Wall clock time and date at job start Tue Mar 31 2020 17:00:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46696 * 2 1 4 4 C 1.52995 * 109.46928 * 240.00382 * 2 1 3 5 5 C 1.50698 * 109.47263 * 120.00345 * 2 1 3 6 6 C 1.32989 * 120.00252 * 65.89133 * 5 2 1 7 7 C 1.47107 * 119.99732 * 358.81399 * 6 5 2 8 8 O 1.21612 * 120.00151 * 354.56573 * 7 6 5 9 9 N 1.34781 * 119.99740 * 174.56926 * 7 6 5 10 10 C 1.49383 * 125.96652 * 179.97438 * 9 7 6 11 11 C 1.49722 * 104.30369 * 174.10018 * 10 9 7 12 12 H 1.08995 * 106.96837 * 283.47953 * 11 10 9 13 13 C 1.56583 * 101.63360 * 34.06709 * 11 10 9 14 14 H 1.09008 * 111.20454 * 67.14821 * 13 11 10 15 15 C 1.49646 * 125.96822 * 359.97216 * 9 7 6 16 16 C 1.52940 * 104.13185 * 186.51620 * 13 11 10 17 17 H 1.09001 * 114.58949 * 152.28021 * 16 13 11 18 18 C 1.56669 * 107.24661 * 23.66598 * 16 13 11 19 19 C 1.54142 * 109.45606 * 286.38084 * 18 16 13 20 20 C 1.49752 * 127.91457 * 155.53245 * 11 10 9 21 21 H 1.09000 * 113.23559 * 31.33338 * 20 11 10 22 22 C 1.54928 * 109.53153 * 262.85686 * 20 11 10 23 23 N 1.49808 * 106.89609 * 291.43432 * 22 20 11 24 24 C 1.36936 * 123.92392 * 215.36489 * 23 22 20 25 25 H 1.08001 * 120.00377 * 155.05366 * 24 23 22 26 26 C 1.38810 * 119.99638 * 335.05416 * 24 23 22 27 27 N 1.31618 * 120.00372 * 2.98013 * 26 24 23 28 28 Si 1.86805 * 119.99752 * 182.98499 * 26 24 23 29 29 H 1.48505 * 109.46917 * 90.00089 * 28 26 24 30 30 H 1.48497 * 109.46829 * 209.99531 * 28 26 24 31 31 H 1.48491 * 109.47209 * 330.00020 * 28 26 24 32 32 H 1.09000 * 109.47182 * 329.85287 * 1 2 3 33 33 H 1.08993 * 109.47354 * 89.86007 * 1 2 3 34 34 H 1.09009 * 109.46812 * 209.85889 * 1 2 3 35 35 H 1.09010 * 109.47174 * 180.02562 * 3 2 1 36 36 H 1.08997 * 109.47629 * 300.00283 * 3 2 1 37 37 H 1.09000 * 109.47503 * 60.00935 * 3 2 1 38 38 H 1.08998 * 109.47179 * 263.16752 * 4 2 1 39 39 H 1.09003 * 109.47644 * 23.16495 * 4 2 1 40 40 H 1.08995 * 109.47383 * 143.16516 * 4 2 1 41 41 H 1.08009 * 119.99854 * 245.88483 * 5 2 1 42 42 H 1.07995 * 120.00389 * 178.82042 * 6 5 2 43 43 H 1.09001 * 110.46896 * 292.80876 * 10 9 7 44 44 H 1.09001 * 110.46542 * 55.26600 * 10 9 7 45 45 H 1.08998 * 110.83294 * 36.22190 * 15 9 7 46 46 H 1.09002 * 110.83173 * 272.64372 * 15 9 7 47 47 H 1.08998 * 109.30220 * 166.46938 * 18 16 13 48 48 H 1.08999 * 109.59231 * 46.47420 * 18 16 13 49 49 H 1.09001 * 110.21727 * 279.65196 * 19 18 16 50 50 H 1.09001 * 110.21859 * 157.67775 * 19 18 16 51 51 H 1.09000 * 110.12882 * 49.91678 * 22 20 11 52 52 H 1.08996 * 110.12303 * 171.64435 * 22 20 11 53 53 H 0.96998 * 120.00078 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0324 -0.7105 1.2304 6 6 1.8105 -2.0128 1.3835 7 6 1.0522 -2.7544 0.3642 8 8 0.5438 -2.1606 -0.5673 9 7 0.9207 -4.0922 0.4629 10 6 0.1831 -4.9740 -0.4909 11 6 0.4684 -6.3621 -0.0076 12 1 1.4833 -6.6058 -0.3214 13 6 0.5439 -6.1477 1.5417 14 1 -0.4292 -5.8744 1.9498 15 6 1.4883 -4.9535 1.5471 16 6 0.9992 -7.5031 2.0844 17 1 1.5521 -7.4536 3.0225 18 6 1.7452 -8.2422 0.9218 19 6 0.7178 -8.7334 -0.1171 20 6 -0.3516 -7.5970 -0.2197 21 1 -0.8962 -7.5947 -1.1639 22 6 -1.2439 -7.8459 1.0222 23 7 -0.3293 -8.2241 2.1467 24 6 -0.6486 -9.1351 3.1180 25 1 0.1347 -9.6621 3.6426 26 6 -1.9790 -9.3812 3.4283 27 7 -2.9347 -8.7830 2.7493 28 14 -2.4129 -10.5614 4.8098 29 1 -2.5116 -9.8121 6.0882 30 1 -3.7154 -11.2109 4.5150 31 1 -1.3569 -11.5990 4.9244 32 1 -0.3633 0.8887 0.5161 33 1 -0.3634 0.0025 -1.0276 34 1 -0.3633 -0.8913 0.5117 35 1 3.1300 1.4426 -0.0005 36 1 1.6765 1.9564 -0.8899 37 1 1.6767 1.9563 0.8900 38 1 2.2763 -1.7557 -1.0005 39 1 1.2703 -0.6998 -2.0209 40 1 2.9365 -0.2218 -1.6165 41 1 2.5727 -0.1620 1.9879 42 1 2.1870 -2.5258 2.2560 43 1 -0.8866 -4.7687 -0.4504 44 1 0.5585 -4.8367 -1.5050 45 1 1.4570 -4.4388 2.5074 46 1 2.5051 -5.2624 1.3045 47 1 2.2886 -9.0956 1.3274 48 1 2.4466 -7.5580 0.4443 49 1 0.2526 -9.6591 0.2218 50 1 1.2009 -8.8843 -1.0824 51 1 -1.7798 -6.9346 1.2877 52 1 -1.9493 -8.6523 0.8216 53 1 -3.8644 -8.9547 2.9664 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689145708.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:00:55 Heat of formation + Delta-G solvation = 70.000659 kcal Electronic energy + Delta-G solvation = -30680.461311 eV Core-core repulsion = 26941.446612 eV Total energy + Delta-G solvation = -3739.014699 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 332.221 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.44793 -41.14769 -38.13998 -36.69728 -34.95971 -32.95186 -32.48419 -31.38780 -31.03154 -29.17842 -28.13118 -28.04288 -27.20363 -25.46848 -23.61911 -23.33917 -22.40258 -21.88721 -20.88677 -19.09600 -18.86088 -18.25110 -17.86555 -17.18252 -16.86335 -16.57342 -16.19437 -16.03331 -15.67310 -15.16911 -14.94454 -14.65544 -14.54044 -14.42722 -14.20466 -14.08517 -13.79621 -13.34979 -13.09683 -12.96954 -12.90456 -12.68230 -12.67794 -12.57372 -12.38629 -12.35033 -12.17175 -12.12753 -12.04735 -11.84924 -11.77851 -11.76767 -11.67351 -11.43302 -11.19815 -10.70099 -10.57789 -10.43388 -10.30208 -10.27470 -9.40163 -8.57653 -7.80696 -5.20929 0.51163 1.46528 1.47374 1.55433 1.99870 2.39920 2.50940 3.29774 3.34018 3.45852 3.65814 3.71731 3.84311 4.03134 4.14944 4.17758 4.24498 4.29740 4.36323 4.42190 4.47710 4.49344 4.52772 4.61229 4.69084 4.74844 4.80349 4.83501 4.86030 4.88910 4.92253 4.94431 4.96780 5.01916 5.10481 5.19873 5.23666 5.26980 5.27715 5.33009 5.38219 5.39328 5.44374 5.53677 5.53825 5.55723 5.58367 5.71710 5.72229 5.77840 5.87889 6.33407 6.65292 7.14122 7.29291 7.80358 8.50262 9.27511 Molecular weight = 332.22amu Principal moments of inertia in cm(-1) A = 0.020886 B = 0.002929 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.316003 B = 9558.796176 C = 9980.940504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.045 4.045 3 C -0.137 4.137 4 C -0.105 4.105 5 C -0.044 4.044 6 C -0.227 4.227 7 C 0.534 3.466 8 O -0.546 6.546 9 N -0.623 5.623 10 C 0.137 3.863 11 C -0.110 4.110 12 H 0.097 0.903 13 C -0.113 4.113 14 H 0.052 0.948 15 C 0.122 3.878 16 C 0.166 3.834 17 H 0.092 0.908 18 C -0.120 4.120 19 C -0.091 4.091 20 C -0.095 4.095 21 H 0.087 0.913 22 C 0.199 3.801 23 N -0.619 5.619 24 C -0.235 4.235 25 H 0.072 0.928 26 C -0.059 4.059 27 N -0.945 5.945 28 Si 0.963 3.037 29 H -0.289 1.289 30 H -0.301 1.301 31 H -0.269 1.269 32 H 0.044 0.956 33 H 0.041 0.959 34 H 0.042 0.958 35 H 0.066 0.934 36 H 0.054 0.946 37 H 0.065 0.935 38 H 0.047 0.953 39 H 0.040 0.960 40 H 0.039 0.961 41 H 0.157 0.843 42 H 0.146 0.854 43 H 0.041 0.959 44 H 0.076 0.924 45 H 0.087 0.913 46 H 0.097 0.903 47 H 0.052 0.948 48 H 0.083 0.917 49 H 0.038 0.962 50 H 0.073 0.927 51 H -0.013 1.013 52 H 0.039 0.961 53 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.859 14.705 -5.238 21.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.045 4.045 3 C -0.194 4.194 4 C -0.162 4.162 5 C -0.064 4.064 6 C -0.248 4.248 7 C 0.328 3.672 8 O -0.427 6.427 9 N -0.358 5.358 10 C 0.015 3.985 11 C -0.128 4.128 12 H 0.115 0.885 13 C -0.134 4.134 14 H 0.070 0.930 15 C 0.000 4.000 16 C 0.061 3.939 17 H 0.110 0.890 18 C -0.159 4.159 19 C -0.129 4.129 20 C -0.115 4.115 21 H 0.105 0.895 22 C 0.075 3.925 23 N -0.345 5.345 24 C -0.365 4.365 25 H 0.090 0.910 26 C -0.253 4.253 27 N -0.593 5.593 28 Si 0.793 3.207 29 H -0.216 1.216 30 H -0.228 1.228 31 H -0.194 1.194 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.085 0.915 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.066 0.934 39 H 0.059 0.941 40 H 0.058 0.942 41 H 0.174 0.826 42 H 0.164 0.836 43 H 0.059 0.941 44 H 0.094 0.906 45 H 0.106 0.894 46 H 0.115 0.885 47 H 0.071 0.929 48 H 0.102 0.898 49 H 0.057 0.943 50 H 0.091 0.909 51 H 0.005 0.995 52 H 0.058 0.942 53 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 14.439 15.015 -5.657 21.585 hybrid contribution -1.413 -1.083 0.872 1.982 sum 13.026 13.932 -4.785 19.664 Atomic orbital electron populations 1.21849 0.94094 0.99557 1.00948 1.19735 0.95598 0.95704 0.93484 1.21973 1.01358 0.93786 1.02277 1.21991 0.98630 0.99447 0.96120 1.24146 0.91835 0.93825 0.96563 1.22679 1.05135 0.96247 1.00726 1.18692 0.81685 0.80217 0.86618 1.90924 1.49802 1.66413 1.35571 1.49761 1.53317 1.05883 1.26808 1.20915 0.95601 0.89040 0.92908 1.21485 1.02406 0.92689 0.96249 0.88533 1.22931 0.98959 0.94919 0.96547 0.92959 1.22135 0.97302 0.90006 0.90560 1.22413 0.86888 0.88116 0.96487 0.88990 1.22901 0.97251 0.99641 0.96114 1.22240 0.95805 0.96784 0.98077 1.21886 0.97204 0.93946 0.98473 0.89470 1.21295 0.90404 0.95896 0.84943 1.46305 1.14231 1.46762 1.27155 1.19430 0.91240 1.14216 1.11601 0.90985 1.25786 0.96372 1.02091 1.01019 1.70127 0.98718 1.47677 1.42754 0.85306 0.76937 0.78696 0.79779 1.21629 1.22766 1.19360 0.93686 0.94014 0.93938 0.91482 0.92640 0.91625 0.93367 0.94134 0.94216 0.82575 0.83622 0.94099 0.90571 0.89439 0.88452 0.92939 0.89846 0.94318 0.90862 0.99526 0.94242 0.94702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.62 7.56 71.98 0.54 -2.08 16 2 C -0.05 -0.91 0.75 -52.93 -0.04 -0.95 16 3 C -0.14 -1.98 8.02 71.98 0.58 -1.41 16 4 C -0.10 -2.45 7.54 71.98 0.54 -1.90 16 5 C -0.04 -0.77 8.55 24.52 0.21 -0.56 16 6 C -0.23 -4.68 8.97 23.43 0.21 -4.47 16 7 C 0.53 14.67 5.89 86.57 0.51 15.18 16 8 O -0.55 -17.17 8.69 -4.07 -0.04 -17.20 16 9 N -0.62 -17.14 3.43 -817.68 -2.80 -19.94 16 10 C 0.14 4.07 6.85 84.77 0.58 4.65 16 11 C -0.11 -3.26 2.19 -11.64 -0.03 -3.28 16 12 H 0.10 2.48 4.86 -2.39 -0.01 2.47 16 13 C -0.11 -3.67 2.37 -9.81 -0.02 -3.69 16 14 H 0.05 2.21 6.40 -2.38 -0.02 2.20 16 15 C 0.12 2.93 6.27 85.52 0.54 3.47 16 16 C 0.17 5.84 4.74 45.31 0.21 6.05 16 17 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16 18 C -0.12 -3.55 5.58 32.26 0.18 -3.37 16 19 C -0.09 -2.97 5.63 32.16 0.18 -2.79 16 20 C -0.10 -3.33 4.35 -10.00 -0.04 -3.37 16 21 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 22 C 0.20 9.42 4.00 86.39 0.35 9.76 16 23 N -0.62 -29.20 2.25 -647.18 -1.45 -30.65 16 24 C -0.23 -12.49 10.08 84.03 0.85 -11.64 16 25 H 0.07 3.70 7.83 -2.91 -0.02 3.67 16 26 C -0.06 -3.28 5.43 84.86 0.46 -2.81 16 27 N -0.94 -56.30 10.64 21.65 0.23 -56.07 16 28 Si 0.96 45.16 29.55 68.60 2.03 47.19 16 29 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 30 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 31 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 32 H 0.04 0.94 7.82 -2.39 -0.02 0.92 16 33 H 0.04 1.12 7.21 -2.39 -0.02 1.10 16 34 H 0.04 1.24 5.45 -2.38 -0.01 1.23 16 35 H 0.07 0.80 8.12 -2.38 -0.02 0.78 16 36 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.06 0.81 8.11 -2.39 -0.02 0.79 16 38 H 0.05 1.26 4.82 -2.39 -0.01 1.25 16 39 H 0.04 1.09 6.79 -2.39 -0.02 1.07 16 40 H 0.04 0.78 7.73 -2.39 -0.02 0.76 16 41 H 0.16 1.69 7.99 -2.91 -0.02 1.66 16 42 H 0.15 2.35 6.85 -2.91 -0.02 2.33 16 43 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 45 H 0.09 1.90 7.14 -2.39 -0.02 1.88 16 46 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 47 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 48 H 0.08 1.93 6.33 -2.39 -0.02 1.91 16 49 H 0.04 1.53 7.64 -2.39 -0.02 1.51 16 50 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 51 H -0.01 -0.71 6.88 -2.39 -0.02 -0.73 16 52 H 0.04 2.17 6.71 -2.39 -0.02 2.16 16 53 H 0.24 14.32 8.31 -92.71 -0.77 13.55 16 Total: -1.00 -66.23 378.78 4.66 -61.57 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: 0.89 Total: 18.32 kcal Atomic # 6 Polarization: -9.02 SS G_CDS: 5.81 Total: -3.21 kcal Atomic # 7 Polarization: -102.64 SS G_CDS: -4.03 Total: -106.66 kcal Atomic # 8 Polarization: -17.17 SS G_CDS: -0.04 Total: -17.20 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -66.23 4.66 -61.57 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689145708.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.568 kcal (2) G-P(sol) polarization free energy of solvation -66.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds