Wall clock time and date at job start Tue Mar 31 2020 17:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46498 * 109.46986 * 154.43292 * 3 2 1 5 5 C 1.34778 * 119.99717 * 84.26477 * 4 3 2 6 6 O 1.21277 * 120.00240 * 5.19125 * 5 4 3 7 7 C 1.50693 * 120.00038 * 185.18498 * 5 4 3 8 8 H 1.09006 * 109.47570 * 305.85702 * 7 5 4 9 9 C 1.53002 * 109.47049 * 65.85238 * 7 5 4 10 10 C 1.52994 * 109.47078 * 59.99875 * 9 7 5 11 11 C 1.53006 * 109.47097 * 60.00290 * 10 9 7 12 12 C 1.53002 * 109.46919 * 299.99807 * 11 10 9 13 13 H 1.08996 * 109.47008 * 300.00051 * 12 11 10 14 14 C 1.52997 * 109.46856 * 179.97438 * 12 11 10 15 15 C 1.52997 * 109.47502 * 185.85100 * 7 5 4 16 16 C 1.46497 * 120.00315 * 264.26448 * 4 3 2 17 17 C 1.53037 * 109.45979 * 54.64390 * 16 4 3 18 18 C 1.53188 * 109.31390 * 178.60542 * 17 16 4 19 19 N 1.46928 * 108.77040 * 54.65319 * 18 17 16 20 20 C 1.36933 * 120.63209 * 126.40376 * 19 18 17 21 21 H 1.08003 * 120.00194 * 328.36802 * 20 19 18 22 22 C 1.38810 * 119.99796 * 148.36202 * 20 19 18 23 23 N 1.31626 * 120.00322 * 348.57529 * 22 20 19 24 24 Si 1.86802 * 119.99916 * 168.57690 * 22 20 19 25 25 H 1.48502 * 109.47409 * 90.00155 * 24 22 20 26 26 H 1.48505 * 109.46938 * 210.00266 * 24 22 20 27 27 H 1.48497 * 109.47045 * 329.99486 * 24 22 20 28 28 C 1.46931 * 118.73614 * 306.38844 * 19 18 17 29 29 C 1.53044 * 109.45870 * 294.59118 * 16 4 3 30 30 H 4.40639 * 5.51466 * 180.02562 * 4 1 2 31 31 H 1.09008 * 109.46783 * 34.43402 * 3 2 1 32 32 H 1.09002 * 109.47172 * 274.43802 * 3 2 1 33 33 H 1.09004 * 109.47567 * 180.02562 * 9 7 5 34 34 H 1.09004 * 109.46941 * 300.00182 * 9 7 5 35 35 H 1.09004 * 109.47182 * 179.97438 * 10 9 7 36 36 H 1.08998 * 109.47611 * 300.00385 * 10 9 7 37 37 H 1.09000 * 109.46976 * 180.02562 * 11 10 9 38 38 H 1.09004 * 109.46834 * 60.00051 * 11 10 9 39 39 H 1.09002 * 109.47540 * 300.00385 * 14 12 11 40 40 H 1.09000 * 109.46843 * 60.00586 * 14 12 11 41 41 H 1.08996 * 109.46989 * 180.02562 * 14 12 11 42 42 H 1.09002 * 109.47540 * 180.02562 * 15 7 5 43 43 H 1.08999 * 109.47193 * 60.00575 * 15 7 5 44 44 H 1.08997 * 109.46409 * 174.61866 * 16 4 3 45 45 H 1.09009 * 109.49787 * 298.56527 * 17 16 4 46 46 H 1.08999 * 109.49987 * 58.66160 * 17 16 4 47 47 H 1.09005 * 109.59689 * 294.86294 * 18 17 16 48 48 H 1.08999 * 109.70780 * 174.50905 * 18 17 16 49 49 H 0.97001 * 120.00136 * 180.02562 * 23 22 20 50 50 H 1.08993 * 109.58658 * 293.81995 * 28 19 18 51 51 H 1.08997 * 109.58325 * 173.39567 * 28 19 18 52 52 H 1.09000 * 109.49765 * 301.33709 * 29 16 4 53 53 H 1.08998 * 109.49984 * 61.40151 * 29 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.2468 -0.5961 5 6 3.2478 2.3563 0.1606 6 8 3.0374 2.3009 1.3537 7 6 3.6371 3.6656 -0.4757 8 1 4.5654 3.5373 -1.0325 9 6 2.5293 4.1186 -1.4289 10 6 1.2263 4.2988 -0.6475 11 6 1.4262 5.3554 0.4409 12 6 2.5340 4.9023 1.3941 13 1 2.2525 3.9553 1.8543 14 6 2.7343 5.9592 2.4821 15 6 3.8370 4.7222 0.6126 16 6 3.4974 1.2871 -2.0146 17 6 2.3185 0.7951 -2.8574 18 6 2.6900 0.8715 -4.3416 19 7 3.9375 0.1254 -4.5557 20 6 4.0071 -0.8599 -5.5041 21 1 3.1321 -1.4489 -5.7362 22 6 5.2024 -1.1017 -6.1672 23 7 6.2007 -0.2512 -6.0555 24 14 5.3940 -2.6341 -7.2182 25 1 4.9697 -2.3363 -8.6098 26 1 6.8162 -3.0617 -7.2150 27 1 4.5487 -3.7225 -6.6650 28 6 5.1090 0.4570 -3.7332 29 6 4.7103 0.3854 -2.2558 30 1 -1.0502 -0.0002 0.0003 31 1 3.0097 -0.8469 -0.5812 32 1 3.0094 -0.0787 1.0246 33 1 2.8110 5.0655 -1.8896 34 1 2.3869 3.3659 -2.2043 35 1 0.4372 4.6219 -1.3265 36 1 0.9448 3.3517 -0.1872 37 1 0.4980 5.4833 0.9978 38 1 1.7077 6.3024 -0.0195 39 1 3.0160 6.9061 2.0215 40 1 1.8061 6.0879 3.0388 41 1 3.5238 5.6367 3.1609 42 1 4.1181 5.6694 0.1523 43 1 4.6262 4.3995 1.2917 44 1 3.7438 2.3105 -2.2974 45 1 2.0877 -0.2369 -2.5926 46 1 1.4483 1.4233 -2.6675 47 1 2.8330 1.9130 -4.6295 48 1 1.8938 0.4324 -4.9428 49 1 7.0359 -0.4200 -6.5192 50 1 5.4493 1.4646 -3.9714 51 1 5.9082 -0.2572 -3.9311 52 1 5.5425 0.7221 -1.6377 53 1 4.4568 -0.6424 -1.9963 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699784758.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:56 Heat of formation + Delta-G solvation = 11.690112 kcal Electronic energy + Delta-G solvation = -31003.501118 eV Core-core repulsion = 27261.957884 eV Total energy + Delta-G solvation = -3741.543234 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 332.221 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.99518 -39.55794 -38.37644 -36.75015 -34.65680 -33.96747 -33.23411 -31.90512 -31.70543 -31.22677 -28.53251 -27.17852 -26.92459 -24.33727 -23.83255 -23.64522 -22.54116 -21.39659 -20.82625 -19.98936 -19.08058 -18.55798 -17.70418 -17.20998 -16.67768 -16.53767 -16.20738 -15.63043 -15.36138 -15.31372 -15.15763 -15.04370 -14.76597 -14.44992 -14.31256 -14.14195 -14.04302 -13.89654 -13.29080 -13.16404 -13.06027 -12.95798 -12.92279 -12.72579 -12.61564 -12.47104 -12.31361 -12.08313 -11.96806 -11.87890 -11.82760 -11.72147 -11.48776 -11.37639 -11.28995 -11.05600 -10.96498 -10.91266 -10.55162 -10.27196 -9.73699 -8.60423 -7.85370 -5.34736 1.43340 1.48158 1.49978 1.58253 1.66844 1.92143 2.41965 2.52390 3.31488 3.43092 3.53600 3.70158 3.76211 3.79108 3.80783 3.99285 4.07774 4.21595 4.25154 4.31710 4.37511 4.48242 4.49679 4.50602 4.52857 4.63679 4.67703 4.70906 4.80826 4.85204 4.89664 4.94992 4.99144 5.01617 5.04605 5.06994 5.09544 5.09808 5.15827 5.19541 5.32067 5.32574 5.37028 5.41480 5.45131 5.50905 5.58607 5.67979 5.76081 5.78223 6.41175 6.44843 6.68628 7.19175 7.19349 7.88166 8.40040 9.20625 Molecular weight = 332.22amu Principal moments of inertia in cm(-1) A = 0.018113 B = 0.003362 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.503132 B = 8327.603023 C = 8856.570312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.226 4.226 3 C 0.220 3.780 4 N -0.598 5.598 5 C 0.525 3.475 6 O -0.563 6.563 7 C -0.110 4.110 8 H 0.102 0.898 9 C -0.115 4.115 10 C -0.116 4.116 11 C -0.107 4.107 12 C -0.109 4.109 13 H 0.074 0.926 14 C -0.139 4.139 15 C -0.088 4.088 16 C 0.150 3.850 17 C -0.120 4.120 18 C 0.147 3.853 19 N -0.609 5.609 20 C -0.262 4.262 21 H 0.062 0.938 22 C -0.044 4.044 23 N -0.932 5.932 24 Si 0.962 3.038 25 H -0.285 1.285 26 H -0.293 1.293 27 H -0.273 1.273 28 C 0.184 3.816 29 C -0.138 4.138 30 H 0.245 0.755 31 H 0.104 0.896 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.035 0.965 37 H 0.058 0.942 38 H 0.074 0.926 39 H 0.062 0.938 40 H 0.053 0.947 41 H 0.047 0.953 42 H 0.086 0.914 43 H 0.055 0.945 44 H 0.105 0.895 45 H 0.053 0.947 46 H 0.071 0.929 47 H 0.024 0.976 48 H 0.054 0.946 49 H 0.250 0.750 50 H 0.007 0.993 51 H 0.055 0.945 52 H 0.067 0.933 53 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.649 10.166 13.092 18.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.227 4.227 3 C 0.098 3.902 4 N -0.329 5.329 5 C 0.315 3.685 6 O -0.442 6.442 7 C -0.131 4.131 8 H 0.120 0.880 9 C -0.152 4.152 10 C -0.154 4.154 11 C -0.144 4.144 12 C -0.128 4.128 13 H 0.092 0.908 14 C -0.196 4.196 15 C -0.126 4.126 16 C 0.047 3.953 17 C -0.160 4.160 18 C 0.020 3.980 19 N -0.332 5.332 20 C -0.392 4.392 21 H 0.080 0.920 22 C -0.239 4.239 23 N -0.577 5.577 24 Si 0.791 3.209 25 H -0.212 1.212 26 H -0.220 1.220 27 H -0.198 1.198 28 C 0.058 3.942 29 C -0.178 4.178 30 H 0.261 0.739 31 H 0.122 0.878 32 H 0.114 0.886 33 H 0.112 0.888 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.054 0.946 37 H 0.077 0.923 38 H 0.092 0.908 39 H 0.081 0.919 40 H 0.072 0.928 41 H 0.066 0.934 42 H 0.104 0.896 43 H 0.073 0.927 44 H 0.122 0.878 45 H 0.072 0.928 46 H 0.089 0.911 47 H 0.042 0.958 48 H 0.072 0.928 49 H 0.059 0.941 50 H 0.025 0.975 51 H 0.073 0.927 52 H 0.085 0.915 53 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.580 10.124 13.644 19.033 hybrid contribution 0.289 -1.203 -0.792 1.469 sum -8.291 8.921 12.852 17.706 Atomic orbital electron populations 1.25622 0.96667 0.98134 1.00066 1.23781 0.95431 1.02260 1.01226 1.18177 0.84031 0.87757 1.00218 1.48218 1.64260 1.09775 1.10619 1.21073 0.75353 0.85758 0.86321 1.90557 1.51858 1.85579 1.16191 1.21442 1.01143 0.91847 0.98633 0.88033 1.21709 0.93728 1.02997 0.96775 1.21491 0.97350 0.98714 0.97836 1.21557 0.98238 0.98445 0.96201 1.21414 0.95050 1.00131 0.96179 0.90808 1.21747 1.01248 0.98576 0.98059 1.21374 0.97798 0.97593 0.95808 1.21272 0.94496 1.01144 0.78365 1.22158 0.96970 1.01003 0.95858 1.20990 0.88621 0.94638 0.93703 1.44256 1.08672 1.40341 1.39950 1.19420 0.96957 1.09333 1.13516 0.92029 1.25812 0.97825 1.00803 0.99502 1.70108 1.04749 1.36473 1.46396 0.85359 0.76563 0.80100 0.78894 1.21213 1.21983 1.19762 1.20515 0.89796 0.97525 0.86411 1.22431 0.97329 0.99497 0.98498 0.73910 0.87809 0.88614 0.88843 0.91306 0.90768 0.94572 0.92286 0.90753 0.91856 0.92834 0.93416 0.89580 0.92669 0.87773 0.92794 0.91071 0.95795 0.92774 0.94082 0.97529 0.92672 0.91463 0.92738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.46 19.25 74.32 1.43 -3.03 16 2 C -0.23 -6.26 12.62 31.13 0.39 -5.87 16 3 C 0.22 6.10 5.07 84.57 0.43 6.52 16 4 N -0.60 -16.68 2.36 -808.18 -1.91 -18.59 16 5 C 0.52 14.82 5.48 87.65 0.48 15.30 16 6 O -0.56 -18.66 13.11 -3.02 -0.04 -18.70 16 7 C -0.11 -2.51 2.15 -11.54 -0.02 -2.54 16 8 H 0.10 2.23 7.34 -2.38 -0.02 2.21 16 9 C -0.11 -2.36 5.04 30.59 0.15 -2.21 16 10 C -0.12 -2.42 5.70 30.59 0.17 -2.25 16 11 C -0.11 -2.02 5.20 30.60 0.16 -1.86 16 12 C -0.11 -2.38 2.43 -10.79 -0.03 -2.40 16 13 H 0.07 2.12 5.30 -2.39 -0.01 2.11 16 14 C -0.14 -2.52 9.19 71.98 0.66 -1.86 16 15 C -0.09 -1.85 4.41 30.59 0.13 -1.72 16 16 C 0.15 4.40 1.53 45.02 0.07 4.47 16 17 C -0.12 -3.73 4.39 30.67 0.13 -3.59 16 18 C 0.15 5.57 6.52 86.36 0.56 6.13 16 19 N -0.61 -28.57 2.98 -699.10 -2.09 -30.66 16 20 C -0.26 -13.80 9.57 84.03 0.80 -13.00 16 21 H 0.06 3.20 7.85 -2.91 -0.02 3.18 16 22 C -0.04 -2.34 5.03 84.86 0.43 -1.92 16 23 N -0.93 -52.81 11.12 21.65 0.24 -52.57 16 24 Si 0.96 43.62 29.57 68.60 2.03 45.65 16 25 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 26 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 27 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 28 C 0.18 8.18 5.25 86.36 0.45 8.63 16 29 C -0.14 -4.72 5.41 30.67 0.17 -4.55 16 30 H 0.24 3.81 7.80 -4.41 -0.03 3.78 16 31 H 0.10 2.81 6.56 -2.38 -0.02 2.79 16 32 H 0.10 2.67 7.53 -2.39 -0.02 2.65 16 33 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.07 1.56 4.93 -2.38 -0.01 1.54 16 35 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 36 H 0.04 0.93 7.22 -2.39 -0.02 0.92 16 37 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.05 1.26 8.14 -2.39 -0.02 1.25 16 44 H 0.10 2.92 4.36 -2.39 -0.01 2.91 16 45 H 0.05 1.80 7.15 -2.38 -0.02 1.79 16 46 H 0.07 1.99 7.66 -2.39 -0.02 1.98 16 47 H 0.02 0.90 8.14 -2.38 -0.02 0.88 16 48 H 0.05 2.06 7.93 -2.39 -0.02 2.04 16 49 H 0.25 13.81 8.31 -92.71 -0.77 13.04 16 50 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 51 H 0.05 2.85 6.15 -2.39 -0.01 2.84 16 52 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 53 H 0.05 1.93 6.97 -2.39 -0.02 1.91 16 Total: -1.00 -62.80 395.48 5.69 -57.11 By element: Atomic # 1 Polarization: 22.63 SS G_CDS: 0.87 Total: 23.50 kcal Atomic # 6 Polarization: -12.33 SS G_CDS: 6.58 Total: -5.74 kcal Atomic # 7 Polarization: -98.06 SS G_CDS: -3.75 Total: -101.81 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: -0.04 Total: -18.70 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Total: -62.80 5.69 -57.11 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699784758.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.797 kcal (2) G-P(sol) polarization free energy of solvation -62.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds