217 22 H -0.199 1.199 23 C 0.011 3.989 24 C -0.140 4.140 25 C -0.162 4.162 26 C -0.152 4.152 27 C -0.174 4.174 28 C -0.129 4.129 29 H 0.256 0.744 30 H 0.104 0.896 31 H 0.148 0.852 32 H 0.251 0.749 33 H 0.063 0.937 34 H 0.076 0.924 35 H 0.113 0.887 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.105 0.895 39 H 0.091 0.909 40 H 0.001 0.999 41 H 0.058 0.942 42 H 0.026 0.974 43 H 0.041 0.959 44 H 0.086 0.914 45 H 0.121 0.879 46 H 0.099 0.901 47 H 0.052 0.948 48 H 0.100 0.900 49 H 0.075 0.925 50 H 0.084 0.916 51 H 0.074 0.926 52 H 0.119 0.881 53 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 14.674 -23.578 11.280 29.975 hybrid contribution -0.694 1.210 -1.048 1.745 sum 13.980 -22.368 10.232 28.293 Atomic orbital electron populations 1.25656 0.96846 0.99839 0.99284 1.23263 0.95054 1.01024 1.01605 1.18907 0.84776 1.02832 0.97595 1.20916 0.98034 0.90113 0.97640 1.21115 0.82015 0.92034 0.74654 1.90625 1.56023 1.47884 1.51023 1.46487 1.07591 1.09523 1.74031 1.21261 0.94792 0.83430 1.00861 1.21606 0.92642 0.95603 1.03799 1.21999 0.96191 0.96203 0.95907 0.90457 1.22876 0.94578 0.98005 1.00433 1.21759 0.94721 0.92653 0.88387 1.44864 1.15396 1.57429 1.17766 1.19441 1.00610 1.22866 0.94220 0.90714 1.25639 0.96333 1.01892 1.02082 1.70059 1.06704 1.46440 1.36594 0.85050 0.77513 0.77649 0.78951 1.20876 1.21732 1.19869 1.21526 0.89599 0.92981 0.94804 1.21654 1.00663 1.00632 0.91002 1.21582 0.96535 0.99126 0.98941 1.21522 0.94942 1.01804 0.96922 1.21748 1.00412 1.00433 0.94788 1.21387 0.90777 1.01872 0.98845 0.74352 0.89576 0.85185 0.74940 0.93686 0.92378 0.88671 0.90906 0.91277 0.89476 0.90948 0.99911 0.94248 0.97368 0.95874 0.91429 0.87915 0.90125 0.94786 0.89951 0.92470 0.91597 0.92560 0.88120 0.92511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.79 17.63 74.32 1.31 -1.48 16 2 C -0.21 -3.21 9.76 31.13 0.30 -2.91 16 3 C 0.00 -0.06 4.78 28.79 0.14 0.08 16 4 C -0.06 -1.02 0.50 -52.93 -0.03 -1.05 16 5 C 0.51 12.75 4.93 87.66 0.43 13.18 16 6 O -0.58 -19.00 13.66 -3.04 -0.04 -19.04 16 7 N -0.72 -16.68 4.90 -463.06 -2.27 -18.95 16 8 C 0.12 3.28 5.52 86.38 0.48 3.76 16 9 C -0.10 -2.45 4.73 30.59 0.14 -2.30 16 10 C -0.08 -2.78 2.98 -9.60 -0.03 -2.81 16 11 H 0.08 2.51 8.14 -2.39 -0.02 2.50 16 12 C -0.12 -4.34 6.54 31.99 0.21 -4.13 16 13 C 0.15 7.57 5.89 86.86 0.51 8.08 16 14 N -0.63 -33.98 3.39 -691.98 -2.35 -36.33 16 15 C -0.24 -14.25 10.27 84.03 0.86 -13.39 16 16 H 0.07 4.27 7.83 -2.91 -0.02 4.25 16 17 C -0.07 -3.93 5.49 84.86 0.47 -3.46 16 18 N -0.95 -57.80 10.09 21.65 0.22 -57.58 16 19 Si 0.98 46.99 29.55 68.60 2.03 49.02 16 20 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 21 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 22 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 23 C 0.14 5.92 5.98 86.73 0.52 6.44 16 24 C -0.10 -1.25 4.38 30.59 0.13 -1.12 16 25 C -0.12 -1.83 5.70 30.59 0.17 -1.65 16 26 C -0.11 -1.60 5.92 30.59 0.18 -1.42 16 27 C -0.14 -2.48 5.63 30.58 0.17 -2.31 16 28 C -0.09 -1.39 4.37 30.58 0.13 -1.25 16 29 H 0.24 2.09 7.80 -4.41 -0.03 2.05 16 30 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.13 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.41 7.69 4.10 -92.71 -0.38 7.31 16 33 H 0.04 1.46 7.49 -2.38 -0.02 1.44 16 34 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.07 1.80 8.06 -2.38 -0.02 1.78 16 37 H 0.07 2.37 8.05 -2.39 -0.02 2.36 16 38 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 39 H 0.07 4.14 5.87 -2.39 -0.01 4.13 16 40 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 41 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 42 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 43 H 0.02 1.00 7.76 -2.39 -0.02 0.98 16 44 H 0.07 0.84 6.67 -2.39 -0.02 0.82 16 45 H 0.10 0.76 8.14 -2.38 -0.02 0.74 16 46 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 47 H 0.03 0.69 7.22 -2.39 -0.02 0.67 16 48 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 49 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 50 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 51 H 0.06 1.47 5.51 -2.39 -0.01 1.46 16 52 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 53 H 0.06 1.03 8.10 -2.39 -0.02 1.01 16 Total: -1.00 -74.98 400.69 4.19 -70.79 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: 0.49 Total: 19.83 kcal Atomic # 6 Polarization: -13.85 SS G_CDS: 6.11 Total: -7.74 kcal Atomic # 7 Polarization: -108.45 SS G_CDS: -4.40 Total: -112.85 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: -0.04 Total: -19.04 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 2.03 Total: 49.02 kcal Total: -74.98 4.19 -70.79 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267571617.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.017 kcal (2) G-P(sol) polarization free energy of solvation -74.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds