Wall clock time and date at job start Tue Mar 31 2020 16:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.53004 * 109.46973 * 113.77073 * 3 2 1 5 5 C 1.52996 * 109.47196 * 179.97438 * 4 3 2 6 6 C 1.53004 * 109.47196 * 179.97438 * 5 4 3 7 7 C 1.52996 * 109.47196 * 180.02562 * 6 5 4 8 8 C 1.50695 * 109.47168 * 180.02562 * 7 6 5 9 9 O 1.21282 * 120.00428 * 359.97438 * 8 7 6 10 10 N 1.34784 * 120.00088 * 179.97438 * 8 7 6 11 11 C 1.47376 * 125.74238 * 0.03033 * 10 8 7 12 12 C 1.55442 * 106.73830 * 181.02253 * 11 10 8 13 13 H 1.09002 * 112.50168 * 213.89542 * 12 11 10 14 14 C 1.52994 * 106.45256 * 90.61517 * 12 11 10 15 15 C 1.53043 * 110.77320 * 197.70159 * 14 12 11 16 16 C 1.53312 * 108.99704 * 61.37888 * 15 14 12 17 17 C 1.52821 * 108.15568 * 296.38151 * 16 15 14 18 18 H 1.09000 * 109.04361 * 298.57903 * 17 16 15 19 19 N 1.46501 * 109.04322 * 179.70029 * 17 16 15 20 20 C 1.36936 * 119.99845 * 82.84053 * 19 17 16 21 21 H 1.08000 * 119.99918 * 0.02562 * 20 19 17 22 22 C 1.38810 * 120.00118 * 180.02562 * 20 19 17 23 23 N 1.31617 * 119.99869 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00192 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47223 * 359.97438 * 24 22 20 26 26 H 1.48504 * 109.47546 * 119.99843 * 24 22 20 27 27 H 1.48502 * 109.46991 * 239.99631 * 24 22 20 28 28 C 1.50858 * 111.66563 * 59.13799 * 17 16 15 29 29 H 1.08999 * 109.35093 * 185.13066 * 28 17 16 30 30 C 1.47932 * 125.74387 * 179.97438 * 10 8 7 31 31 H 4.44653 * 5.63291 * 180.02562 * 4 1 2 32 32 H 1.08993 * 109.47600 * 353.77215 * 3 2 1 33 33 H 1.08999 * 109.47356 * 233.76587 * 3 2 1 34 34 H 1.09005 * 109.47225 * 59.99658 * 4 3 2 35 35 H 1.08999 * 109.47297 * 300.00369 * 4 3 2 36 36 H 1.08996 * 109.47070 * 59.99791 * 5 4 3 37 37 H 1.08999 * 109.47247 * 299.99583 * 5 4 3 38 38 H 1.09005 * 109.47225 * 59.99661 * 6 5 4 39 39 H 1.08999 * 109.47197 * 299.99825 * 6 5 4 40 40 H 1.08996 * 109.47070 * 59.99791 * 7 6 5 41 41 H 1.09009 * 109.46866 * 300.00020 * 7 6 5 42 42 H 1.08994 * 110.00738 * 61.69721 * 11 10 8 43 43 H 1.09005 * 110.03911 * 300.35462 * 11 10 8 44 44 H 1.09001 * 109.16610 * 317.43374 * 14 12 11 45 45 H 1.09003 * 109.16918 * 76.63724 * 14 12 11 46 46 H 1.09008 * 109.18201 * 301.63537 * 15 14 12 47 47 H 1.09001 * 109.73261 * 181.45542 * 15 14 12 48 48 H 1.09004 * 109.72514 * 176.72012 * 16 15 14 49 49 H 1.08993 * 109.76259 * 56.06809 * 16 15 14 50 50 H 0.96998 * 120.00175 * 262.84519 * 19 17 16 51 51 H 0.96997 * 120.00231 * 180.02562 * 23 22 20 52 52 H 1.08993 * 110.57091 * 323.09518 * 30 10 8 53 53 H 1.09000 * 110.56737 * 85.96753 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1557 0.5823 -1.3202 5 6 4.6857 0.5836 -1.3200 6 6 5.1954 1.1647 -2.6404 7 6 6.7254 1.1654 -2.6404 8 6 7.2274 1.7384 -3.9407 9 8 6.4391 2.1092 -4.7846 10 7 8.5525 1.8387 -4.1659 11 6 9.6177 1.4286 -3.2337 12 6 10.9698 1.7629 -3.9238 13 1 11.7522 1.0448 -3.6784 14 6 11.3353 3.1852 -3.4945 15 6 12.3906 3.7802 -4.4298 16 6 11.8173 3.8481 -5.8500 17 6 11.5438 2.4206 -6.3220 18 1 12.4823 1.8665 -6.3414 19 7 10.9879 2.4633 -7.6768 20 6 11.8232 2.5707 -8.7565 21 1 12.8919 2.6235 -8.6094 22 6 11.2965 2.6117 -10.0402 23 7 9.9942 2.5468 -10.2195 24 14 12.4360 2.7574 -11.5131 25 1 13.8445 2.8121 -11.0458 26 1 12.2532 1.5797 -12.3990 27 1 12.1161 3.9971 -12.2656 28 6 10.5716 1.7101 -5.4132 29 1 10.4739 0.6718 -5.7300 30 6 9.1824 2.3781 -5.3910 31 1 -1.0501 0.0001 0.0003 32 1 3.0099 -1.0207 0.1115 33 1 3.0091 0.6082 0.8289 34 1 2.7919 1.6038 -1.4317 35 1 2.7926 -0.0251 -2.1491 36 1 5.0499 -0.4376 -1.2082 37 1 5.0484 1.1915 -0.4911 38 1 4.8312 2.1860 -2.7526 39 1 4.8327 0.5566 -3.4690 40 1 7.0892 0.1441 -2.5285 41 1 7.0884 1.7734 -1.8117 42 1 9.5523 0.3579 -3.0405 43 1 9.5294 1.9820 -2.2988 44 1 10.4430 3.8102 -3.5302 45 1 11.7159 3.1642 -2.4733 46 1 13.2756 3.1439 -4.4220 47 1 12.6570 4.7823 -4.0938 48 1 12.5380 4.3238 -6.5153 49 1 10.8885 4.4184 -5.8457 50 1 10.0282 2.4155 -7.8089 51 1 9.6262 2.5751 -11.1165 52 1 8.6077 2.0960 -6.2731 53 1 9.2796 3.4618 -5.3263 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486161810.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:53:55 Heat of formation + Delta-G solvation = -22.448615 kcal Electronic energy + Delta-G solvation = -28413.512052 eV Core-core repulsion = 24670.488451 eV Total energy + Delta-G solvation = -3743.023600 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 332.221 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.68805 -39.91003 -37.37125 -36.88001 -35.35337 -34.80946 -33.30591 -32.37565 -31.50758 -30.53023 -28.55106 -27.63585 -25.98607 -25.21363 -23.53481 -22.88552 -21.99832 -21.88401 -20.20644 -19.73286 -18.98408 -18.88366 -17.89829 -17.41434 -16.95996 -16.59447 -16.37902 -16.00998 -15.40679 -15.33749 -15.14013 -15.09116 -14.88014 -14.60905 -14.41795 -14.11515 -13.94715 -13.71994 -13.46550 -13.15234 -13.02967 -12.93570 -12.81842 -12.75145 -12.43746 -12.38528 -12.24663 -12.12140 -12.07365 -11.92838 -11.90562 -11.88934 -11.41064 -11.26652 -11.19197 -11.06578 -10.99309 -10.95780 -10.82409 -10.72489 -9.61075 -8.99919 -7.93973 -5.22821 1.44852 1.46012 1.56010 1.66744 1.87783 1.92616 2.02592 2.55109 3.38842 3.40656 3.50125 3.53634 3.77425 3.81278 3.97258 4.03925 4.10325 4.24209 4.27437 4.28161 4.30070 4.37576 4.44188 4.51053 4.55109 4.63158 4.67719 4.68290 4.74975 4.81666 4.83502 4.87326 4.88984 4.93795 4.94873 5.00453 5.08727 5.14951 5.20721 5.22976 5.25852 5.30635 5.31120 5.39911 5.45019 5.45811 5.52987 5.53682 5.58742 5.71697 6.27887 6.60926 6.72378 7.19983 7.32909 8.10791 8.31974 9.30023 Molecular weight = 332.22amu Principal moments of inertia in cm(-1) A = 0.015863 B = 0.002083 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.705731 B =13437.641235 C =14882.131013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.216 4.216 3 C -0.013 4.013 4 C -0.114 4.114 5 C -0.107 4.107 6 C -0.106 4.106 7 C -0.120 4.120 8 C 0.509 3.491 9 O -0.602 6.602 10 N -0.620 5.620 11 C 0.100 3.900 12 C -0.080 4.080 13 H 0.127 0.873 14 C -0.107 4.107 15 C -0.110 4.110 16 C -0.129 4.129 17 C 0.185 3.815 18 H 0.049 0.951 19 N -0.743 5.743 20 C -0.231 4.231 21 H 0.080 0.920 22 C -0.083 4.083 23 N -0.975 5.975 24 Si 0.972 3.028 25 H -0.261 1.261 26 H -0.296 1.296 27 H -0.298 1.298 28 C -0.089 4.089 29 H 0.064 0.936 30 C 0.122 3.878 31 H 0.238 0.762 32 H 0.100 0.900 33 H 0.102 0.898 34 H 0.054 0.946 35 H 0.052 0.948 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.048 0.952 39 H 0.044 0.956 40 H 0.119 0.881 41 H 0.124 0.876 42 H 0.092 0.908 43 H 0.104 0.896 44 H 0.046 0.954 45 H 0.100 0.900 46 H 0.073 0.927 47 H 0.068 0.932 48 H 0.039 0.961 49 H 0.037 0.963 50 H 0.368 0.632 51 H 0.248 0.752 52 H 0.030 0.970 53 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.418 -5.427 29.261 30.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.216 4.216 3 C -0.049 4.049 4 C -0.152 4.152 5 C -0.144 4.144 6 C -0.144 4.144 7 C -0.159 4.159 8 C 0.300 3.700 9 O -0.484 6.484 10 N -0.353 5.353 11 C -0.021 4.021 12 C -0.099 4.099 13 H 0.145 0.855 14 C -0.144 4.144 15 C -0.148 4.148 16 C -0.169 4.169 17 C 0.077 3.923 18 H 0.067 0.933 19 N -0.382 5.382 20 C -0.363 4.363 21 H 0.098 0.902 22 C -0.274 4.274 23 N -0.626 5.626 24 Si 0.802 3.198 25 H -0.185 1.185 26 H -0.223 1.223 27 H -0.225 1.225 28 C -0.109 4.109 29 H 0.082 0.918 30 C -0.001 4.001 31 H 0.255 0.745 32 H 0.118 0.882 33 H 0.120 0.880 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.102 0.898 37 H 0.105 0.895 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.137 0.863 41 H 0.142 0.858 42 H 0.110 0.890 43 H 0.122 0.878 44 H 0.065 0.935 45 H 0.119 0.881 46 H 0.091 0.909 47 H 0.087 0.913 48 H 0.058 0.942 49 H 0.056 0.944 50 H 0.200 0.800 51 H 0.057 0.943 52 H 0.048 0.952 53 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.721 -5.249 28.765 29.618 hybrid contribution -0.610 0.431 -2.283 2.402 sum -5.332 -4.817 26.481 27.439 Atomic orbital electron populations 1.25711 0.97118 1.00935 1.00467 1.23960 0.95952 1.00752 1.00914 1.18879 0.83475 1.03560 0.98985 1.21507 0.96325 1.00850 0.96529 1.21533 0.93840 1.02610 0.96393 1.21326 0.93454 1.01108 0.98487 1.21702 0.97088 1.04109 0.92994 1.21512 0.80223 0.77880 0.90398 1.90710 1.55883 1.52220 1.49568 1.48935 1.05714 1.61983 1.18669 1.22771 0.84926 1.01767 0.92647 1.22397 0.97089 0.99287 0.91118 0.85537 1.21638 0.98500 0.94187 1.00063 1.21543 0.98771 1.01389 0.93098 1.22121 0.99445 0.98128 0.97197 1.19883 0.94959 0.94278 0.83146 0.93257 1.42828 1.05809 1.88200 1.01402 1.19693 0.90731 1.39637 0.86270 0.90242 1.25588 0.97086 1.04302 1.00441 1.69860 1.11794 1.60025 1.20966 0.85081 0.78757 0.76410 0.79598 1.18527 1.22335 1.22517 1.21708 0.93181 0.99044 0.96921 0.91800 1.21912 0.93425 0.97743 0.87068 0.74543 0.88167 0.88011 0.92685 0.92892 0.89829 0.89539 0.93298 0.93676 0.86255 0.85795 0.88968 0.87817 0.93471 0.88136 0.90860 0.91290 0.94167 0.94420 0.80004 0.94320 0.95157 0.92395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -3.45 19.25 74.32 1.43 -2.02 16 2 C -0.22 -3.59 13.34 31.12 0.42 -3.17 16 3 C -0.01 -0.14 5.70 28.79 0.16 0.02 16 4 C -0.11 -1.55 5.17 30.59 0.16 -1.39 16 5 C -0.11 -1.14 5.21 30.59 0.16 -0.98 16 6 C -0.11 -1.95 4.50 30.59 0.14 -1.81 16 7 C -0.12 -1.95 4.90 29.85 0.15 -1.80 16 8 C 0.51 14.93 7.86 87.65 0.69 15.62 16 9 O -0.60 -24.98 16.26 -3.04 -0.05 -25.03 16 10 N -0.62 -16.90 3.34 -808.84 -2.70 -19.60 16 11 C 0.10 1.60 5.80 87.05 0.50 2.10 16 12 C -0.08 -1.50 3.59 -9.53 -0.03 -1.54 16 13 H 0.13 1.72 8.14 -2.39 -0.02 1.70 16 14 C -0.11 -1.90 4.67 30.61 0.14 -1.75 16 15 C -0.11 -2.48 5.91 30.71 0.18 -2.30 16 16 C -0.13 -4.39 5.31 30.64 0.16 -4.23 16 17 C 0.19 7.04 2.45 44.24 0.11 7.15 16 18 H 0.05 1.87 8.07 -2.39 -0.02 1.85 16 19 N -0.74 -38.16 5.03 -326.55 -1.64 -39.80 16 20 C -0.23 -13.01 9.89 84.03 0.83 -12.18 16 21 H 0.08 4.24 7.83 -2.91 -0.02 4.21 16 22 C -0.08 -4.89 5.50 84.86 0.47 -4.42 16 23 N -0.97 -62.69 13.06 21.65 0.28 -62.41 16 24 Si 0.97 47.45 29.55 68.60 2.03 49.48 16 25 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 26 H -0.30 -14.49 7.11 99.48 0.71 -13.79 16 27 H -0.30 -14.66 7.11 99.48 0.71 -13.95 16 28 C -0.09 -2.76 2.58 -10.67 -0.03 -2.79 16 29 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 30 C 0.12 4.36 5.13 86.50 0.44 4.80 16 31 H 0.24 2.00 7.80 -4.41 -0.03 1.96 16 32 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 35 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.05 1.10 8.10 -2.38 -0.02 1.08 16 39 H 0.04 1.05 8.10 -2.39 -0.02 1.03 16 40 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.12 1.24 8.14 -2.38 -0.02 1.22 16 42 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.10 1.03 7.76 -2.38 -0.02 1.01 16 44 H 0.05 1.00 7.00 -2.39 -0.02 0.98 16 45 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 46 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 47 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 48 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 49 H 0.04 1.41 6.69 -2.39 -0.02 1.39 16 50 H 0.37 21.03 6.52 -92.71 -0.60 20.43 16 51 H 0.25 15.52 8.31 -92.71 -0.77 14.75 16 52 H 0.03 1.38 7.39 -2.39 -0.02 1.36 16 53 H 0.06 2.20 5.83 -2.39 -0.01 2.18 16 Total: -1.00 -81.46 416.87 4.25 -77.21 By element: Atomic # 1 Polarization: 30.57 SS G_CDS: 0.26 Total: 30.83 kcal Atomic # 6 Polarization: -16.76 SS G_CDS: 6.08 Total: -10.68 kcal Atomic # 7 Polarization: -117.74 SS G_CDS: -4.06 Total: -121.80 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: -0.05 Total: -25.03 kcal Atomic # 14 Polarization: 47.45 SS G_CDS: 2.03 Total: 49.48 kcal Total: -81.46 4.25 -77.21 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486161810.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.763 kcal (2) G-P(sol) polarization free energy of solvation -81.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds