Wall clock time and date at job start Tue Mar 31 2020 16:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47194 * 1 3 3 C 1.17401 * 179.97438 * 2 1 4 4 C 1.47204 * 179.97438 * 173.74899 * 3 2 1 5 5 C 1.52993 * 109.47558 * 35.54827 * 4 3 2 6 6 C 1.53005 * 109.47413 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.46948 * 179.97438 * 6 5 4 8 8 O 1.21282 * 120.00250 * 0.02562 * 7 6 5 9 9 N 1.34779 * 119.99465 * 180.02562 * 7 6 5 10 10 C 1.46923 * 120.63326 * 0.02562 * 9 7 6 11 11 C 1.53185 * 108.77657 * 126.41528 * 10 9 7 12 12 C 1.53033 * 109.31990 * 54.63012 * 11 10 9 13 13 C 1.53039 * 109.53916 * 298.63924 * 12 11 10 14 14 H 1.09002 * 109.49737 * 301.37688 * 13 12 11 15 15 C 1.52995 * 109.49831 * 181.31265 * 13 12 11 16 16 H 1.08998 * 110.91810 * 302.44549 * 15 13 12 17 17 C 1.55158 * 111.00553 * 66.35054 * 15 13 12 18 18 C 1.54339 * 103.02072 * 153.38102 * 17 15 13 19 19 N 1.47021 * 107.26633 * 338.13723 * 18 17 15 20 20 C 1.36931 * 125.64962 * 178.85047 * 19 18 17 21 21 H 1.08002 * 120.00438 * 179.69777 * 20 19 18 22 22 C 1.38817 * 119.99680 * 359.41735 * 20 19 18 23 23 N 1.31614 * 119.99888 * 0.27479 * 22 20 19 24 24 Si 1.86803 * 119.99862 * 180.27671 * 22 20 19 25 25 H 1.48508 * 109.46872 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47141 * 119.99997 * 24 22 20 27 27 H 1.48498 * 109.47018 * 240.00044 * 24 22 20 28 28 C 1.47426 * 108.70417 * 358.58904 * 19 18 17 29 29 C 1.46927 * 120.62644 * 180.02562 * 9 7 6 30 30 H 1.09005 * 109.47206 * 330.70811 * 1 2 3 31 31 H 1.09002 * 109.47458 * 90.70144 * 1 2 3 32 32 H 1.09002 * 109.47430 * 210.70274 * 1 2 3 33 33 H 1.08997 * 109.47075 * 275.54269 * 4 3 2 34 34 H 1.09002 * 109.46585 * 155.54631 * 4 3 2 35 35 H 1.09004 * 109.47192 * 59.99352 * 5 4 3 36 36 H 1.09002 * 109.46974 * 300.00098 * 5 4 3 37 37 H 1.08999 * 109.46589 * 60.00395 * 6 5 4 38 38 H 1.09002 * 109.46959 * 299.99944 * 6 5 4 39 39 H 1.08995 * 109.58553 * 6.61840 * 10 9 7 40 40 H 1.09001 * 109.70008 * 246.27151 * 10 9 7 41 41 H 1.09003 * 109.49440 * 294.67717 * 11 10 9 42 42 H 1.09004 * 109.49481 * 174.59005 * 11 10 9 43 43 H 1.09003 * 109.46431 * 178.61389 * 12 11 10 44 44 H 1.09006 * 109.44660 * 58.64627 * 12 11 10 45 45 H 1.09000 * 110.71528 * 271.93993 * 17 15 13 46 46 H 1.08994 * 110.71626 * 35.03308 * 17 15 13 47 47 H 1.09000 * 109.98868 * 218.66271 * 18 17 15 48 48 H 1.09001 * 109.77953 * 97.49455 * 18 17 15 49 49 H 0.97005 * 119.99715 * 179.97438 * 23 22 20 50 50 H 1.09003 * 110.37118 * 143.18886 * 28 19 18 51 51 H 1.08998 * 110.36604 * 265.40925 * 28 19 18 52 52 H 1.09008 * 109.58588 * 113.80385 * 29 9 7 53 53 H 1.08998 * 109.59152 * 353.38068 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4719 0.0000 0.0000 3 6 2.6459 0.0005 0.0000 4 6 4.1180 0.0018 -0.0001 5 6 4.6291 -1.1713 -0.8387 6 6 6.1591 -1.1695 -0.8393 7 6 6.6624 -2.3254 -1.6648 8 8 5.8750 -3.0764 -2.2004 9 7 7.9877 -2.5246 -1.8079 10 6 8.9539 -1.6238 -1.1648 11 6 9.9273 -2.4604 -0.3287 12 6 10.5626 -3.5340 -1.2152 13 6 9.4723 -4.4606 -1.7580 14 1 8.9370 -4.9188 -0.9264 15 6 10.1117 -5.5529 -2.6175 16 1 10.6889 -5.1180 -3.4335 17 6 10.9917 -6.4957 -1.7548 18 6 10.9651 -7.8191 -2.5485 19 7 9.7705 -7.7904 -3.4050 20 6 9.3949 -8.7709 -4.2839 21 1 8.4929 -8.6570 -4.8669 22 6 10.1765 -9.9088 -4.4298 23 7 11.2758 -10.0475 -3.7194 24 14 9.6682 -11.2429 -5.6344 25 1 8.4029 -10.8488 -6.3045 26 1 10.7336 -11.4219 -6.6533 27 1 9.4637 -12.5188 -4.9026 28 6 9.0406 -6.5339 -3.1563 29 6 8.4937 -3.6468 -2.6101 30 1 -0.3634 0.8963 0.5028 31 1 -0.3634 -0.0126 -1.0276 32 1 -0.3634 -0.8836 0.5247 33 1 4.4814 -0.0971 1.0227 34 1 4.4804 0.9377 -0.4255 35 1 4.2655 -1.0723 -1.8615 36 1 4.2666 -2.1071 -0.4133 37 1 6.5229 -1.2684 0.1835 38 1 6.5212 -0.2336 -1.2649 39 1 8.4257 -0.9230 -0.5183 40 1 9.5062 -1.0731 -1.9263 41 1 9.3874 -2.9370 0.4895 42 1 10.7067 -1.8150 0.0763 43 1 11.2741 -4.1151 -0.6285 44 1 11.0814 -3.0575 -2.0470 45 1 12.0083 -6.1102 -1.6770 46 1 10.5555 -6.6318 -0.7652 47 1 10.9091 -8.6641 -1.8623 48 1 11.8610 -7.8978 -3.1644 49 1 11.8218 -10.8428 -3.8211 50 1 8.6111 -6.1546 -4.0835 51 1 8.2588 -6.6901 -2.4129 52 1 9.0082 -3.2633 -3.4912 53 1 7.6619 -4.2808 -2.9171 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281976076.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:59:42 Heat of formation + Delta-G solvation = -11.017709 kcal Electronic energy + Delta-G solvation = -28348.316445 eV Core-core repulsion = 24605.788526 eV Total energy + Delta-G solvation = -3742.527919 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 332.221 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.34149 -39.72953 -38.04449 -36.60835 -35.22492 -34.22428 -33.56092 -32.44793 -31.07102 -30.38912 -28.67909 -27.71915 -26.47742 -25.93801 -23.96990 -23.13285 -21.87553 -21.67738 -20.83532 -19.81988 -18.87397 -18.24081 -17.41533 -17.03974 -16.81550 -16.65712 -16.30701 -15.73433 -15.55078 -15.37192 -15.06987 -14.73447 -14.65767 -14.49340 -14.28907 -14.08595 -13.98810 -13.90863 -13.80818 -13.57494 -13.40634 -13.17180 -13.14058 -12.90146 -12.78957 -12.45620 -12.21810 -12.08662 -12.02941 -11.86066 -11.82288 -11.79838 -11.66892 -11.44580 -11.36813 -11.04301 -10.77525 -10.74462 -10.60709 -10.57020 -9.56551 -8.92365 -7.88266 -5.23794 1.41614 1.43132 1.53856 1.67635 1.71342 1.78332 2.08802 2.46322 3.28868 3.37736 3.55884 3.61616 3.70755 3.85969 3.97531 4.07398 4.08110 4.16164 4.20707 4.26886 4.33304 4.46037 4.49264 4.57249 4.63782 4.65055 4.68309 4.73768 4.74925 4.80159 4.83896 4.84795 4.86820 4.88101 4.92850 4.96957 4.99152 5.09000 5.14444 5.18397 5.20679 5.23061 5.33645 5.38673 5.41398 5.43992 5.57512 5.61592 5.67467 5.76695 6.17835 6.50365 6.73557 7.08312 7.24119 7.75318 8.40181 9.22159 Molecular weight = 332.22amu Principal moments of inertia in cm(-1) A = 0.013403 B = 0.002179 C = 0.001918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.577331 B =12844.496046 C =14595.564406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 C -0.222 4.222 3 C -0.215 4.215 4 C 0.000 4.000 5 C -0.096 4.096 6 C -0.126 4.126 7 C 0.499 3.501 8 O -0.599 6.599 9 N -0.610 5.610 10 C 0.099 3.901 11 C -0.130 4.130 12 C -0.113 4.113 13 C -0.073 4.073 14 H 0.057 0.943 15 C -0.076 4.076 16 H 0.079 0.921 17 C -0.118 4.118 18 C 0.182 3.818 19 N -0.630 5.630 20 C -0.246 4.246 21 H 0.076 0.924 22 C -0.067 4.067 23 N -0.950 5.950 24 Si 0.980 3.020 25 H -0.269 1.269 26 H -0.287 1.287 27 H -0.290 1.290 28 C 0.137 3.863 29 C 0.117 3.883 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.108 0.892 34 H 0.110 0.890 35 H 0.049 0.951 36 H 0.045 0.955 37 H 0.127 0.873 38 H 0.131 0.869 39 H 0.118 0.882 40 H 0.086 0.914 41 H 0.061 0.939 42 H 0.105 0.895 43 H 0.070 0.930 44 H 0.073 0.927 45 H 0.087 0.913 46 H 0.064 0.936 47 H 0.001 0.999 48 H 0.013 0.987 49 H 0.247 0.753 50 H 0.032 0.968 51 H 0.007 0.993 52 H 0.074 0.926 53 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.628 28.992 12.042 32.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.222 4.222 3 C -0.215 4.215 4 C -0.036 4.036 5 C -0.134 4.134 6 C -0.165 4.165 7 C 0.290 3.710 8 O -0.480 6.480 9 N -0.342 5.342 10 C -0.022 4.022 11 C -0.168 4.168 12 C -0.150 4.150 13 C -0.092 4.092 14 H 0.076 0.924 15 C -0.096 4.096 16 H 0.097 0.903 17 C -0.156 4.156 18 C 0.057 3.943 19 N -0.356 5.356 20 C -0.375 4.375 21 H 0.094 0.906 22 C -0.260 4.260 23 N -0.599 5.599 24 Si 0.808 3.192 25 H -0.193 1.193 26 H -0.214 1.214 27 H -0.217 1.217 28 C 0.011 3.989 29 C -0.006 4.006 30 H 0.114 0.886 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.126 0.874 34 H 0.128 0.872 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.145 0.855 38 H 0.149 0.851 39 H 0.136 0.864 40 H 0.104 0.896 41 H 0.080 0.920 42 H 0.123 0.877 43 H 0.089 0.911 44 H 0.092 0.908 45 H 0.105 0.895 46 H 0.083 0.917 47 H 0.019 0.981 48 H 0.031 0.969 49 H 0.057 0.943 50 H 0.050 0.950 51 H 0.025 0.975 52 H 0.092 0.908 53 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.974 28.431 11.688 31.757 hybrid contribution -0.306 -1.881 -0.983 2.144 sum -8.280 26.549 10.705 29.800 Atomic orbital electron populations 1.19044 0.82903 1.04118 1.03929 1.23419 0.95514 1.01503 1.01783 1.23190 0.95076 1.01665 1.01550 1.18804 0.82914 0.99582 1.02328 1.21186 0.94290 0.97927 0.99976 1.21740 0.95792 0.97001 1.02007 1.21596 0.81667 0.86869 0.80871 1.90713 1.56346 1.49843 1.51122 1.48308 1.05943 1.29337 1.50656 1.22141 0.90826 0.91836 0.97353 1.21923 0.99327 0.97756 0.97756 1.21581 0.96655 0.96669 1.00116 1.21296 0.96415 0.94609 0.96917 0.92448 1.22195 0.95844 0.93857 0.97705 0.90266 1.22726 1.00349 0.94649 0.97855 1.20948 0.88660 0.93607 0.91072 1.44847 1.25981 1.18425 1.46322 1.19488 1.06148 0.97061 1.14779 0.90615 1.25676 0.97543 1.00685 1.02105 1.70204 1.16424 1.28678 1.44584 0.84991 0.77582 0.78597 0.78056 1.19335 1.21395 1.21725 1.21728 0.94040 0.86299 0.96789 1.21492 0.97060 0.88285 0.93769 0.88601 0.89437 0.89438 0.87403 0.87174 0.93251 0.93587 0.85520 0.85138 0.86356 0.89625 0.92031 0.87662 0.91100 0.90786 0.89488 0.91706 0.98118 0.96881 0.94332 0.94994 0.97489 0.90815 0.92494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.51 10.32 70.17 0.72 0.21 16 2 C -0.22 -4.33 14.13 31.12 0.44 -3.89 16 3 C -0.21 -4.18 13.34 31.13 0.42 -3.77 16 4 C 0.00 0.00 5.70 28.79 0.16 0.16 16 5 C -0.10 -1.64 4.46 30.59 0.14 -1.50 16 6 C -0.13 -1.52 4.05 29.85 0.12 -1.40 16 7 C 0.50 11.74 7.70 87.66 0.67 12.42 16 8 O -0.60 -21.26 15.40 -3.03 -0.05 -21.31 16 9 N -0.61 -12.35 2.97 -818.97 -2.43 -14.79 16 10 C 0.10 0.99 6.34 86.36 0.55 1.54 16 11 C -0.13 -1.43 6.08 30.67 0.19 -1.24 16 12 C -0.11 -1.96 5.03 30.62 0.15 -1.81 16 13 C -0.07 -1.87 1.84 -10.73 -0.02 -1.89 16 14 H 0.06 1.68 8.11 -2.39 -0.02 1.66 16 15 C -0.08 -2.58 2.57 -9.40 -0.02 -2.61 16 16 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 17 C -0.12 -4.31 5.57 31.79 0.18 -4.14 16 18 C 0.18 9.43 5.38 86.73 0.47 9.90 16 19 N -0.63 -34.81 3.39 -691.94 -2.35 -37.16 16 20 C -0.25 -14.79 10.28 84.04 0.86 -13.92 16 21 H 0.08 4.44 7.83 -2.91 -0.02 4.42 16 22 C -0.07 -4.03 5.49 84.86 0.47 -3.57 16 23 N -0.95 -59.44 10.31 21.65 0.22 -59.22 16 24 Si 0.98 48.09 29.55 68.60 2.03 50.12 16 25 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 26 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 27 H -0.29 -14.13 7.11 99.48 0.71 -13.43 16 28 C 0.14 6.11 5.75 86.86 0.50 6.61 16 29 C 0.12 3.10 5.41 86.35 0.47 3.57 16 30 H 0.10 0.74 8.14 -2.38 -0.02 0.72 16 31 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.05 1.07 8.10 -2.38 -0.02 1.05 16 36 H 0.05 1.03 8.10 -2.39 -0.02 1.02 16 37 H 0.13 0.78 7.69 -2.39 -0.02 0.76 16 38 H 0.13 0.68 7.95 -2.39 -0.02 0.67 16 39 H 0.12 0.39 5.93 -2.39 -0.01 0.37 16 40 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 43 H 0.07 1.26 7.45 -2.39 -0.02 1.25 16 44 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 45 H 0.09 2.71 8.11 -2.39 -0.02 2.69 16 46 H 0.06 2.25 8.01 -2.39 -0.02 2.23 16 47 H 0.00 0.03 7.53 -2.39 -0.02 0.02 16 48 H 0.01 0.74 7.36 -2.39 -0.02 0.73 16 49 H 0.25 14.91 8.31 -92.70 -0.77 14.14 16 50 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 51 H 0.01 0.34 8.04 -2.39 -0.02 0.32 16 52 H 0.07 1.82 8.14 -2.38 -0.02 1.80 16 53 H 0.06 1.97 6.42 -2.39 -0.02 1.95 16 Total: -1.00 -84.59 415.03 4.74 -79.85 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: 0.86 Total: 7.82 kcal Atomic # 6 Polarization: -11.77 SS G_CDS: 6.46 Total: -5.32 kcal Atomic # 7 Polarization: -106.61 SS G_CDS: -4.56 Total: -111.17 kcal Atomic # 8 Polarization: -21.26 SS G_CDS: -0.05 Total: -21.31 kcal Atomic # 14 Polarization: 48.09 SS G_CDS: 2.03 Total: 50.12 kcal Total: -84.59 4.74 -79.85 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281976076.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.835 kcal (2) G-P(sol) polarization free energy of solvation -84.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds