Wall clock time and date at job start Tue Mar 31 2020 17:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47112 * 107.81044 * 3 2 1 5 5 C 1.34776 * 119.99987 * 273.81253 * 4 3 2 6 6 O 1.21281 * 119.99963 * 5.06438 * 5 4 3 7 7 C 1.50699 * 119.99818 * 185.05884 * 5 4 3 8 8 H 1.08996 * 110.67428 * 51.33568 * 7 5 4 9 9 C 1.54889 * 110.75631 * 287.89401 * 7 5 4 10 10 C 1.54264 * 104.19504 * 203.74277 * 9 7 5 11 11 C 1.53872 * 106.60048 * 23.61323 * 10 9 7 12 12 C 1.54269 * 106.59721 * 359.97438 * 11 10 9 13 13 H 1.08994 * 110.59731 * 95.12680 * 12 11 10 14 14 C 1.53001 * 110.48767 * 217.71405 * 12 11 10 15 15 C 1.53000 * 109.47070 * 289.77506 * 14 12 11 16 16 C 1.46501 * 120.00062 * 93.81142 * 4 3 2 17 17 C 1.53045 * 109.45897 * 300.00250 * 16 4 3 18 18 C 1.53188 * 109.31187 * 181.38029 * 17 16 4 19 19 N 1.46926 * 108.77822 * 305.36899 * 18 17 16 20 20 C 1.36938 * 120.62552 * 233.58713 * 19 18 17 21 21 H 1.07994 * 120.00444 * 28.40914 * 20 19 18 22 22 C 1.38816 * 119.99313 * 208.41878 * 20 19 18 23 23 N 1.31610 * 120.00248 * 16.77971 * 22 20 19 24 24 Si 1.86804 * 119.99384 * 196.78094 * 22 20 19 25 25 H 1.48501 * 109.47324 * 265.01269 * 24 22 20 26 26 H 1.48510 * 109.46693 * 145.01652 * 24 22 20 27 27 H 1.48497 * 109.47303 * 25.01699 * 24 22 20 28 28 C 1.46918 * 118.73810 * 53.85702 * 19 18 17 29 29 C 1.53036 * 109.45651 * 60.06764 * 16 4 3 30 30 H 4.40638 * 5.51414 * 180.02562 * 4 1 2 31 31 H 1.09000 * 109.46908 * 347.81299 * 3 2 1 32 32 H 1.09000 * 109.47045 * 227.81120 * 3 2 1 33 33 H 1.08996 * 110.48791 * 322.42147 * 9 7 5 34 34 H 1.09007 * 110.48529 * 85.06845 * 9 7 5 35 35 H 1.09007 * 110.03499 * 264.32802 * 10 9 7 36 36 H 1.08999 * 110.07602 * 142.91763 * 10 9 7 37 37 H 1.09005 * 110.03624 * 240.71513 * 11 10 9 38 38 H 1.09000 * 110.07738 * 119.30752 * 11 10 9 39 39 H 1.08998 * 109.47194 * 49.77404 * 14 12 11 40 40 H 1.08999 * 109.47584 * 169.77672 * 14 12 11 41 41 H 1.09003 * 109.47091 * 60.00070 * 15 14 12 42 42 H 1.08995 * 109.47817 * 179.97438 * 15 14 12 43 43 H 1.09006 * 109.47280 * 300.00226 * 15 14 12 44 44 H 1.08994 * 109.45189 * 180.02562 * 16 4 3 45 45 H 1.09005 * 109.49465 * 61.43119 * 17 16 4 46 46 H 1.09000 * 109.52534 * 301.35374 * 17 16 4 47 47 H 1.08995 * 109.58665 * 185.57565 * 18 17 16 48 48 H 1.09008 * 109.70330 * 65.22439 * 18 17 16 49 49 H 0.97005 * 120.00307 * 179.97438 * 23 22 20 50 50 H 1.08997 * 109.59301 * 65.93278 * 28 19 18 51 51 H 1.09005 * 109.58396 * 186.35298 * 28 19 18 52 52 H 1.09004 * 109.50229 * 298.56603 * 29 16 4 53 53 H 1.08995 * 109.50133 * 58.66385 * 29 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1342 0.4234 -1.3150 5 6 3.2860 -0.4831 -2.3008 6 8 2.9327 -1.6306 -2.1291 7 6 3.8948 -0.0709 -3.6162 8 1 4.8397 0.4485 -3.4570 9 6 2.9097 0.8088 -4.4253 10 6 3.3632 0.6361 -5.8896 11 6 4.1152 -0.7044 -5.9617 12 6 4.0930 -1.2992 -4.5384 13 1 3.2630 -1.9968 -4.4273 14 6 5.4202 -1.9941 -4.2277 15 6 5.5345 -3.2716 -5.0618 16 6 3.4572 1.8314 -1.5586 17 6 2.2082 2.6871 -1.3350 18 6 2.5409 4.1542 -1.6240 19 7 3.6961 4.5473 -0.8056 20 6 3.6332 5.6476 0.0072 21 1 2.6851 5.9625 0.4174 22 6 4.7882 6.3582 0.3037 23 7 5.8675 6.1966 -0.4320 24 14 4.8105 7.5440 1.7470 25 1 4.5139 8.9167 1.2645 26 1 6.1516 7.5224 2.3846 27 1 3.7840 7.1354 2.7392 28 6 4.9219 3.7409 -0.8805 29 6 4.5608 2.2752 -0.5956 30 1 -1.0500 0.0001 0.0002 31 1 3.0098 -1.0037 0.2169 32 1 3.0090 0.6910 0.7614 33 1 1.8874 0.4528 -4.2981 34 1 2.9919 1.8524 -4.1211 35 1 4.0273 1.4525 -6.1737 36 1 2.4961 0.6136 -6.5497 37 1 5.1443 -0.5386 -6.2806 38 1 3.6134 -1.3782 -6.6562 39 1 6.2461 -1.3259 -4.4715 40 1 5.4585 -2.2474 -3.1682 41 1 5.4963 -3.0184 -6.1213 42 1 6.4801 -3.7666 -4.8409 43 1 4.7086 -3.9399 -4.8180 44 1 3.8014 1.9524 -2.5856 45 1 1.8781 2.5857 -0.3011 46 1 1.4146 2.3553 -2.0045 47 1 1.6846 4.7796 -1.3716 48 1 2.7831 4.2751 -2.6799 49 1 6.6745 6.6935 -0.2250 50 1 5.3553 3.8263 -1.8770 51 1 5.6372 4.0936 -0.1374 52 1 4.2085 2.1777 0.4313 53 1 5.4420 1.6500 -0.7392 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270338546.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:40 Heat of formation + Delta-G solvation = 8.518243 kcal Electronic energy + Delta-G solvation = -30587.403067 eV Core-core repulsion = 26845.722290 eV Total energy + Delta-G solvation = -3741.680777 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 332.221 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.74601 -39.47126 -38.56715 -36.77631 -34.61635 -34.11797 -33.57072 -31.71478 -31.24484 -30.71560 -28.51427 -27.97496 -26.87083 -24.10980 -23.86803 -23.57886 -22.28370 -21.06838 -20.74180 -20.06270 -19.10808 -18.55816 -18.36178 -17.21547 -16.76124 -16.37438 -16.13291 -15.87675 -15.59103 -15.34988 -15.08259 -14.80785 -14.77237 -14.45198 -14.35001 -14.20402 -14.03099 -13.91889 -13.72444 -13.21872 -13.02563 -12.94390 -12.75038 -12.60868 -12.56086 -12.21668 -12.11193 -12.07728 -11.91100 -11.89691 -11.64475 -11.57884 -11.49173 -11.46293 -11.37133 -11.31081 -11.13688 -11.06156 -10.65075 -10.52847 -9.80475 -8.66191 -7.86022 -5.30018 1.41614 1.47690 1.50514 1.58995 1.59332 1.90487 2.38849 2.53007 3.29446 3.37797 3.50202 3.57311 3.65793 3.70043 3.78945 4.01046 4.06536 4.21447 4.30415 4.32036 4.36287 4.45370 4.47179 4.47965 4.50935 4.57000 4.65301 4.70065 4.72190 4.81026 4.81246 4.90895 4.94908 5.01789 5.03556 5.05917 5.09267 5.14749 5.15507 5.20680 5.25831 5.29690 5.33824 5.39584 5.43044 5.47542 5.56805 5.59518 5.67800 5.77156 6.35841 6.42276 6.67126 7.11788 7.18021 7.88350 8.38951 9.20352 Molecular weight = 332.22amu Principal moments of inertia in cm(-1) A = 0.013508 B = 0.003542 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.398762 B = 7902.308265 C = 8815.847824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.227 4.227 3 C 0.220 3.780 4 N -0.598 5.598 5 C 0.524 3.476 6 O -0.571 6.571 7 C -0.112 4.112 8 H 0.108 0.892 9 C -0.113 4.113 10 C -0.119 4.119 11 C -0.114 4.114 12 C -0.069 4.069 13 H 0.066 0.934 14 C -0.115 4.115 15 C -0.146 4.146 16 C 0.149 3.851 17 C -0.121 4.121 18 C 0.147 3.853 19 N -0.608 5.608 20 C -0.261 4.261 21 H 0.063 0.937 22 C -0.044 4.044 23 N -0.930 5.930 24 Si 0.960 3.040 25 H -0.288 1.288 26 H -0.292 1.292 27 H -0.273 1.273 28 C 0.182 3.818 29 C -0.137 4.137 30 H 0.245 0.755 31 H 0.097 0.903 32 H 0.107 0.893 33 H 0.059 0.941 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.042 0.958 41 H 0.066 0.934 42 H 0.058 0.942 43 H 0.045 0.955 44 H 0.105 0.895 45 H 0.053 0.947 46 H 0.068 0.932 47 H 0.053 0.947 48 H 0.025 0.975 49 H 0.250 0.750 50 H 0.008 0.992 51 H 0.057 0.943 52 H 0.056 0.944 53 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.199 -14.761 -8.870 17.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.229 4.229 3 C 0.098 3.902 4 N -0.328 5.328 5 C 0.314 3.686 6 O -0.451 6.451 7 C -0.133 4.133 8 H 0.126 0.874 9 C -0.151 4.151 10 C -0.157 4.157 11 C -0.151 4.151 12 C -0.088 4.088 13 H 0.084 0.916 14 C -0.152 4.152 15 C -0.203 4.203 16 C 0.047 3.953 17 C -0.161 4.161 18 C 0.021 3.979 19 N -0.332 5.332 20 C -0.392 4.392 21 H 0.081 0.919 22 C -0.240 4.240 23 N -0.576 5.576 24 Si 0.788 3.212 25 H -0.215 1.215 26 H -0.219 1.219 27 H -0.198 1.198 28 C 0.056 3.944 29 C -0.177 4.177 30 H 0.261 0.739 31 H 0.115 0.885 32 H 0.125 0.875 33 H 0.078 0.922 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.060 0.940 41 H 0.085 0.915 42 H 0.077 0.923 43 H 0.064 0.936 44 H 0.123 0.877 45 H 0.072 0.928 46 H 0.086 0.914 47 H 0.072 0.928 48 H 0.043 0.957 49 H 0.059 0.941 50 H 0.026 0.974 51 H 0.075 0.925 52 H 0.074 0.926 53 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.215 -15.284 -8.764 18.115 hybrid contribution -0.038 0.938 1.155 1.489 sum -4.253 -14.346 -7.608 16.787 Atomic orbital electron populations 1.25653 0.96737 1.00313 0.97959 1.23847 0.95575 1.01095 1.02343 1.18263 0.84015 1.02081 0.85866 1.48237 1.64351 1.08741 1.11466 1.21041 0.77230 0.84443 0.85906 1.90637 1.51730 1.20641 1.82074 1.22438 1.00431 0.99383 0.91050 0.87433 1.22421 0.97767 0.99126 0.95763 1.22115 1.00705 0.98007 0.94860 1.22212 1.01438 0.96181 0.95274 1.21833 0.98303 0.94565 0.94073 0.91551 1.21531 0.96511 0.97746 0.99429 1.21718 1.01438 0.96747 1.00392 1.21286 0.95127 0.78102 1.00811 1.22162 0.96662 0.95777 1.01482 1.20975 0.90252 0.93185 0.93518 1.44311 1.11378 1.28751 1.48732 1.19439 0.94391 1.04036 1.21301 0.91948 1.25678 0.97233 0.99787 1.01290 1.70138 1.03138 1.45055 1.39246 0.85384 0.76748 0.78990 0.80048 1.21454 1.21885 1.19771 1.20632 0.88538 0.86933 0.98314 1.22487 0.97959 0.98087 0.99166 0.73853 0.88517 0.87471 0.92212 0.90589 0.90662 0.90678 0.90401 0.90808 0.91021 0.93954 0.91488 0.92296 0.93617 0.87749 0.92822 0.91384 0.92820 0.95748 0.94082 0.97385 0.92466 0.92578 0.91132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.75 19.25 74.32 1.43 -3.32 16 2 C -0.23 -6.59 12.42 31.12 0.39 -6.20 16 3 C 0.22 6.20 5.15 84.57 0.44 6.63 16 4 N -0.60 -17.07 2.36 -808.16 -1.91 -18.98 16 5 C 0.52 15.34 6.96 87.66 0.61 15.95 16 6 O -0.57 -19.99 15.38 -3.03 -0.05 -20.04 16 7 C -0.11 -2.64 1.68 -10.26 -0.02 -2.66 16 8 H 0.11 2.45 7.52 -2.39 -0.02 2.43 16 9 C -0.11 -2.42 5.65 31.67 0.18 -2.24 16 10 C -0.12 -2.03 6.80 31.32 0.21 -1.82 16 11 C -0.11 -1.87 5.69 31.32 0.18 -1.69 16 12 C -0.07 -1.47 1.99 -9.73 -0.02 -1.49 16 13 H 0.07 1.71 7.35 -2.39 -0.02 1.69 16 14 C -0.11 -2.31 5.32 30.59 0.16 -2.15 16 15 C -0.15 -2.48 9.79 71.98 0.70 -1.77 16 16 C 0.15 4.43 2.02 45.02 0.09 4.53 16 17 C -0.12 -3.84 4.82 30.67 0.15 -3.69 16 18 C 0.15 5.62 6.51 86.36 0.56 6.18 16 19 N -0.61 -28.54 2.99 -698.27 -2.09 -30.63 16 20 C -0.26 -13.79 9.58 84.03 0.81 -12.98 16 21 H 0.06 3.25 7.88 -2.91 -0.02 3.23 16 22 C -0.04 -2.37 4.92 84.86 0.42 -1.95 16 23 N -0.93 -52.55 11.18 21.65 0.24 -52.30 16 24 Si 0.96 43.58 29.59 68.60 2.03 45.61 16 25 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 26 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 27 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 28 C 0.18 8.05 5.33 86.51 0.46 8.51 16 29 C -0.14 -4.66 5.34 30.82 0.16 -4.50 16 30 H 0.25 4.10 7.80 -4.42 -0.03 4.06 16 31 H 0.10 2.71 7.62 -2.39 -0.02 2.69 16 32 H 0.11 2.90 6.46 -2.39 -0.02 2.89 16 33 H 0.06 1.39 8.04 -2.39 -0.02 1.37 16 34 H 0.08 1.69 6.38 -2.38 -0.02 1.67 16 35 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 36 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.08 1.13 7.71 -2.38 -0.02 1.11 16 38 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.07 1.29 7.95 -2.39 -0.02 1.27 16 40 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.07 0.96 7.62 -2.39 -0.02 0.94 16 42 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.04 0.85 8.14 -2.38 -0.02 0.83 16 44 H 0.10 2.95 4.05 -2.39 -0.01 2.94 16 45 H 0.05 1.84 7.21 -2.38 -0.02 1.82 16 46 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 47 H 0.05 2.06 7.93 -2.39 -0.02 2.04 16 48 H 0.02 0.92 8.14 -2.38 -0.02 0.90 16 49 H 0.25 13.75 8.31 -92.70 -0.77 12.98 16 50 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 51 H 0.06 2.93 6.05 -2.38 -0.01 2.92 16 52 H 0.06 1.97 6.72 -2.39 -0.02 1.95 16 53 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -63.73 406.09 6.01 -57.72 By element: Atomic # 1 Polarization: 22.43 SS G_CDS: 0.86 Total: 23.29 kcal Atomic # 6 Polarization: -11.59 SS G_CDS: 6.91 Total: -4.68 kcal Atomic # 7 Polarization: -98.16 SS G_CDS: -3.75 Total: -101.91 kcal Atomic # 8 Polarization: -19.99 SS G_CDS: -0.05 Total: -20.04 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -63.73 6.01 -57.72 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270338546.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.237 kcal (2) G-P(sol) polarization free energy of solvation -63.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds