Wall clock time and date at job start Tue Mar 31 2020 17:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53009 * 109.46957 * 2 1 4 4 C 1.52996 * 109.47424 * 240.00101 * 2 1 3 5 5 C 1.50697 * 109.47269 * 294.99798 * 4 2 1 6 6 C 1.38236 * 120.00020 * 269.73021 * 5 4 2 7 7 C 1.38234 * 119.99730 * 179.76320 * 6 5 4 8 8 C 1.38231 * 120.00407 * 0.50523 * 7 6 5 9 9 C 1.50697 * 120.00610 * 179.72195 * 8 7 6 10 10 C 1.50696 * 109.47381 * 270.02713 * 9 8 7 11 11 O 1.21286 * 119.99780 * 359.97438 * 10 9 8 12 12 N 1.34778 * 120.00184 * 179.97438 * 10 9 8 13 13 C 1.46498 * 120.00215 * 179.97438 * 12 10 9 14 14 H 1.09000 * 109.46830 * 34.99839 * 13 12 10 15 15 C 1.52993 * 109.47045 * 275.00024 * 13 12 10 16 16 C 1.52993 * 109.47320 * 154.99759 * 13 12 10 17 17 N 1.46509 * 109.47260 * 305.00140 * 16 13 12 18 18 C 1.46498 * 119.99687 * 269.99725 * 17 16 13 19 19 C 1.36930 * 119.99788 * 89.99939 * 17 16 13 20 20 H 1.08001 * 120.00128 * 20.30334 * 19 17 16 21 21 C 1.38812 * 119.99688 * 200.30609 * 19 17 16 22 22 N 1.31618 * 120.00104 * 15.01779 * 21 19 17 23 23 Si 1.86807 * 120.00147 * 195.01410 * 21 19 17 24 24 H 1.48497 * 109.46925 * 84.99951 * 23 21 19 25 25 H 1.48496 * 109.47226 * 205.00389 * 23 21 19 26 26 H 1.48496 * 109.47023 * 325.00294 * 23 21 19 27 27 C 1.38238 * 119.99957 * 359.74736 * 8 7 6 28 28 C 1.38233 * 119.99726 * 359.97438 * 27 8 7 29 29 H 1.08992 * 109.47364 * 299.99916 * 1 2 3 30 30 H 1.09002 * 109.47030 * 60.00639 * 1 2 3 31 31 H 1.08997 * 109.46653 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47155 * 119.99900 * 2 1 3 33 33 H 1.09001 * 109.47205 * 59.99830 * 3 2 1 34 34 H 1.08995 * 109.47239 * 179.97438 * 3 2 1 35 35 H 1.09001 * 109.47106 * 299.99930 * 3 2 1 36 36 H 1.09003 * 109.47037 * 54.99911 * 4 2 1 37 37 H 1.09007 * 109.47055 * 174.99503 * 4 2 1 38 38 H 1.07997 * 120.00207 * 359.97438 * 6 5 4 39 39 H 1.08007 * 119.99701 * 180.22893 * 7 6 5 40 40 H 1.09008 * 109.46440 * 30.02273 * 9 8 7 41 41 H 1.09001 * 109.47435 * 150.02323 * 9 8 7 42 42 H 0.96995 * 119.99731 * 359.97438 * 12 10 9 43 43 H 1.09000 * 109.47822 * 60.00201 * 15 13 12 44 44 H 1.09007 * 109.47420 * 180.02562 * 15 13 12 45 45 H 1.09000 * 109.47156 * 299.99616 * 15 13 12 46 46 H 1.08998 * 109.47331 * 65.00175 * 16 13 12 47 47 H 1.08997 * 109.47511 * 185.00426 * 16 13 12 48 48 H 1.09004 * 109.46569 * 95.10741 * 18 17 16 49 49 H 1.08994 * 109.47175 * 215.10007 * 18 17 16 50 50 H 1.08994 * 109.47415 * 335.10552 * 18 17 16 51 51 H 0.97008 * 120.00266 * 180.02562 * 22 21 19 52 52 H 1.07989 * 120.00367 * 179.97438 * 27 8 7 53 53 H 1.08002 * 120.00290 * 179.97438 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.6415 -2.1733 -1.1889 6 6 2.4841 -3.0974 -0.6000 7 6 2.1163 -4.4286 -0.5403 8 6 0.9106 -4.8373 -1.0788 9 6 0.5123 -6.2895 -1.0194 10 6 1.0152 -6.9991 -2.2501 11 8 1.6355 -6.3858 -3.0928 12 7 0.7756 -8.3152 -2.4143 13 6 1.2640 -9.0049 -3.6110 14 1 2.2237 -8.5820 -3.9078 15 6 0.2556 -8.8291 -4.7481 16 6 1.4352 -10.4945 -3.3069 17 7 2.3079 -10.6580 -2.1415 18 6 3.7565 -10.7792 -2.3225 19 6 1.7693 -10.6974 -0.8832 20 1 0.7246 -10.9369 -0.7501 21 6 2.5661 -10.4295 0.2215 22 7 3.7403 -9.8565 0.0625 23 14 1.9718 -10.8820 1.9337 24 1 2.3064 -12.3012 2.2148 25 1 2.6358 -10.0091 2.9349 26 1 0.5007 -10.6954 2.0125 27 6 0.0702 -3.9140 -1.6724 28 6 0.4355 -2.5819 -1.7270 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3632 -1.0277 -0.0005 32 1 1.8934 -0.5138 0.8900 33 1 1.6766 1.9564 0.8900 34 1 3.1299 1.4426 0.0005 35 1 1.6767 1.9564 -0.8900 36 1 1.6054 -0.2617 -2.1369 37 1 3.1265 -0.6442 -1.2951 38 1 3.4283 -2.7789 -0.1835 39 1 2.7730 -5.1500 -0.0769 40 1 0.9470 -6.7493 -0.1318 41 1 -0.5740 -6.3669 -0.9738 42 1 0.2799 -8.8057 -1.7402 43 1 0.1336 -7.7679 -4.9649 44 1 0.6187 -9.3427 -5.6384 45 1 -0.7041 -9.2520 -4.4513 46 1 0.4614 -10.9367 -3.0965 47 1 1.8818 -10.9921 -4.1677 48 1 4.2205 -9.7999 -2.2047 49 1 4.1598 -11.4643 -1.5768 50 1 3.9672 -11.1634 -3.3205 51 1 4.2973 -9.6696 0.8344 52 1 -0.8715 -4.2334 -2.0935 53 1 -0.2208 -1.8606 -2.1910 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268738467.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:08 Heat of formation + Delta-G solvation = -32.988172 kcal Electronic energy + Delta-G solvation = -29039.368338 eV Core-core repulsion = 25295.887707 eV Total energy + Delta-G solvation = -3743.480630 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 332.221 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.04002 -40.08480 -38.05570 -37.14237 -35.64717 -33.80353 -33.07691 -31.82899 -31.68189 -29.57339 -28.04063 -27.96455 -27.35719 -26.21428 -23.67611 -23.60351 -22.51840 -21.50876 -21.07730 -20.78124 -18.74864 -17.85982 -17.42116 -16.92057 -16.78457 -16.51295 -16.05466 -15.80437 -15.55695 -15.30750 -15.16088 -14.93930 -14.77609 -14.46036 -14.30718 -14.26242 -13.86870 -13.48771 -13.32081 -13.14910 -13.10239 -13.02693 -12.88717 -12.81243 -12.70744 -12.58674 -12.51557 -12.31592 -12.15161 -11.94276 -11.93095 -11.84730 -11.69123 -11.65692 -11.49300 -11.48548 -10.73214 -10.57938 -9.77709 -9.75015 -9.36314 -8.77511 -7.75569 -5.21118 0.42604 0.53930 1.48450 1.51954 1.58066 1.86290 2.49228 2.55324 2.95696 3.39417 3.72517 3.73943 3.87156 3.91076 4.05878 4.10243 4.11800 4.17493 4.26587 4.36272 4.40565 4.47746 4.56621 4.58157 4.64873 4.69271 4.76521 4.79032 4.84305 4.84547 4.87393 4.92482 4.97778 5.01849 5.07727 5.08879 5.16772 5.20999 5.21939 5.32330 5.35146 5.41987 5.46087 5.48580 5.54734 5.66989 5.73334 5.73843 5.75202 5.84966 6.15597 6.35295 6.85287 7.18173 7.52103 7.91471 8.37599 9.27876 Molecular weight = 332.22amu Principal moments of inertia in cm(-1) A = 0.013613 B = 0.002882 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.296139 B = 9714.180012 C =10851.358498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.089 4.089 3 C -0.144 4.144 4 C -0.072 4.072 5 C -0.084 4.084 6 C -0.127 4.127 7 C -0.126 4.126 8 C -0.076 4.076 9 C -0.098 4.098 10 C 0.514 3.486 11 O -0.593 6.593 12 N -0.689 5.689 13 C 0.122 3.878 14 H 0.034 0.966 15 C -0.145 4.145 16 C 0.141 3.859 17 N -0.611 5.611 18 C 0.179 3.821 19 C -0.244 4.244 20 H 0.083 0.917 21 C -0.049 4.049 22 N -0.935 5.935 23 Si 0.954 3.046 24 H -0.294 1.294 25 H -0.306 1.306 26 H -0.259 1.259 27 C -0.113 4.113 28 C -0.116 4.116 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.049 0.951 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.061 0.939 36 H 0.082 0.918 37 H 0.072 0.928 38 H 0.127 0.873 39 H 0.100 0.900 40 H 0.093 0.907 41 H 0.127 0.873 42 H 0.406 0.594 43 H 0.038 0.962 44 H 0.078 0.922 45 H 0.072 0.928 46 H 0.070 0.930 47 H 0.071 0.929 48 H -0.009 1.009 49 H 0.018 0.982 50 H 0.027 0.973 51 H 0.241 0.759 52 H 0.134 0.866 53 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.113 15.789 -3.006 18.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.108 4.108 3 C -0.201 4.201 4 C -0.109 4.109 5 C -0.084 4.084 6 C -0.145 4.145 7 C -0.144 4.144 8 C -0.077 4.077 9 C -0.138 4.138 10 C 0.301 3.699 11 O -0.475 6.475 12 N -0.338 5.338 13 C 0.014 3.986 14 H 0.052 0.948 15 C -0.204 4.204 16 C 0.015 3.985 17 N -0.333 5.333 18 C 0.033 3.967 19 C -0.374 4.374 20 H 0.101 0.899 21 C -0.244 4.244 22 N -0.582 5.582 23 Si 0.784 3.216 24 H -0.222 1.222 25 H -0.234 1.234 26 H -0.183 1.183 27 C -0.131 4.131 28 C -0.134 4.134 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.100 0.900 37 H 0.091 0.909 38 H 0.145 0.855 39 H 0.118 0.882 40 H 0.111 0.889 41 H 0.145 0.855 42 H 0.242 0.758 43 H 0.057 0.943 44 H 0.097 0.903 45 H 0.091 0.909 46 H 0.088 0.912 47 H 0.089 0.911 48 H 0.009 0.991 49 H 0.036 0.964 50 H 0.045 0.955 51 H 0.050 0.950 52 H 0.152 0.848 53 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -9.570 16.203 -3.490 19.139 hybrid contribution 0.497 -0.778 1.547 1.801 sum -9.073 15.425 -1.943 18.001 Atomic orbital electron populations 1.21907 0.94861 1.01741 1.02129 1.21056 0.96414 0.96351 0.96979 1.21825 1.01058 0.94916 1.02335 1.20699 1.01356 0.89610 0.99217 1.20072 0.94414 0.96341 0.97587 1.21123 1.00207 0.92503 1.00674 1.21085 0.96192 0.96600 1.00551 1.19422 0.95230 0.94080 0.98952 1.20655 1.04218 0.92393 0.96490 1.20777 0.78976 0.82600 0.87550 1.90612 1.43054 1.67326 1.46494 1.45769 1.56098 1.08306 1.23638 1.21659 0.96144 0.95522 0.85269 0.94751 1.22009 0.99420 1.01106 0.97828 1.21384 0.95419 0.91828 0.89899 1.44147 1.02440 1.84115 1.02639 1.20479 0.84060 0.97033 0.95109 1.19440 0.95826 1.39015 0.83141 0.89941 1.25611 0.97710 1.00149 1.00963 1.70295 1.13110 1.45888 1.28930 0.85466 0.78541 0.76776 0.80793 1.22173 1.23386 1.18275 1.21162 0.99988 0.93354 0.98552 1.21213 0.96652 0.95545 0.99965 0.92442 0.91831 0.93199 0.92277 0.92172 0.92569 0.91952 0.89965 0.90913 0.85478 0.88195 0.88875 0.85462 0.75773 0.94312 0.90344 0.90869 0.91172 0.91088 0.99057 0.96364 0.95453 0.94950 0.84828 0.83902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 8.76 71.98 0.63 -1.65 16 2 C -0.09 -1.45 2.91 -10.79 -0.03 -1.48 16 3 C -0.14 -1.84 9.19 71.99 0.66 -1.18 16 4 C -0.07 -1.32 4.84 29.85 0.14 -1.17 16 5 C -0.08 -2.09 4.71 -19.87 -0.09 -2.18 16 6 C -0.13 -3.72 9.70 22.27 0.22 -3.50 16 7 C -0.13 -4.36 9.70 22.27 0.22 -4.14 16 8 C -0.08 -2.51 4.37 -19.87 -0.09 -2.60 16 9 C -0.10 -3.21 5.83 29.10 0.17 -3.04 16 10 C 0.51 20.50 7.79 87.66 0.68 21.18 16 11 O -0.59 -28.00 15.70 -3.05 -0.05 -28.05 16 12 N -0.69 -25.94 4.49 -442.56 -1.99 -27.93 16 13 C 0.12 4.47 2.88 44.99 0.13 4.60 16 14 H 0.03 1.54 7.58 -2.39 -0.02 1.53 16 15 C -0.14 -4.11 9.48 71.98 0.68 -3.43 16 16 C 0.14 5.13 5.36 86.38 0.46 5.59 16 17 N -0.61 -28.47 2.82 -726.96 -2.05 -30.52 16 18 C 0.18 8.85 9.02 127.77 1.15 10.00 16 19 C -0.24 -11.99 8.02 84.03 0.67 -11.31 16 20 H 0.08 3.76 7.86 -2.91 -0.02 3.73 16 21 C -0.05 -2.59 5.06 84.86 0.43 -2.16 16 22 N -0.94 -54.24 10.67 21.65 0.23 -54.01 16 23 Si 0.95 42.79 29.58 68.60 2.03 44.82 16 24 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 25 H -0.31 -14.37 7.11 99.48 0.71 -13.67 16 26 H -0.26 -10.56 7.11 99.48 0.71 -9.86 16 27 C -0.11 -3.14 9.70 22.27 0.22 -2.92 16 28 C -0.12 -2.82 7.96 22.27 0.18 -2.65 16 29 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.05 0.89 6.26 -2.39 -0.01 0.88 16 32 H 0.06 1.09 8.14 -2.39 -0.02 1.08 16 33 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.08 1.32 8.09 -2.39 -0.02 1.30 16 37 H 0.07 1.31 8.08 -2.38 -0.02 1.29 16 38 H 0.13 3.29 8.06 -2.91 -0.02 3.27 16 39 H 0.10 3.75 8.06 -2.91 -0.02 3.73 16 40 H 0.09 3.25 8.09 -2.38 -0.02 3.23 16 41 H 0.13 3.18 8.09 -2.39 -0.02 3.16 16 42 H 0.41 14.57 7.40 -92.71 -0.69 13.88 16 43 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 45 H 0.07 1.76 8.14 -2.39 -0.02 1.75 16 46 H 0.07 2.28 8.03 -2.39 -0.02 2.26 16 47 H 0.07 2.31 7.86 -2.39 -0.02 2.29 16 48 H -0.01 -0.51 7.40 -2.39 -0.02 -0.52 16 49 H 0.02 0.95 7.21 -2.39 -0.02 0.94 16 50 H 0.03 1.15 7.83 -2.39 -0.02 1.13 16 51 H 0.24 13.96 8.31 -92.70 -0.77 13.19 16 52 H 0.13 3.14 8.06 -2.92 -0.02 3.12 16 53 H 0.14 2.65 8.04 -2.91 -0.02 2.63 16 Total: -1.00 -68.13 423.45 4.78 -63.35 By element: Atomic # 1 Polarization: 34.20 SS G_CDS: 0.17 Total: 34.37 kcal Atomic # 6 Polarization: -8.47 SS G_CDS: 6.43 Total: -2.03 kcal Atomic # 7 Polarization: -108.65 SS G_CDS: -3.80 Total: -112.46 kcal Atomic # 8 Polarization: -28.00 SS G_CDS: -0.05 Total: -28.05 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -68.13 4.78 -63.35 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268738467.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.357 kcal (2) G-P(sol) polarization free energy of solvation -68.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds