Wall clock time and date at job start Tue Mar 31 2020 16:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50697 * 109.47042 * 2 1 4 4 C 1.38260 * 119.99698 * 270.01742 * 3 2 1 5 5 C 1.38217 * 119.99754 * 179.97438 * 4 3 2 6 6 C 1.38255 * 119.99754 * 359.81166 * 5 4 3 7 7 C 1.38215 * 120.00408 * 0.42222 * 6 5 4 8 8 C 1.50696 * 120.00348 * 179.80675 * 7 6 5 9 9 C 1.50697 * 109.47118 * 269.73137 * 8 7 6 10 10 O 1.21279 * 120.00380 * 359.97438 * 9 8 7 11 11 N 1.34776 * 119.99939 * 180.02562 * 9 8 7 12 12 C 1.46502 * 120.00290 * 184.94762 * 11 9 8 13 13 H 1.09000 * 109.46988 * 32.43155 * 12 11 9 14 14 C 1.52999 * 109.47432 * 152.43133 * 12 11 9 15 15 N 1.46502 * 109.47249 * 305.00134 * 14 12 11 16 16 C 1.36932 * 120.00083 * 180.02562 * 15 14 12 17 17 H 1.08001 * 119.99708 * 359.97438 * 16 15 14 18 18 C 1.38812 * 119.99918 * 180.02562 * 16 15 14 19 19 N 1.31625 * 119.99888 * 179.97438 * 18 16 15 20 20 Si 1.86793 * 120.00191 * 0.02562 * 18 16 15 21 21 H 1.48492 * 109.47532 * 89.99783 * 20 18 16 22 22 H 1.48501 * 109.47346 * 210.00175 * 20 18 16 23 23 H 1.48507 * 109.47071 * 329.99966 * 20 18 16 24 24 C 1.52999 * 109.47142 * 272.43663 * 12 11 9 25 25 C 1.52998 * 109.46969 * 174.17621 * 24 12 11 26 26 C 1.52993 * 109.47440 * 294.72673 * 25 24 12 27 27 C 1.53008 * 109.46734 * 174.72840 * 25 24 12 28 28 C 1.38210 * 120.00179 * 89.99984 * 3 2 1 29 29 H 1.09007 * 109.47220 * 60.00116 * 1 2 3 30 30 H 1.08994 * 109.47172 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47420 * 300.00385 * 1 2 3 32 32 H 1.08999 * 109.46976 * 239.99847 * 2 1 3 33 33 H 1.08999 * 109.46997 * 120.00058 * 2 1 3 34 34 H 1.07997 * 120.00636 * 0.02562 * 4 3 2 35 35 H 1.07996 * 119.99779 * 180.02562 * 5 4 3 36 36 H 1.08001 * 119.99800 * 180.23309 * 6 5 4 37 37 H 1.08995 * 109.47171 * 149.73016 * 8 7 6 38 38 H 1.09006 * 109.47081 * 29.72916 * 8 7 6 39 39 H 0.97002 * 120.00251 * 4.93939 * 11 9 8 40 40 H 1.08999 * 109.46919 * 64.99920 * 14 12 11 41 41 H 1.09006 * 109.46878 * 185.00179 * 14 12 11 42 42 H 0.96998 * 119.99886 * 0.02562 * 15 14 12 43 43 H 0.97001 * 119.99948 * 179.97438 * 19 18 16 44 44 H 1.08995 * 109.47198 * 54.17475 * 24 12 11 45 45 H 1.08997 * 109.46616 * 294.17486 * 24 12 11 46 46 H 1.09005 * 109.47272 * 54.73471 * 25 24 12 47 47 H 1.09000 * 109.47222 * 56.34146 * 26 25 24 48 48 H 1.08997 * 109.47704 * 176.34122 * 26 25 24 49 49 H 1.09003 * 109.47418 * 296.34364 * 26 25 24 50 50 H 1.09006 * 109.46709 * 180.02562 * 27 25 24 51 51 H 1.08994 * 109.47232 * 299.99772 * 27 25 24 52 52 H 1.09000 * 109.47136 * 60.00466 * 27 25 24 53 53 H 1.08002 * 119.99808 * 359.97438 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2624 2.0726 -1.1974 5 6 2.7226 3.3759 -1.1974 6 6 2.9491 4.0290 -0.0001 7 6 2.7237 3.3758 1.1969 8 6 2.9748 4.0862 2.5020 9 6 4.3979 3.8491 2.9373 10 8 5.1356 3.1698 2.2552 11 7 4.8507 4.3912 4.0851 12 6 6.2616 4.2521 4.4544 13 1 6.8733 4.2353 3.5524 14 6 6.6783 5.4347 5.3312 15 7 6.3775 6.6884 4.6355 16 6 6.6660 7.8877 5.2301 17 1 7.1151 7.9093 6.2121 18 6 6.3805 9.0755 4.5711 19 7 6.6574 10.2283 5.1428 20 14 5.6020 9.0381 2.8735 21 1 4.1231 9.0458 3.0069 22 1 6.0358 10.2315 2.1035 23 1 6.0282 7.8071 2.1605 24 6 6.4597 2.9479 5.2293 25 6 7.9518 2.7305 5.4888 26 6 8.6753 2.5174 4.1577 27 6 8.1410 1.4977 6.3751 28 6 2.2627 2.0724 1.1969 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.0817 1.5638 -2.1327 35 1 2.9019 3.8852 -2.1327 36 1 3.3051 5.0487 -0.0001 37 1 2.2938 3.7023 3.2615 38 1 2.8081 5.1555 2.3716 39 1 4.2425 4.8736 4.6668 40 1 6.1292 5.4006 6.2722 41 1 7.7481 5.3785 5.5325 42 1 5.9739 6.6689 3.7537 43 1 6.4582 11.0584 4.6821 44 1 6.0674 2.1152 4.6456 45 1 5.9303 3.0063 6.1803 46 1 8.3646 3.6056 5.9908 47 1 8.4867 3.3672 3.5016 48 1 9.7467 2.4274 4.3367 49 1 8.3078 1.6059 3.6862 50 1 9.2040 1.3431 6.5604 51 1 7.6256 1.6495 7.3235 52 1 7.7282 0.6226 5.8732 53 1 2.0823 1.5634 2.1322 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482386493.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:45:53 Heat of formation + Delta-G solvation = -50.878698 kcal Electronic energy + Delta-G solvation = -28914.032007 eV Core-core repulsion = 25169.775585 eV Total energy + Delta-G solvation = -3744.256421 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 332.221 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.23812 -40.14303 -38.50749 -36.47438 -35.33528 -35.10831 -33.52690 -33.14695 -30.97841 -30.32783 -28.34989 -28.02754 -27.37496 -24.80330 -24.29290 -23.44641 -22.66404 -21.76560 -20.93592 -20.71578 -19.65651 -18.10146 -17.56592 -17.13012 -16.89815 -16.70563 -16.14503 -15.94218 -15.78311 -15.45656 -15.05556 -14.89676 -14.66890 -14.64911 -14.44194 -14.35412 -14.11839 -13.83512 -13.78436 -13.71425 -13.23420 -13.09056 -12.98223 -12.87912 -12.83802 -12.61634 -12.58813 -12.24187 -12.16173 -12.07213 -11.90128 -11.84129 -11.69872 -11.64460 -11.55754 -11.35932 -11.05354 -10.84519 -9.99009 -9.69502 -9.51363 -9.32096 -8.04462 -5.37584 0.40836 0.49506 1.33325 1.36991 1.43433 1.66084 2.23455 2.44834 2.88785 3.27349 3.51787 3.65709 3.80467 3.81544 3.97992 3.98297 4.07902 4.10671 4.16578 4.21731 4.28769 4.35246 4.38800 4.50832 4.54156 4.56983 4.58099 4.68539 4.74859 4.77919 4.80364 4.89803 4.93758 4.98153 5.01498 5.03301 5.09327 5.11719 5.13798 5.18285 5.22281 5.34365 5.39105 5.47513 5.49941 5.55801 5.60063 5.66034 5.71606 5.74925 6.12700 6.19203 6.59880 7.05216 7.28343 7.80711 7.99371 9.16948 Molecular weight = 332.22amu Principal moments of inertia in cm(-1) A = 0.008874 B = 0.003585 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3154.386149 B = 7807.805071 C =10244.046893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.083 4.083 3 C -0.089 4.089 4 C -0.128 4.128 5 C -0.124 4.124 6 C -0.135 4.135 7 C -0.071 4.071 8 C -0.103 4.103 9 C 0.513 3.487 10 O -0.572 6.572 11 N -0.716 5.716 12 C 0.142 3.858 13 H 0.067 0.933 14 C 0.149 3.851 15 N -0.755 5.755 16 C -0.229 4.229 17 H 0.062 0.938 18 C -0.059 4.059 19 N -0.981 5.981 20 Si 0.947 3.053 21 H -0.267 1.267 22 H -0.298 1.298 23 H -0.267 1.267 24 C -0.106 4.106 25 C -0.098 4.098 26 C -0.145 4.145 27 C -0.139 4.139 28 C -0.116 4.116 29 H 0.054 0.946 30 H 0.070 0.930 31 H 0.052 0.948 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.139 0.861 35 H 0.135 0.865 36 H 0.115 0.885 37 H 0.131 0.869 38 H 0.112 0.888 39 H 0.412 0.588 40 H 0.044 0.956 41 H 0.041 0.959 42 H 0.364 0.636 43 H 0.258 0.742 44 H 0.060 0.940 45 H 0.079 0.921 46 H 0.071 0.929 47 H 0.037 0.963 48 H 0.062 0.938 49 H 0.051 0.949 50 H 0.061 0.939 51 H 0.061 0.939 52 H 0.054 0.946 53 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.330 -23.286 -7.250 26.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.120 4.120 3 C -0.089 4.089 4 C -0.146 4.146 5 C -0.142 4.142 6 C -0.153 4.153 7 C -0.072 4.072 8 C -0.142 4.142 9 C 0.301 3.699 10 O -0.451 6.451 11 N -0.367 5.367 12 C 0.037 3.963 13 H 0.085 0.915 14 C 0.023 3.977 15 N -0.401 5.401 16 C -0.360 4.360 17 H 0.080 0.920 18 C -0.250 4.250 19 N -0.631 5.631 20 Si 0.775 3.225 21 H -0.193 1.193 22 H -0.225 1.225 23 H -0.193 1.193 24 C -0.145 4.145 25 C -0.117 4.117 26 C -0.202 4.202 27 C -0.196 4.196 28 C -0.134 4.134 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.071 0.929 32 H 0.098 0.902 33 H 0.091 0.909 34 H 0.157 0.843 35 H 0.153 0.847 36 H 0.133 0.867 37 H 0.149 0.851 38 H 0.130 0.870 39 H 0.248 0.752 40 H 0.062 0.938 41 H 0.059 0.941 42 H 0.197 0.803 43 H 0.067 0.933 44 H 0.079 0.921 45 H 0.097 0.903 46 H 0.089 0.911 47 H 0.056 0.944 48 H 0.081 0.919 49 H 0.070 0.930 50 H 0.080 0.920 51 H 0.081 0.919 52 H 0.073 0.927 53 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -10.724 -23.628 -7.556 27.025 hybrid contribution -0.220 1.197 -0.702 1.405 sum -10.944 -22.431 -8.259 26.289 Atomic orbital electron populations 1.21720 0.93806 1.02453 1.01988 1.20574 0.96834 0.91250 1.03384 1.20163 0.98640 0.97225 0.92884 1.21278 1.00110 0.94854 0.98355 1.21331 0.99289 0.95497 0.98117 1.21190 1.00750 1.00415 0.92957 1.19427 0.98980 0.94881 0.93869 1.20767 0.93318 1.03447 0.96704 1.20960 0.90314 0.78504 0.80171 1.90685 1.59464 1.39901 1.55081 1.46039 1.11009 1.56482 1.23182 1.21186 0.82046 0.95007 0.98050 0.91457 1.21137 0.98755 0.83303 0.94502 1.42688 1.76123 1.01854 1.19469 1.19029 1.32570 0.83946 1.00491 0.91963 1.25402 1.02774 0.94813 1.02057 1.69867 1.55682 0.97364 1.40230 0.85526 0.79297 0.76811 0.80835 1.19261 1.22499 1.19296 1.21842 0.97013 0.95457 1.00197 1.21150 0.94438 0.99603 0.96520 1.21845 1.00475 1.00969 0.96958 1.21773 1.02089 0.96582 0.99192 1.21032 1.00062 0.93798 0.98481 0.92675 0.91060 0.92929 0.90218 0.90865 0.84302 0.84662 0.86682 0.85059 0.86999 0.75215 0.93816 0.94096 0.80328 0.93332 0.92144 0.90277 0.91084 0.94383 0.91913 0.92968 0.92011 0.91948 0.92665 0.85353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.89 71.98 0.71 -1.01 16 2 C -0.08 -1.22 6.06 29.85 0.18 -1.04 16 3 C -0.09 -1.81 5.13 -19.87 -0.10 -1.91 16 4 C -0.13 -2.59 9.70 22.27 0.22 -2.37 16 5 C -0.12 -2.78 10.05 22.27 0.22 -2.56 16 6 C -0.13 -3.45 9.70 22.27 0.22 -3.23 16 7 C -0.07 -1.76 4.37 -19.87 -0.09 -1.84 16 8 C -0.10 -2.28 5.83 29.10 0.17 -2.11 16 9 C 0.51 14.86 7.80 87.66 0.68 15.55 16 10 O -0.57 -20.88 15.71 -3.02 -0.05 -20.93 16 11 N -0.72 -19.80 4.49 -442.54 -1.99 -21.79 16 12 C 0.14 4.32 2.08 44.99 0.09 4.42 16 13 H 0.07 2.42 5.68 -2.39 -0.01 2.40 16 14 C 0.15 5.34 5.49 86.38 0.47 5.81 16 15 N -0.76 -34.16 5.24 -343.44 -1.80 -35.96 16 16 C -0.23 -12.75 10.47 84.03 0.88 -11.87 16 17 H 0.06 3.76 8.06 -2.91 -0.02 3.74 16 18 C -0.06 -3.41 5.50 84.86 0.47 -2.95 16 19 N -0.98 -62.10 13.97 21.65 0.30 -61.80 16 20 Si 0.95 45.38 27.74 68.60 1.90 47.29 16 21 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 22 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 23 H -0.27 -12.20 6.52 99.48 0.65 -11.55 16 24 C -0.11 -2.63 4.45 30.59 0.14 -2.49 16 25 C -0.10 -2.29 2.80 -10.79 -0.03 -2.32 16 26 C -0.15 -3.65 9.04 71.98 0.65 -2.99 16 27 C -0.14 -2.59 9.19 71.98 0.66 -1.93 16 28 C -0.12 -2.60 9.36 22.27 0.21 -2.39 16 29 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 30 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.08 1.02 8.09 -2.39 -0.02 1.00 16 33 H 0.07 1.04 8.09 -2.39 -0.02 1.02 16 34 H 0.14 2.10 8.06 -2.91 -0.02 2.07 16 35 H 0.14 2.45 8.06 -2.91 -0.02 2.43 16 36 H 0.12 2.90 8.06 -2.91 -0.02 2.88 16 37 H 0.13 2.05 8.09 -2.39 -0.02 2.03 16 38 H 0.11 2.30 8.08 -2.38 -0.02 2.28 16 39 H 0.41 10.00 8.63 -92.71 -0.80 9.20 16 40 H 0.04 1.49 8.14 -2.39 -0.02 1.48 16 41 H 0.04 1.51 6.72 -2.38 -0.02 1.50 16 42 H 0.36 16.25 5.19 -92.71 -0.48 15.77 16 43 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 44 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 45 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 46 H 0.07 1.77 6.47 -2.38 -0.02 1.76 16 47 H 0.04 1.11 6.30 -2.39 -0.02 1.10 16 48 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 49 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 50 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 51 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 52 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 53 H 0.13 2.46 8.06 -2.91 -0.02 2.44 16 Total: -1.00 -72.05 424.31 3.67 -68.38 By element: Atomic # 1 Polarization: 42.52 SS G_CDS: -0.46 Total: 42.06 kcal Atomic # 6 Polarization: -23.01 SS G_CDS: 5.76 Total: -17.25 kcal Atomic # 7 Polarization: -116.06 SS G_CDS: -3.48 Total: -119.54 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: -0.05 Total: -20.93 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 1.90 Total: 47.29 kcal Total: -72.05 3.67 -68.38 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482386493.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.505 kcal (2) G-P(sol) polarization free energy of solvation -72.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds