Wall clock time and date at job start Tue Mar 31 2020 17:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50691 * 119.99905 * 2 1 4 4 C 1.53008 * 109.47096 * 124.99909 * 3 2 1 5 5 C 1.52995 * 109.46840 * 59.99927 * 4 3 2 6 6 C 1.52993 * 109.46916 * 300.00263 * 4 3 2 7 7 C 1.50701 * 109.46971 * 180.02562 * 4 3 2 8 8 O 1.21277 * 120.00396 * 4.80082 * 7 4 3 9 9 N 1.34776 * 119.99593 * 184.80270 * 7 4 3 10 10 C 1.49822 * 125.89234 * 185.33049 * 9 7 4 11 11 C 1.49646 * 102.24812 * 203.50251 * 10 9 7 12 12 H 1.09002 * 105.91201 * 65.92394 * 11 10 9 13 13 C 1.56129 * 100.99354 * 316.73799 * 11 10 9 14 14 H 1.09001 * 109.63085 * 291.90498 * 13 11 10 15 15 C 1.49172 * 125.89355 * 5.31205 * 9 7 4 16 16 C 1.52194 * 104.16017 * 174.53442 * 13 11 10 17 17 H 1.08995 * 114.09079 * 209.21085 * 16 13 11 18 18 C 1.56345 * 102.64212 * 84.25984 * 16 13 11 19 19 C 1.55292 * 107.56728 * 322.54473 * 18 16 13 20 20 C 1.49343 * 129.20933 * 194.04974 * 11 10 9 21 21 H 1.09007 * 113.08914 * 327.93506 * 20 11 10 22 22 C 1.56476 * 102.85962 * 205.34028 * 20 11 10 23 23 N 1.49043 * 103.55414 * 323.33208 * 22 20 11 24 24 C 1.36935 * 122.53696 * 143.38925 * 23 22 20 25 25 H 1.08009 * 119.99341 * 201.17665 * 24 23 22 26 26 C 1.38812 * 120.00549 * 21.17128 * 24 23 22 27 27 N 1.31617 * 119.99892 * 10.05052 * 26 24 23 28 28 Si 1.86799 * 119.99954 * 190.04578 * 26 24 23 29 29 H 1.48498 * 109.47067 * 94.98721 * 28 26 24 30 30 H 1.48509 * 109.46978 * 214.98606 * 28 26 24 31 31 H 1.48499 * 109.47376 * 334.98687 * 28 26 24 32 32 H 1.07995 * 119.99901 * 0.02562 * 1 2 3 33 33 H 1.08007 * 119.99796 * 179.97438 * 1 2 3 34 34 H 1.08003 * 119.99574 * 179.97438 * 2 1 3 35 35 H 1.08997 * 109.47532 * 5.00351 * 3 2 1 36 36 H 1.08995 * 109.47362 * 244.99964 * 3 2 1 37 37 H 1.09002 * 109.46954 * 190.10073 * 5 4 3 38 38 H 1.09001 * 109.47565 * 310.10477 * 5 4 3 39 39 H 1.09000 * 109.47436 * 70.10623 * 5 4 3 40 40 H 1.09005 * 109.47252 * 306.47110 * 6 4 3 41 41 H 1.09000 * 109.47647 * 66.46949 * 6 4 3 42 42 H 1.08999 * 109.47210 * 186.47147 * 6 4 3 43 43 H 1.09000 * 110.85021 * 321.69190 * 10 9 7 44 44 H 1.08999 * 110.85215 * 85.31497 * 10 9 7 45 45 H 1.08997 * 110.32313 * 67.76348 * 15 9 7 46 46 H 1.08997 * 110.39941 * 305.60206 * 15 9 7 47 47 H 1.08999 * 109.94655 * 82.43388 * 18 16 13 48 48 H 1.09003 * 109.94562 * 203.67126 * 18 16 13 49 49 H 1.09008 * 110.90972 * 206.34626 * 19 18 16 50 50 H 1.08999 * 108.91391 * 85.62709 * 19 18 16 51 51 H 1.09003 * 110.63226 * 81.89208 * 22 20 11 52 52 H 1.09004 * 110.63220 * 204.78134 * 22 20 11 53 53 H 0.96993 * 120.00399 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0350 1.3330 1.1817 5 6 4.0245 0.1729 1.0560 6 6 2.2521 1.1961 2.4889 7 6 3.7881 2.6384 1.1820 8 8 3.5087 3.4999 0.3754 9 7 4.7720 2.8485 2.0788 10 6 5.5261 4.1286 2.2716 11 6 6.8008 3.6552 2.8965 12 1 7.3034 3.0588 2.1350 13 6 6.2586 2.6166 3.9285 14 1 5.7066 3.1340 4.7132 15 6 5.2977 1.8466 3.0510 16 6 7.5129 1.9839 4.5140 17 1 7.3784 0.9545 4.8461 18 6 7.9107 2.9922 5.6406 19 6 7.6099 4.4229 5.1169 20 6 7.8613 4.4440 3.5918 21 1 7.9758 5.4517 3.1921 22 6 9.1354 3.5551 3.4049 23 7 8.6106 2.1645 3.5162 24 6 9.0971 1.1311 2.7610 25 1 8.4981 0.2454 2.6080 26 6 10.3600 1.2216 2.1920 27 7 11.1672 2.2032 2.5344 28 14 10.9139 -0.0497 0.9405 29 1 10.6480 0.4563 -0.4301 30 1 12.3685 -0.3019 1.1015 31 1 10.1655 -1.3143 1.1550 32 1 -0.5400 0.9353 -0.0004 33 1 -0.5400 -0.9354 -0.0004 34 1 1.8500 -0.9354 0.0004 35 1 1.3586 2.1316 0.0896 36 1 2.6213 1.4026 -0.9313 37 1 4.5979 0.0828 1.9786 38 1 3.4780 -0.7529 0.8759 39 1 4.7026 0.3622 0.2239 40 1 1.4699 1.9544 2.5252 41 1 1.8002 0.2055 2.5399 42 1 2.9281 1.3309 3.3332 43 1 5.7198 4.6127 1.3144 44 1 4.9894 4.7976 2.9443 45 1 5.8218 1.0482 2.5257 46 1 4.4851 1.4354 3.6497 47 1 7.3290 2.7928 6.5406 48 1 8.9753 2.9056 5.8582 49 1 8.2518 5.1580 5.6025 50 1 6.5651 4.6601 5.3176 51 1 9.5787 3.7208 2.4229 52 1 9.8623 3.7553 4.1921 53 1 12.0498 2.2663 2.1371 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001489088040.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:00:42 Heat of formation + Delta-G solvation = 49.562389 kcal Electronic energy + Delta-G solvation = -31283.911680 eV Core-core repulsion = 27544.010711 eV Total energy + Delta-G solvation = -3739.900969 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 332.221 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.10427 -39.63052 -36.59718 -35.90537 -33.29995 -32.88632 -31.10410 -30.01882 -29.81911 -27.67253 -27.46452 -26.52085 -25.38107 -24.37522 -22.17391 -21.81817 -20.83523 -20.30421 -19.53342 -18.55257 -17.42496 -16.86093 -16.36712 -16.05185 -15.44074 -15.08625 -14.85817 -14.66515 -14.42148 -14.26466 -14.09459 -13.57229 -13.26860 -13.08106 -12.87095 -12.55481 -12.41450 -12.21635 -12.03481 -12.02317 -11.76215 -11.65034 -11.36493 -11.27495 -11.08352 -11.02558 -10.98327 -10.89812 -10.74459 -10.68501 -10.59854 -10.33143 -10.09194 -10.05977 -9.73390 -9.48923 -9.34141 -9.15453 -9.02694 -8.54186 -8.33591 -6.78842 -5.80505 -3.18660 2.14094 2.87036 3.13938 3.35384 3.41804 3.43304 4.40311 4.43780 4.66390 4.75996 4.83697 4.98327 5.02490 5.09820 5.17617 5.31347 5.34126 5.37723 5.47912 5.58182 5.59364 5.62360 5.66749 5.70095 5.71851 5.74120 5.81073 5.81901 5.89846 5.93191 5.97873 6.04531 6.09052 6.17592 6.21268 6.25136 6.28343 6.34936 6.40765 6.44836 6.50022 6.51322 6.63614 6.65673 6.80118 6.88699 7.02565 7.22035 7.39917 7.58642 7.75031 7.80093 8.25758 8.38911 9.12391 9.74409 10.37302 11.29663 Molecular weight = 332.22amu Principal moments of inertia in cm(-1) A = 0.012539 B = 0.004173 C = 0.003514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.434994 B = 6707.423746 C = 7965.934901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.144 4.144 3 C -0.070 4.070 4 C -0.071 4.071 5 C -0.157 4.157 6 C -0.143 4.143 7 C 0.538 3.462 8 O -0.553 6.553 9 N -0.616 5.616 10 C 0.130 3.870 11 C -0.112 4.112 12 H 0.099 0.901 13 C -0.133 4.133 14 H 0.069 0.931 15 C 0.111 3.889 16 C 0.180 3.820 17 H 0.080 0.920 18 C -0.129 4.129 19 C -0.108 4.108 20 C -0.100 4.100 21 H 0.073 0.927 22 C 0.189 3.811 23 N -0.594 5.594 24 C -0.242 4.242 25 H 0.068 0.932 26 C 0.001 3.999 27 N -0.911 5.911 28 Si 0.902 3.098 29 H -0.289 1.289 30 H -0.291 1.291 31 H -0.280 1.280 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.111 0.889 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.066 0.934 39 H 0.061 0.939 40 H 0.057 0.943 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.073 0.927 44 H 0.058 0.942 45 H 0.080 0.920 46 H 0.068 0.932 47 H 0.048 0.952 48 H 0.070 0.930 49 H 0.055 0.945 50 H 0.048 0.952 51 H 0.075 0.925 52 H 0.034 0.966 53 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.550 -1.110 2.858 15.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.162 4.162 3 C -0.108 4.108 4 C -0.074 4.074 5 C -0.214 4.214 6 C -0.200 4.200 7 C 0.326 3.674 8 O -0.431 6.431 9 N -0.349 5.349 10 C 0.009 3.991 11 C -0.132 4.132 12 H 0.117 0.883 13 C -0.154 4.154 14 H 0.087 0.913 15 C -0.011 4.011 16 C 0.072 3.928 17 H 0.098 0.902 18 C -0.168 4.168 19 C -0.145 4.145 20 C -0.120 4.120 21 H 0.091 0.909 22 C 0.065 3.935 23 N -0.318 5.318 24 C -0.372 4.372 25 H 0.086 0.914 26 C -0.197 4.197 27 N -0.557 5.557 28 Si 0.732 3.268 29 H -0.217 1.217 30 H -0.218 1.218 31 H -0.205 1.205 32 H 0.113 0.887 33 H 0.113 0.887 34 H 0.128 0.872 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.091 0.909 44 H 0.076 0.924 45 H 0.098 0.902 46 H 0.086 0.914 47 H 0.067 0.933 48 H 0.088 0.912 49 H 0.073 0.927 50 H 0.067 0.933 51 H 0.093 0.907 52 H 0.052 0.948 53 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -15.540 -0.700 2.277 15.721 hybrid contribution 0.405 -0.691 -0.661 1.039 sum -15.134 -1.391 1.616 15.284 Atomic orbital electron populations 1.23819 0.95919 1.01624 1.02285 1.23004 0.95924 0.98479 0.98804 1.20589 0.97422 0.95306 0.97473 1.20643 0.95814 0.93454 0.97460 1.22204 0.98676 0.96739 1.03747 1.21965 0.99959 1.02539 0.95532 1.20181 0.79099 0.88698 0.79432 1.90657 1.67238 1.46702 1.38546 1.49684 1.35453 1.13946 1.35849 1.21237 0.92101 0.85457 1.00289 1.21113 0.94269 0.98189 0.99589 0.88261 1.22929 0.96853 0.98447 0.97170 0.91294 1.21952 0.96459 0.91922 0.90726 1.21406 0.86913 0.95823 0.88629 0.90156 1.23074 1.01662 0.94833 0.97217 1.22275 0.99689 0.96627 0.95945 1.21809 0.97862 0.98586 0.93744 0.90912 1.22026 0.89376 0.81020 1.01107 1.45563 1.39343 1.05044 1.41850 1.19138 0.97090 0.97222 1.23713 0.91400 1.24928 0.95586 0.98274 1.00888 1.69936 1.08049 1.33012 1.44704 0.86272 0.77828 0.81082 0.81583 1.21670 1.21796 1.20549 0.88723 0.88681 0.87157 0.90823 0.90391 0.90565 0.91466 0.92035 0.92433 0.91368 0.91461 0.90877 0.92419 0.90175 0.91418 0.93315 0.91164 0.92660 0.93340 0.90696 0.94825 0.93674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.76 14.32 29.01 0.42 -1.34 16 2 C -0.14 -1.40 7.79 -36.03 -0.28 -1.68 16 3 C -0.07 -0.84 4.03 -27.88 -0.11 -0.96 16 4 C -0.07 -0.88 0.52 -155.66 -0.08 -0.96 16 5 C -0.16 -1.85 7.77 37.16 0.29 -1.56 16 6 C -0.14 -1.51 7.99 37.15 0.30 -1.21 16 7 C 0.54 8.71 6.57 -10.99 -0.07 8.63 16 8 O -0.55 -10.77 16.30 5.56 0.09 -10.68 16 9 N -0.62 -9.72 3.42 -171.72 -0.59 -10.31 16 10 C 0.13 2.12 6.85 -3.85 -0.03 2.09 16 11 C -0.11 -1.93 2.23 -92.40 -0.21 -2.14 16 12 H 0.10 2.12 6.14 -51.93 -0.32 1.81 16 13 C -0.13 -2.06 2.32 -90.26 -0.21 -2.27 16 14 H 0.07 1.00 6.23 -51.93 -0.32 0.68 16 15 C 0.11 1.60 4.58 -3.47 -0.02 1.58 16 16 C 0.18 3.22 4.53 -64.91 -0.29 2.93 16 17 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 18 C -0.13 -2.11 5.46 -23.72 -0.13 -2.24 16 19 C -0.11 -1.65 5.44 -24.68 -0.13 -1.78 16 20 C -0.10 -1.73 4.21 -89.72 -0.38 -2.11 16 21 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 22 C 0.19 4.15 4.08 -0.76 0.00 4.14 16 23 N -0.59 -13.24 1.81 -157.65 -0.29 -13.53 16 24 C -0.24 -6.14 9.84 -15.06 -0.15 -6.28 16 25 H 0.07 1.69 7.85 -52.48 -0.41 1.28 16 26 C 0.00 0.03 5.23 -17.43 -0.09 -0.06 16 27 N -0.91 -25.30 10.82 55.49 0.60 -24.70 16 28 Si 0.90 21.25 29.57 -169.99 -5.03 16.23 16 29 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 30 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 31 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 32 H 0.09 0.82 7.84 -52.49 -0.41 0.41 16 33 H 0.09 0.70 8.06 -52.48 -0.42 0.28 16 34 H 0.11 0.97 6.60 -52.48 -0.35 0.63 16 35 H 0.07 0.93 7.70 -51.93 -0.40 0.53 16 36 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.08 0.90 4.72 -51.93 -0.24 0.66 16 38 H 0.07 0.66 6.11 -51.93 -0.32 0.34 16 39 H 0.06 0.82 8.11 -51.93 -0.42 0.40 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.07 0.62 7.46 -51.93 -0.39 0.23 16 42 H 0.07 0.70 5.05 -51.93 -0.26 0.44 16 43 H 0.07 1.27 8.08 -51.93 -0.42 0.85 16 44 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.08 1.27 6.34 -51.93 -0.33 0.94 16 46 H 0.07 0.82 5.33 -51.93 -0.28 0.55 16 47 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.07 1.32 7.26 -51.93 -0.38 0.94 16 49 H 0.05 0.80 8.14 -51.92 -0.42 0.38 16 50 H 0.05 0.67 6.90 -51.93 -0.36 0.32 16 51 H 0.07 1.89 6.74 -51.93 -0.35 1.54 16 52 H 0.03 0.80 7.14 -51.93 -0.37 0.43 16 53 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 381.96 15.07 5.76 5.76 Total: -1.00 -28.70 381.96 -9.48 -38.18 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -8.84 Total: 4.28 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: -1.18 Total: -5.22 kcal Atomic # 7 Polarization: -48.27 SS G_CDS: -0.27 Total: -48.54 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.09 Total: -10.68 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.03 Total: 16.23 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -28.70 -9.48 -38.18 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489088040.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.739 kcal (2) G-P(sol) polarization free energy of solvation -28.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds