Wall clock time and date at job start Tue Mar 31 2020 17:04:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.50701 * 119.99772 * 2 1 4 4 C 1.30996 * 119.99909 * 179.97438 * 2 1 3 5 5 C 1.50700 * 119.99832 * 174.85639 * 4 2 1 6 6 C 1.50701 * 120.00418 * 354.85874 * 4 2 1 7 7 C 1.50693 * 109.47131 * 94.99617 * 6 4 2 8 8 O 1.21281 * 120.00536 * 0.02562 * 7 6 4 9 9 N 1.34779 * 119.99870 * 180.02562 * 7 6 4 10 10 C 1.48168 * 127.83606 * 359.96102 * 9 7 6 11 11 C 1.54677 * 104.92627 * 139.88051 * 10 9 7 12 12 H 1.09002 * 112.00323 * 263.82186 * 11 10 9 13 13 C 1.55465 * 104.22342 * 24.66658 * 11 10 9 14 14 H 1.08999 * 111.02683 * 239.11697 * 13 11 10 15 15 C 1.48139 * 127.83907 * 180.02562 * 9 7 6 16 16 C 1.53027 * 109.83353 * 116.19646 * 13 11 10 17 17 H 1.08996 * 110.12801 * 179.90281 * 16 13 11 18 18 C 1.53241 * 109.18789 * 300.49528 * 16 13 11 19 19 C 1.52945 * 110.06592 * 59.30323 * 18 16 13 20 20 C 1.53227 * 108.99774 * 140.76361 * 11 10 9 21 21 H 1.09004 * 110.49514 * 68.76469 * 20 11 10 22 22 N 1.47699 * 108.05461 * 189.76489 * 20 11 10 23 23 C 1.36932 * 122.07028 * 239.33112 * 22 20 11 24 24 H 1.08001 * 120.00174 * 359.97438 * 23 22 20 25 25 C 1.38814 * 120.00021 * 179.97438 * 23 22 20 26 26 N 1.31620 * 119.99874 * 0.02562 * 25 23 22 27 27 Si 1.86798 * 120.00229 * 180.02562 * 25 23 22 28 28 H 1.48499 * 109.47056 * 90.00130 * 27 25 23 29 29 H 1.48501 * 109.46870 * 210.00302 * 27 25 23 30 30 H 1.48499 * 109.46866 * 330.00108 * 27 25 23 31 31 C 1.47635 * 115.85582 * 59.31377 * 22 20 11 32 32 H 1.09002 * 109.47386 * 239.99708 * 1 2 3 33 33 H 1.09004 * 109.47347 * 0.02562 * 1 2 3 34 34 H 1.09005 * 109.46933 * 119.99773 * 1 2 3 35 35 H 1.08992 * 109.46954 * 244.86792 * 3 2 1 36 36 H 1.09004 * 109.47265 * 4.87049 * 3 2 1 37 37 H 1.09001 * 109.46854 * 124.87145 * 3 2 1 38 38 H 1.09005 * 109.47231 * 275.24342 * 5 4 2 39 39 H 1.09003 * 109.47197 * 35.24264 * 5 4 2 40 40 H 1.08998 * 109.47475 * 155.24256 * 5 4 2 41 41 H 1.09006 * 109.46784 * 334.99620 * 6 4 2 42 42 H 1.09003 * 109.47090 * 215.00029 * 6 4 2 43 43 H 1.09008 * 110.42176 * 259.10869 * 10 9 7 44 44 H 1.09003 * 110.41926 * 21.45530 * 10 9 7 45 45 H 1.08993 * 110.40240 * 100.57929 * 15 9 7 46 46 H 1.09001 * 110.39662 * 338.16546 * 15 9 7 47 47 H 1.09007 * 109.35438 * 299.12641 * 18 16 13 48 48 H 1.08998 * 109.26545 * 179.42678 * 18 16 13 49 49 H 1.08997 * 109.45290 * 240.66767 * 19 18 16 50 50 H 1.09003 * 109.42792 * 120.72221 * 19 18 16 51 51 H 0.96997 * 120.00267 * 180.02562 * 26 25 23 52 52 H 1.09006 * 109.99626 * 119.45971 * 31 22 20 53 53 H 1.08998 * 110.00070 * 240.74619 * 31 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1620 -1.1345 0.0005 5 6 3.6644 -1.1371 -0.1165 6 6 1.4131 -2.4369 0.1180 7 6 1.1606 -2.9971 -1.2579 8 8 1.5507 -2.3980 -2.2376 9 7 0.5011 -4.1640 -1.3999 10 6 -0.0470 -5.0338 -0.3330 11 6 -1.4096 -5.5223 -0.8780 12 1 -2.2371 -4.9130 -0.5143 13 6 -1.2608 -5.4239 -2.4224 14 1 -2.0133 -4.7589 -2.8462 15 6 0.1611 -4.8684 -2.6579 16 6 -1.3563 -6.8193 -3.0431 17 1 -1.2543 -6.7557 -4.1264 18 6 -0.2441 -7.7033 -2.4688 19 6 -0.3826 -7.7996 -0.9487 20 6 -1.6033 -6.9924 -0.4918 21 1 -1.7435 -7.0888 0.5849 22 7 -2.7852 -7.5038 -1.2151 23 6 -3.8761 -8.0093 -0.5598 24 1 -3.8898 -8.0432 0.5196 25 6 -4.9643 -8.4782 -1.2828 26 7 -4.9474 -8.4373 -2.5982 27 14 -6.4528 -9.1672 -0.3889 28 1 -7.4192 -8.0722 -0.1197 29 1 -7.1010 -10.2033 -1.2325 30 1 -6.0215 -9.7737 0.8961 31 6 -2.7176 -7.4358 -2.6883 32 1 -0.3634 -0.5139 0.8900 33 1 -0.3634 1.0277 -0.0005 34 1 -0.3633 -0.5138 -0.8900 35 1 2.8201 1.4016 -0.9303 36 1 1.5553 2.1318 0.0873 37 1 2.9510 1.3260 0.8432 38 1 3.9471 -1.0903 -1.1682 39 1 4.0713 -0.2725 0.4079 40 1 4.0618 -2.0505 0.3261 41 1 0.4612 -2.2647 0.6205 42 1 2.0059 -3.1460 0.6959 43 1 0.6186 -5.8777 -0.1508 44 1 -0.1960 -4.4632 0.5838 45 1 0.8623 -5.6830 -2.8388 46 1 0.1626 -4.1714 -3.4960 47 1 0.7253 -7.2710 -2.7169 48 1 -0.3172 -8.7006 -2.9025 49 1 0.5146 -7.3995 -0.4763 50 1 -0.5094 -8.8434 -0.6616 51 1 -5.7079 -8.7646 -3.1035 52 1 -2.7949 -8.4374 -3.1116 53 1 -3.5222 -6.8072 -3.0698 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692143545.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:04:28 Heat of formation + Delta-G solvation = -7.480154 kcal Electronic energy + Delta-G solvation = -30373.678934 eV Core-core repulsion = 26631.304415 eV Total energy + Delta-G solvation = -3742.374519 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 332.221 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.09300 -40.38907 -38.03883 -37.02392 -34.98031 -33.28842 -32.27843 -31.68547 -31.37622 -30.33860 -28.88563 -27.44106 -26.99876 -25.38335 -24.31184 -23.64525 -22.41985 -22.19595 -20.47064 -19.14916 -18.20700 -17.88083 -17.62703 -17.19819 -16.77420 -16.56975 -16.32152 -16.00842 -15.61253 -15.48270 -15.02093 -14.92844 -14.45532 -14.15793 -14.12293 -13.74134 -13.71187 -13.69775 -13.32786 -13.15198 -13.00644 -12.98413 -12.87671 -12.83757 -12.79633 -12.61378 -12.53419 -12.33683 -12.15591 -12.13930 -12.04152 -11.87668 -11.73525 -11.57196 -11.16350 -10.94454 -10.77959 -10.68329 -10.47654 -9.63750 -9.35296 -8.80332 -7.72082 -5.09998 1.15751 1.47683 1.48088 1.56504 1.67325 2.11439 2.53498 3.39264 3.51612 3.54256 3.75282 3.78189 3.86365 3.98332 4.05766 4.16537 4.19063 4.25707 4.31242 4.33959 4.42608 4.45781 4.52890 4.58375 4.64729 4.68600 4.69314 4.72349 4.79535 4.79956 4.86736 4.89450 4.94103 5.03275 5.03341 5.04567 5.08497 5.12944 5.15754 5.19605 5.22951 5.28733 5.39879 5.47268 5.54036 5.58333 5.66001 5.78196 5.80664 5.92936 6.11257 6.31881 6.64302 7.20015 7.21361 7.93188 8.43602 9.30919 Molecular weight = 332.22amu Principal moments of inertia in cm(-1) A = 0.020188 B = 0.002883 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.663906 B = 9709.295740 C =10288.872640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.137 4.137 3 C -0.111 4.111 4 C -0.134 4.134 5 C -0.109 4.109 6 C -0.096 4.096 7 C 0.532 3.468 8 O -0.584 6.584 9 N -0.621 5.621 10 C 0.106 3.894 11 C -0.100 4.100 12 H 0.064 0.936 13 C -0.076 4.076 14 H 0.051 0.949 15 C 0.111 3.889 16 C -0.102 4.102 17 H 0.071 0.929 18 C -0.101 4.101 19 C -0.126 4.126 20 C 0.172 3.828 21 H 0.074 0.926 22 N -0.616 5.616 23 C -0.236 4.236 24 H 0.083 0.917 25 C -0.070 4.070 26 N -0.953 5.953 27 Si 0.968 3.032 28 H -0.291 1.291 29 H -0.301 1.301 30 H -0.268 1.268 31 C 0.215 3.785 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.041 0.959 35 H 0.059 0.941 36 H 0.066 0.934 37 H 0.079 0.921 38 H 0.051 0.949 39 H 0.078 0.922 40 H 0.067 0.933 41 H 0.110 0.890 42 H 0.122 0.878 43 H 0.104 0.896 44 H 0.100 0.900 45 H 0.093 0.907 46 H 0.060 0.940 47 H 0.082 0.918 48 H 0.045 0.955 49 H 0.094 0.906 50 H 0.047 0.953 51 H 0.241 0.759 52 H 0.011 0.989 53 H 0.004 0.996 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.083 12.705 8.285 22.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.137 4.137 3 C -0.168 4.168 4 C -0.134 4.134 5 C -0.166 4.166 6 C -0.136 4.136 7 C 0.323 3.677 8 O -0.464 6.464 9 N -0.354 5.354 10 C -0.016 4.016 11 C -0.121 4.121 12 H 0.083 0.917 13 C -0.095 4.095 14 H 0.070 0.930 15 C -0.011 4.011 16 C -0.121 4.121 17 H 0.089 0.911 18 C -0.138 4.138 19 C -0.165 4.165 20 C 0.066 3.934 21 H 0.092 0.908 22 N -0.340 5.340 23 C -0.365 4.365 24 H 0.101 0.899 25 C -0.263 4.263 26 N -0.603 5.603 27 Si 0.798 3.202 28 H -0.219 1.219 29 H -0.228 1.228 30 H -0.192 1.192 31 C 0.091 3.909 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.060 0.940 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.098 0.902 38 H 0.070 0.930 39 H 0.097 0.903 40 H 0.086 0.914 41 H 0.128 0.872 42 H 0.140 0.860 43 H 0.121 0.879 44 H 0.118 0.882 45 H 0.111 0.889 46 H 0.079 0.921 47 H 0.100 0.900 48 H 0.064 0.936 49 H 0.112 0.888 50 H 0.065 0.935 51 H 0.050 0.950 52 H 0.029 0.971 53 H 0.022 0.978 Dipole moment (debyes) X Y Z Total from point charges 17.202 13.039 7.724 22.926 hybrid contribution -1.833 -0.731 -0.474 2.029 sum 15.369 12.308 7.250 20.983 Atomic orbital electron populations 1.20860 0.92449 1.02791 1.01254 1.21652 0.95806 0.95478 1.00771 1.20837 0.99994 0.93847 1.02100 1.20998 0.96297 0.92922 1.03181 1.20763 0.91378 1.03096 1.01313 1.20789 1.03107 0.96612 0.93047 1.20823 0.76224 0.78370 0.92243 1.90667 1.53302 1.59829 1.42602 1.49137 1.55607 1.21211 1.09433 1.22882 0.93451 0.94531 0.90726 1.22800 0.96829 0.98023 0.94497 0.91720 1.22032 0.95637 0.95652 0.96227 0.93014 1.22526 0.95404 0.95868 0.87350 1.21680 0.96740 0.94498 0.99221 0.91053 1.21494 0.97622 0.98589 0.96138 1.22097 0.98588 0.99984 0.95837 1.20816 0.86605 0.90518 0.95499 0.90782 1.44880 1.15318 1.71762 1.02046 1.19688 0.93905 1.31551 0.91401 0.89918 1.25555 1.01259 1.03118 0.96324 1.70281 1.30648 1.54019 1.05393 0.85214 0.79942 0.77343 0.77684 1.21881 1.22818 1.19244 1.20642 0.91158 0.96169 0.82978 0.90453 0.91113 0.94026 0.92207 0.91465 0.90193 0.92985 0.90316 0.91446 0.87166 0.86035 0.87853 0.88184 0.88927 0.92127 0.89991 0.93581 0.88807 0.93460 0.94961 0.97087 0.97752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.21 8.82 71.24 0.63 -1.58 16 2 C -0.14 -2.65 6.05 -16.48 -0.10 -2.75 16 3 C -0.11 -1.68 8.83 71.24 0.63 -1.05 16 4 C -0.13 -2.64 4.54 -16.48 -0.07 -2.72 16 5 C -0.11 -1.87 9.54 71.24 0.68 -1.19 16 6 C -0.10 -1.80 4.40 29.10 0.13 -1.67 16 7 C 0.53 14.16 7.91 87.65 0.69 14.85 16 8 O -0.58 -20.32 16.30 -3.03 -0.05 -20.37 16 9 N -0.62 -15.63 3.32 -807.21 -2.68 -18.31 16 10 C 0.11 2.25 6.18 86.63 0.54 2.79 16 11 C -0.10 -3.03 3.48 -9.30 -0.03 -3.06 16 12 H 0.06 2.18 8.14 -2.39 -0.02 2.17 16 13 C -0.08 -2.46 3.14 -9.44 -0.03 -2.49 16 14 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 15 C 0.11 3.08 6.34 86.56 0.55 3.63 16 16 C -0.10 -3.63 2.87 -10.50 -0.03 -3.66 16 17 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 18 C -0.10 -3.03 5.31 30.66 0.16 -2.87 16 19 C -0.13 -3.67 5.52 30.68 0.17 -3.50 16 20 C 0.17 5.96 3.16 44.94 0.14 6.10 16 21 H 0.07 2.46 7.99 -2.39 -0.02 2.44 16 22 N -0.62 -29.15 2.87 -670.15 -1.92 -31.07 16 23 C -0.24 -12.51 9.99 84.03 0.84 -11.67 16 24 H 0.08 4.15 7.79 -2.91 -0.02 4.13 16 25 C -0.07 -3.93 5.47 84.86 0.46 -3.46 16 26 N -0.95 -56.91 9.77 21.65 0.21 -56.70 16 27 Si 0.97 45.35 29.55 68.60 2.03 47.37 16 28 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 29 H -0.30 -14.44 7.11 99.48 0.71 -13.74 16 30 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 31 C 0.22 10.40 4.36 86.36 0.38 10.78 16 32 H 0.08 1.24 7.20 -2.39 -0.02 1.22 16 33 H 0.07 1.15 7.71 -2.38 -0.02 1.13 16 34 H 0.04 0.99 8.14 -2.38 -0.02 0.97 16 35 H 0.06 0.97 8.13 -2.39 -0.02 0.95 16 36 H 0.07 0.88 7.71 -2.38 -0.02 0.87 16 37 H 0.08 0.96 7.28 -2.39 -0.02 0.94 16 38 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 39 H 0.08 1.06 6.50 -2.39 -0.02 1.04 16 40 H 0.07 0.98 8.03 -2.39 -0.02 0.96 16 41 H 0.11 1.80 6.09 -2.38 -0.01 1.78 16 42 H 0.12 1.64 8.07 -2.39 -0.02 1.63 16 43 H 0.10 1.84 5.21 -2.38 -0.01 1.83 16 44 H 0.10 1.62 7.30 -2.39 -0.02 1.60 16 45 H 0.09 2.31 5.31 -2.39 -0.01 2.29 16 46 H 0.06 1.86 7.88 -2.39 -0.02 1.84 16 47 H 0.08 1.97 5.80 -2.38 -0.01 1.96 16 48 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 49 H 0.09 1.99 5.67 -2.39 -0.01 1.97 16 50 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 51 H 0.24 14.20 8.31 -92.71 -0.77 13.43 16 52 H 0.01 0.61 7.22 -2.38 -0.02 0.59 16 53 H 0.00 0.24 7.23 -2.39 -0.02 0.22 16 Total: -1.00 -70.16 388.48 4.21 -65.95 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: 0.89 Total: 16.65 kcal Atomic # 6 Polarization: -9.26 SS G_CDS: 5.73 Total: -3.53 kcal Atomic # 7 Polarization: -101.68 SS G_CDS: -4.39 Total: -106.07 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: -0.05 Total: -20.37 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.37 kcal Total: -70.16 4.21 -65.95 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692143545.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.470 kcal (2) G-P(sol) polarization free energy of solvation -70.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds