Wall clock time and date at job start Tue Mar 31 2020 17:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47207 * 252.31663 * 3 2 1 5 5 C 1.34778 * 120.00122 * 275.38875 * 4 3 2 6 6 O 1.21284 * 120.00103 * 356.02143 * 5 4 3 7 7 C 1.50699 * 119.99776 * 176.02905 * 5 4 3 8 8 C 1.54243 * 108.89520 * 292.33166 * 7 5 4 9 9 C 1.50475 * 108.52599 * 159.26970 * 8 7 5 10 10 C 1.54062 * 112.49873 * 94.14930 * 9 8 7 11 11 C 1.54067 * 112.81926 * 318.28035 * 10 9 8 12 12 C 1.50466 * 112.49500 * 318.28774 * 11 10 9 13 13 C 1.45544 * 108.89365 * 169.44889 * 7 5 4 14 14 C 1.46500 * 120.00072 * 95.38593 * 4 3 2 15 15 C 1.53044 * 109.46113 * 66.34678 * 14 4 3 16 16 C 1.53190 * 109.31326 * 178.61775 * 15 14 4 17 17 N 1.46924 * 108.89266 * 54.56339 * 16 15 14 18 18 C 1.36942 * 120.62886 * 126.46670 * 17 16 15 19 19 H 1.08007 * 119.99690 * 327.77694 * 18 17 16 20 20 C 1.38807 * 120.00201 * 147.77331 * 18 17 16 21 21 N 1.31625 * 119.99878 * 351.91786 * 20 18 17 22 22 Si 1.86801 * 120.00376 * 171.91444 * 20 18 17 23 23 H 1.48503 * 109.46581 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47185 * 120.00174 * 22 20 18 25 25 H 1.48499 * 109.47078 * 240.00528 * 22 20 18 26 26 C 1.46959 * 118.71788 * 306.64383 * 17 16 15 27 27 C 1.53044 * 109.45831 * 306.28421 * 14 4 3 28 28 H 4.40640 * 5.51383 * 179.97438 * 4 1 2 29 29 H 1.09007 * 109.46841 * 132.31873 * 3 2 1 30 30 H 1.08997 * 109.47877 * 12.32037 * 3 2 1 31 31 H 1.08998 * 108.87591 * 50.84639 * 7 5 4 32 32 H 1.09007 * 109.62893 * 278.97695 * 8 7 5 33 33 H 1.08994 * 109.63059 * 39.55573 * 8 7 5 34 34 H 1.08999 * 108.87373 * 333.36806 * 9 8 7 35 35 H 1.09003 * 108.87228 * 214.92902 * 9 8 7 36 36 H 1.09005 * 108.81283 * 197.41747 * 10 9 8 37 37 H 1.09004 * 108.72572 * 79.08848 * 10 9 8 38 38 H 1.09002 * 108.87859 * 197.50672 * 11 10 9 39 39 H 1.08999 * 108.87261 * 79.06851 * 11 10 9 40 40 H 1.09003 * 109.63402 * 334.44417 * 12 11 10 41 41 H 1.09003 * 109.63022 * 213.85741 * 12 11 10 42 42 H 1.08994 * 108.89636 * 303.44081 * 13 7 5 43 43 H 1.09003 * 108.89359 * 62.02965 * 13 7 5 44 44 H 1.08995 * 109.45162 * 186.31585 * 14 4 3 45 45 H 1.08999 * 109.49360 * 58.66342 * 15 14 4 46 46 H 1.08994 * 109.49729 * 298.56912 * 15 14 4 47 47 H 1.08997 * 109.58478 * 174.42717 * 16 15 14 48 48 H 1.08998 * 109.58371 * 294.70828 * 16 15 14 49 49 H 0.97005 * 119.99667 * 179.97438 * 21 20 18 50 50 H 1.09003 * 109.46706 * 293.56722 * 26 17 16 51 51 H 1.08999 * 109.71125 * 173.28828 * 26 17 16 52 52 H 1.09007 * 109.49432 * 301.33602 * 27 14 4 53 53 H 1.09001 * 109.49711 * 61.39948 * 27 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1342 0.4204 1.3159 5 6 3.2549 1.7317 1.6031 6 8 3.0286 2.5629 0.7493 7 6 3.6712 2.1651 2.9851 8 6 2.5451 1.8142 3.9790 9 6 3.1294 1.7626 5.3648 10 6 2.9850 3.1001 6.1156 11 6 3.2773 4.3212 5.2228 12 6 4.4674 4.1078 4.3271 13 6 3.9674 3.5899 2.9629 14 6 3.4911 -0.5851 2.3198 15 6 4.7147 -1.3706 1.8421 16 6 5.1058 -2.3975 2.9094 17 7 3.9364 -3.2316 3.2182 18 6 4.0158 -4.5971 3.1506 19 1 4.6686 -5.0649 2.4283 20 6 3.2576 -5.3799 4.0102 21 7 2.5859 -4.8175 4.9925 22 14 3.1902 -7.2315 3.7729 23 1 4.0270 -7.6118 2.6065 24 1 3.7051 -7.9058 4.9917 25 1 1.7856 -7.6490 3.5322 26 6 2.6789 -2.5722 3.5972 27 6 2.3150 -1.5433 2.5222 28 1 -1.0500 0.0001 -0.0002 29 1 3.0090 0.6928 -0.7599 30 1 3.0099 -1.0031 -0.2193 31 1 4.5724 1.6216 3.2686 32 1 1.7687 2.5782 3.9374 33 1 2.1211 0.8430 3.7241 34 1 4.1876 1.5113 5.2921 35 1 2.6219 0.9827 5.9326 36 1 3.6770 3.1068 6.9579 37 1 1.9670 3.1791 6.4972 38 1 3.4651 5.1863 5.8587 39 1 2.4025 4.5235 4.6048 40 1 5.1358 3.3725 4.7752 41 1 4.9958 5.0512 4.1893 42 1 4.7334 3.7795 2.2111 43 1 3.0632 4.1342 2.6902 44 1 3.7227 -0.0902 3.2629 45 1 5.5451 -0.6844 1.6757 46 1 4.4758 -1.8857 0.9118 47 1 5.9136 -3.0254 2.5336 48 1 5.4341 -1.8805 3.8110 49 1 2.0557 -5.3645 5.5930 50 1 2.8069 -2.0694 4.5558 51 1 1.8843 -3.3140 3.6770 52 1 1.4374 -0.9800 2.8399 53 1 2.0984 -2.0564 1.5852 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324374426.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:10 Heat of formation + Delta-G solvation = 11.077339 kcal Electronic energy + Delta-G solvation = -30952.686674 eV Core-core repulsion = 27211.116868 eV Total energy + Delta-G solvation = -3741.569806 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 332.221 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.96007 -39.50241 -38.79604 -36.82280 -34.69416 -33.84352 -33.26531 -32.92604 -31.79626 -31.15999 -28.66449 -26.99866 -25.98557 -25.45802 -23.89321 -23.74266 -22.21824 -20.92968 -20.31004 -20.13997 -19.07766 -18.61521 -18.30351 -17.25113 -16.79706 -16.54261 -16.45084 -15.71245 -15.45982 -15.31916 -15.27612 -14.95757 -14.78719 -14.42212 -14.39734 -14.18280 -14.11361 -13.95866 -13.71259 -13.20795 -13.14174 -13.01307 -12.91413 -12.67971 -12.52212 -12.25082 -12.04305 -11.97535 -11.85791 -11.75593 -11.63373 -11.55798 -11.47085 -11.41798 -11.33269 -11.19203 -11.08939 -11.06974 -10.59133 -10.51098 -9.80725 -8.58516 -7.84299 -5.35443 1.37074 1.47361 1.50074 1.58889 1.59917 1.88704 2.37258 2.52348 3.30855 3.36541 3.50098 3.63939 3.71040 3.79580 3.82482 4.06982 4.08567 4.20615 4.23800 4.29516 4.31581 4.36771 4.43560 4.45993 4.48743 4.50112 4.63943 4.70247 4.79787 4.89787 4.94797 4.95808 5.00204 5.02389 5.04150 5.10550 5.13210 5.18644 5.24497 5.32049 5.33533 5.36202 5.37593 5.39960 5.43989 5.50820 5.58040 5.62252 5.68468 5.79424 6.34706 6.45971 6.65221 7.09300 7.20131 7.88940 8.40827 9.21488 Molecular weight = 332.22amu Principal moments of inertia in cm(-1) A = 0.012413 B = 0.003909 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2255.157653 B = 7161.210506 C = 8316.518690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.229 4.229 3 C 0.220 3.780 4 N -0.597 5.597 5 C 0.516 3.484 6 O -0.576 6.576 7 C -0.092 4.092 8 C -0.105 4.105 9 C -0.117 4.117 10 C -0.114 4.114 11 C -0.118 4.118 12 C -0.109 4.109 13 C -0.099 4.099 14 C 0.149 3.851 15 C -0.132 4.132 16 C 0.146 3.854 17 N -0.609 5.609 18 C -0.260 4.260 19 H 0.065 0.935 20 C -0.044 4.044 21 N -0.933 5.933 22 Si 0.962 3.038 23 H -0.267 1.267 24 H -0.292 1.292 25 H -0.293 1.293 26 C 0.186 3.814 27 C -0.126 4.126 28 H 0.244 0.756 29 H 0.100 0.900 30 H 0.109 0.891 31 H 0.104 0.896 32 H 0.068 0.932 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.058 0.942 36 H 0.068 0.932 37 H 0.058 0.942 38 H 0.071 0.929 39 H 0.052 0.948 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.057 0.943 43 H 0.054 0.946 44 H 0.104 0.896 45 H 0.083 0.917 46 H 0.060 0.940 47 H 0.058 0.942 48 H 0.025 0.975 49 H 0.249 0.751 50 H 0.005 0.995 51 H 0.054 0.946 52 H 0.054 0.946 53 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.772 16.169 -2.204 16.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.230 4.230 3 C 0.098 3.902 4 N -0.327 5.327 5 C 0.306 3.694 6 O -0.455 6.455 7 C -0.113 4.113 8 C -0.143 4.143 9 C -0.155 4.155 10 C -0.151 4.151 11 C -0.156 4.156 12 C -0.146 4.146 13 C -0.137 4.137 14 C 0.046 3.954 15 C -0.172 4.172 16 C 0.020 3.980 17 N -0.332 5.332 18 C -0.390 4.390 19 H 0.082 0.918 20 C -0.239 4.239 21 N -0.579 5.579 22 Si 0.790 3.210 23 H -0.192 1.192 24 H -0.219 1.219 25 H -0.220 1.220 26 C 0.059 3.941 27 C -0.166 4.166 28 H 0.260 0.740 29 H 0.118 0.882 30 H 0.127 0.873 31 H 0.122 0.878 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.089 0.911 39 H 0.071 0.929 40 H 0.091 0.909 41 H 0.095 0.905 42 H 0.076 0.924 43 H 0.073 0.927 44 H 0.122 0.878 45 H 0.101 0.899 46 H 0.078 0.922 47 H 0.077 0.923 48 H 0.043 0.957 49 H 0.058 0.942 50 H 0.023 0.977 51 H 0.072 0.928 52 H 0.073 0.927 53 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.615 16.518 -2.543 16.790 hybrid contribution -0.695 -1.421 -0.058 1.583 sum 0.920 15.097 -2.601 15.347 Atomic orbital electron populations 1.25668 0.96824 1.00312 0.98079 1.23925 0.95717 1.01096 1.02243 1.18254 0.83689 1.02351 0.85868 1.48229 1.63980 1.05916 1.14551 1.21375 0.75746 0.81431 0.90864 1.90638 1.52237 1.52158 1.50493 1.20336 1.00836 0.99345 0.90797 1.21383 0.96726 1.01621 0.94596 1.21301 1.01500 0.98086 0.94594 1.21898 1.01800 0.93237 0.98176 1.21348 0.98126 0.97903 0.98209 1.21295 0.98006 1.01718 0.93611 1.20282 1.01437 0.93482 0.98535 1.21286 0.94730 0.88105 0.91232 1.22309 0.97192 0.98029 0.99658 1.21003 0.89671 0.92151 0.95208 1.44242 1.06612 1.01836 1.80525 1.19500 1.24338 0.82859 1.12324 0.91757 1.25836 1.00962 1.01662 0.95458 1.70104 1.34578 1.35209 1.18008 0.85288 0.77076 0.81176 0.77414 1.19164 1.21901 1.22023 1.20499 0.89026 0.92500 0.92038 1.22295 0.96915 0.97095 1.00278 0.74010 0.88191 0.87274 0.87800 0.91354 0.92199 0.91366 0.92368 0.91288 0.92296 0.91076 0.92913 0.90889 0.90543 0.92394 0.92706 0.87840 0.89868 0.92151 0.92298 0.95717 0.94173 0.97691 0.92763 0.92725 0.93214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.11 19.25 74.32 1.43 -3.68 16 2 C -0.23 -6.85 12.60 31.12 0.39 -6.45 16 3 C 0.22 6.18 5.06 84.57 0.43 6.61 16 4 N -0.60 -16.93 2.33 -808.15 -1.88 -18.82 16 5 C 0.52 15.06 6.78 87.66 0.59 15.66 16 6 O -0.58 -20.17 15.49 -3.04 -0.05 -20.22 16 7 C -0.09 -2.15 1.23 -13.40 -0.02 -2.17 16 8 C -0.11 -2.45 4.16 30.20 0.13 -2.33 16 9 C -0.12 -2.41 5.31 30.14 0.16 -2.25 16 10 C -0.11 -1.93 5.85 31.31 0.18 -1.74 16 11 C -0.12 -1.89 5.31 30.14 0.16 -1.73 16 12 C -0.11 -1.78 5.61 30.20 0.17 -1.61 16 13 C -0.10 -2.14 3.85 28.74 0.11 -2.03 16 14 C 0.15 4.40 1.38 45.02 0.06 4.46 16 15 C -0.13 -3.90 5.42 30.67 0.17 -3.73 16 16 C 0.15 5.38 6.51 86.36 0.56 5.94 16 17 N -0.61 -28.37 2.99 -699.03 -2.09 -30.47 16 18 C -0.26 -13.60 9.58 84.03 0.81 -12.80 16 19 H 0.06 3.30 7.84 -2.91 -0.02 3.28 16 20 C -0.04 -2.34 5.10 84.86 0.43 -1.91 16 21 N -0.93 -53.00 10.98 21.65 0.24 -52.77 16 22 Si 0.96 43.59 29.56 68.60 2.03 45.62 16 23 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 24 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 25 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 26 C 0.19 8.38 5.24 86.35 0.45 8.83 16 27 C -0.13 -4.49 4.47 30.67 0.14 -4.35 16 28 H 0.24 4.54 7.80 -4.42 -0.03 4.50 16 29 H 0.10 2.75 7.54 -2.38 -0.02 2.73 16 30 H 0.11 2.87 6.57 -2.39 -0.02 2.86 16 31 H 0.10 2.22 6.52 -2.39 -0.02 2.21 16 32 H 0.07 1.60 6.98 -2.38 -0.02 1.59 16 33 H 0.06 1.61 5.23 -2.39 -0.01 1.60 16 34 H 0.07 1.34 6.63 -2.39 -0.02 1.33 16 35 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 37 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 38 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.05 0.94 6.63 -2.39 -0.02 0.92 16 40 H 0.07 1.14 6.98 -2.39 -0.02 1.12 16 41 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.06 1.31 8.02 -2.39 -0.02 1.29 16 43 H 0.05 1.34 7.25 -2.39 -0.02 1.32 16 44 H 0.10 2.93 4.60 -2.39 -0.01 2.92 16 45 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 46 H 0.06 1.85 7.01 -2.39 -0.02 1.83 16 47 H 0.06 2.15 7.93 -2.39 -0.02 2.13 16 48 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 49 H 0.25 13.78 8.31 -92.70 -0.77 13.01 16 50 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16 51 H 0.05 2.87 6.11 -2.39 -0.01 2.85 16 52 H 0.05 1.90 7.39 -2.38 -0.02 1.89 16 53 H 0.05 1.88 7.11 -2.39 -0.02 1.86 16 Total: -1.00 -63.83 393.01 5.48 -58.35 By element: Atomic # 1 Polarization: 22.70 SS G_CDS: 0.88 Total: 23.58 kcal Atomic # 6 Polarization: -11.64 SS G_CDS: 6.36 Total: -5.28 kcal Atomic # 7 Polarization: -98.31 SS G_CDS: -3.74 Total: -102.05 kcal Atomic # 8 Polarization: -20.17 SS G_CDS: -0.05 Total: -20.22 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -63.83 5.48 -58.35 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324374426.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.426 kcal (2) G-P(sol) polarization free energy of solvation -63.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds