Wall clock time and date at job start Tue Mar 31 2020 16:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47180 * 2 1 4 4 C 1.53002 * 109.47558 * 239.99865 * 2 1 3 5 5 C 1.47197 * 109.47054 * 119.99955 * 2 1 3 6 6 C 2.64599 * 109.47057 * 119.99864 * 2 1 3 7 7 C 4.07803 * 109.46971 * 119.99810 * 2 1 3 8 8 O 1.21610 * 119.99967 * 8.73989 * 7 6 5 9 9 N 1.34771 * 119.99903 * 188.73824 * 7 6 5 10 10 C 1.46930 * 120.63306 * 6.11231 * 9 7 6 11 11 C 1.53188 * 108.77477 * 233.58710 * 10 9 7 12 12 C 1.53036 * 109.31561 * 305.36105 * 11 10 9 13 13 C 1.53039 * 109.53803 * 61.36703 * 12 11 10 14 14 C 1.46923 * 120.63241 * 186.08916 * 9 7 6 15 15 H 1.08999 * 109.58619 * 246.34457 * 14 9 7 16 16 C 1.53005 * 109.58687 * 6.62356 * 14 9 7 17 17 H 1.08997 * 110.88742 * 304.40044 * 16 14 9 18 18 C 1.55161 * 111.00602 * 180.51635 * 16 14 9 19 19 C 1.54325 * 102.94077 * 206.42650 * 18 16 14 20 20 N 1.47015 * 107.27248 * 22.19481 * 19 18 16 21 21 C 1.36936 * 125.65092 * 181.02195 * 20 19 18 22 22 H 1.07992 * 120.00421 * 180.02562 * 21 20 19 23 23 C 1.38814 * 119.99621 * 359.75176 * 21 20 19 24 24 N 1.31619 * 119.99946 * 0.27210 * 23 21 20 25 25 Si 1.86799 * 119.99839 * 180.27608 * 23 21 20 26 26 H 1.48499 * 109.47193 * 359.97438 * 25 23 21 27 27 H 1.48508 * 109.46997 * 119.99969 * 25 23 21 28 28 H 1.48500 * 109.46859 * 239.99323 * 25 23 21 29 29 C 1.47431 * 108.70362 * 1.28579 * 20 19 18 30 30 H 1.08994 * 109.47572 * 300.00170 * 1 2 3 31 31 H 1.09005 * 109.46978 * 60.00595 * 1 2 3 32 32 H 1.08996 * 109.47430 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.46926 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47147 * 299.99664 * 3 2 1 35 35 H 1.09000 * 109.47268 * 59.99787 * 3 2 1 36 36 H 1.09006 * 109.46752 * 300.00102 * 4 2 1 37 37 H 1.09001 * 109.47055 * 60.00160 * 4 2 1 38 38 H 1.08994 * 109.47248 * 180.02562 * 4 2 1 39 39 H 1.09005 * 109.58455 * 353.36861 * 10 9 7 40 40 H 1.09000 * 109.58597 * 113.79851 * 10 9 7 41 41 H 1.09003 * 109.50127 * 65.31462 * 11 10 9 42 42 H 1.09005 * 109.49673 * 185.37831 * 11 10 9 43 43 H 1.08995 * 109.46408 * 181.38847 * 12 11 10 44 44 H 1.08997 * 109.46010 * 301.36332 * 12 11 10 45 45 H 1.08998 * 109.50061 * 178.68602 * 13 12 11 46 46 H 1.09000 * 109.50122 * 58.58394 * 13 12 11 47 47 H 1.09001 * 110.71489 * 88.06156 * 18 16 14 48 48 H 1.09003 * 110.71974 * 324.79305 * 18 16 14 49 49 H 1.08998 * 109.88149 * 262.77474 * 19 18 16 50 50 H 1.08995 * 110.01014 * 141.68490 * 19 18 16 51 51 H 0.97005 * 120.00212 * 180.02562 * 24 23 21 52 52 H 1.08996 * 110.36683 * 94.48518 * 29 20 19 53 53 H 1.09001 * 110.36614 * 216.80266 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0206 -0.6939 1.2019 6 6 2.4119 -1.2473 2.1605 7 6 2.8892 -1.9223 3.3298 8 8 2.3173 -2.9166 3.7339 9 7 3.9721 -1.4557 3.9824 10 6 4.5937 -0.1841 3.5879 11 6 6.0851 -0.4228 3.3322 12 6 6.7128 -1.0725 4.5675 13 6 6.0454 -2.4245 4.8296 14 6 4.5534 -2.2086 5.1021 15 1 4.4265 -1.6450 6.0264 16 6 3.8535 -3.5634 5.2275 17 1 2.7761 -3.4360 5.3322 18 6 4.4343 -4.3821 6.4107 19 6 4.1633 -5.8412 5.9873 20 7 4.0060 -5.8496 4.5256 21 6 3.7335 -6.9507 3.7585 22 1 3.6369 -6.8522 2.6875 23 6 3.5872 -8.1946 4.3571 24 7 3.7051 -8.3147 5.6625 25 14 3.2232 -9.6980 3.3099 26 1 3.1390 -9.2981 1.8822 27 1 4.3096 -10.6958 3.4818 28 1 1.9312 -10.2951 3.7334 29 6 4.1966 -4.4772 4.0218 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0276 -0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 1.6767 -1.7490 -1.2492 37 1 1.6768 -0.2074 -2.1392 38 1 3.1300 -0.7216 -1.2489 39 1 4.1217 0.1864 2.6779 40 1 4.4723 0.5457 4.3883 41 1 6.2060 -1.0826 2.4730 42 1 6.5767 0.5292 3.1319 43 1 7.7791 -1.2209 4.3975 44 1 6.5696 -0.4236 5.4314 45 1 6.5087 -2.8973 5.6955 46 1 6.1665 -3.0655 3.9563 47 1 3.9107 -4.1456 7.3370 48 1 5.5045 -4.2032 6.5149 49 1 3.2497 -6.2009 6.4606 50 1 5.0029 -6.4747 6.2735 51 1 3.6033 -9.1839 6.0808 52 1 5.2305 -4.3273 3.7112 53 1 3.5180 -4.2802 3.1918 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716706465.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:58:10 Heat of formation + Delta-G solvation = 36.565593 kcal Electronic energy + Delta-G solvation = -30148.883979 eV Core-core repulsion = 26408.419427 eV Total energy + Delta-G solvation = -3740.464552 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 332.221 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.96714 -39.00360 -38.42340 -38.23808 -35.05919 -34.04343 -33.12682 -32.38016 -30.73227 -28.79625 -28.22872 -28.17310 -27.14972 -26.05909 -24.93513 -23.75627 -22.18004 -21.94065 -21.27871 -20.31953 -18.97232 -18.41243 -17.21685 -16.93441 -16.75737 -16.66340 -16.28335 -15.73715 -15.29980 -15.27756 -15.22728 -15.07719 -14.87931 -14.57328 -14.21960 -13.93571 -13.84784 -13.52277 -13.32422 -13.29753 -13.10899 -12.86652 -12.77347 -12.67701 -12.62287 -12.40139 -12.28236 -12.25036 -12.09332 -12.00409 -11.92579 -11.75637 -11.63171 -11.49830 -11.44804 -11.27525 -11.19433 -11.14903 -10.72345 -10.16464 -9.59872 -8.81398 -7.86067 -5.19964 0.54058 1.26261 1.38319 1.41714 1.51932 1.90160 2.47086 2.49277 2.96235 3.30078 3.57471 3.81152 3.84849 3.93108 3.96086 3.97000 4.00341 4.02969 4.13739 4.26010 4.30134 4.33280 4.35243 4.53495 4.61689 4.72159 4.74102 4.75266 4.76683 4.83277 4.84613 4.95366 4.95856 4.96764 5.03011 5.05527 5.10239 5.14459 5.19018 5.21123 5.25045 5.27132 5.33821 5.38749 5.39233 5.47918 5.54187 5.69144 5.71991 5.82087 6.20020 6.20610 6.33081 7.09708 7.11722 7.79224 8.45546 9.24782 Molecular weight = 332.22amu Principal moments of inertia in cm(-1) A = 0.010329 B = 0.003785 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2710.078989 B = 7396.467540 C = 9301.921625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.033 3.967 3 C -0.136 4.136 4 C -0.142 4.142 5 C -0.055 4.055 6 C -0.258 4.258 7 C 0.611 3.389 8 O -0.541 6.541 9 N -0.593 5.593 10 C 0.105 3.895 11 C -0.130 4.130 12 C -0.112 4.112 13 C -0.138 4.138 14 C 0.168 3.832 15 H 0.100 0.900 16 C -0.092 4.092 17 H 0.088 0.912 18 C -0.131 4.131 19 C 0.189 3.811 20 N -0.627 5.627 21 C -0.241 4.241 22 H 0.068 0.932 23 C -0.069 4.069 24 N -0.951 5.951 25 Si 0.980 3.020 26 H -0.270 1.270 27 H -0.284 1.284 28 H -0.290 1.290 29 C 0.147 3.853 30 H 0.059 0.941 31 H 0.097 0.903 32 H 0.045 0.955 33 H 0.064 0.936 34 H 0.093 0.907 35 H 0.062 0.938 36 H 0.044 0.956 37 H 0.098 0.902 38 H 0.060 0.940 39 H 0.086 0.914 40 H 0.096 0.904 41 H 0.049 0.951 42 H 0.107 0.893 43 H 0.077 0.923 44 H 0.084 0.916 45 H 0.083 0.917 46 H 0.051 0.949 47 H 0.077 0.923 48 H 0.081 0.919 49 H 0.000 1.000 50 H 0.007 0.993 51 H 0.247 0.753 52 H 0.019 0.981 53 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.653 28.578 -9.305 30.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.033 3.967 3 C -0.193 4.193 4 C -0.199 4.199 5 C -0.058 4.058 6 C -0.261 4.261 7 C 0.401 3.599 8 O -0.421 6.421 9 N -0.325 5.325 10 C -0.016 4.016 11 C -0.168 4.168 12 C -0.149 4.149 13 C -0.176 4.176 14 C 0.066 3.934 15 H 0.118 0.882 16 C -0.111 4.111 17 H 0.106 0.894 18 C -0.170 4.170 19 C 0.064 3.936 20 N -0.353 5.353 21 C -0.371 4.371 22 H 0.086 0.914 23 C -0.261 4.261 24 N -0.601 5.601 25 Si 0.808 3.192 26 H -0.195 1.195 27 H -0.211 1.211 28 H -0.216 1.216 29 C 0.023 3.977 30 H 0.078 0.922 31 H 0.116 0.884 32 H 0.064 0.936 33 H 0.084 0.916 34 H 0.112 0.888 35 H 0.081 0.919 36 H 0.064 0.936 37 H 0.117 0.883 38 H 0.079 0.921 39 H 0.104 0.896 40 H 0.114 0.886 41 H 0.068 0.932 42 H 0.125 0.875 43 H 0.095 0.905 44 H 0.103 0.897 45 H 0.102 0.898 46 H 0.069 0.931 47 H 0.096 0.904 48 H 0.100 0.900 49 H 0.018 0.982 50 H 0.026 0.974 51 H 0.056 0.944 52 H 0.036 0.964 53 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 2.351 27.868 -9.058 29.397 hybrid contribution -0.454 -1.912 -0.171 1.973 sum 1.897 25.956 -9.229 27.613 Atomic orbital electron populations 1.21938 0.91684 1.02377 1.03955 1.18271 0.96513 0.95490 0.86455 1.21900 1.01880 0.91497 1.03983 1.21934 1.01704 1.00144 0.96118 1.23368 0.94753 0.94532 0.93142 1.20875 1.04945 1.02408 0.97912 1.15238 0.81157 0.82405 0.81139 1.90941 1.58676 1.26137 1.66366 1.48013 1.27777 1.23675 1.33069 1.22037 0.93993 0.83633 1.01957 1.21923 0.94190 1.02524 0.98180 1.21516 0.99899 0.94819 0.98679 1.22145 0.93603 0.99208 1.02606 1.21235 0.92966 0.90612 0.88596 0.88187 1.22794 1.00866 0.92855 0.94565 0.89410 1.22951 1.01228 0.94841 0.97960 1.20841 0.96703 0.92685 0.83385 1.44800 1.83171 1.03785 1.03545 1.19428 1.40492 0.86692 0.90445 0.91366 1.25670 1.02752 1.00368 0.97354 1.70220 1.57680 1.22880 1.09305 0.84985 0.77160 0.79088 0.77972 1.19486 1.21058 1.21649 1.22068 0.95761 0.83929 0.95981 0.92162 0.88383 0.93550 0.91648 0.88789 0.91918 0.93641 0.88326 0.92060 0.89564 0.88579 0.93228 0.87484 0.90475 0.89704 0.89847 0.93068 0.90444 0.90014 0.98212 0.97449 0.94403 0.96392 0.95606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 8.43 71.98 0.61 -1.38 16 2 C 0.03 0.50 0.95 -53.99 -0.05 0.45 16 3 C -0.14 -1.28 8.43 71.98 0.61 -0.67 16 4 C -0.14 -1.99 8.43 71.98 0.61 -1.38 16 5 C -0.06 -1.36 11.71 31.12 0.36 -0.99 16 6 C -0.26 -7.96 11.58 30.02 0.35 -7.61 16 7 C 0.61 21.92 6.71 85.49 0.57 22.49 16 8 O -0.54 -25.07 10.75 -4.06 -0.04 -25.11 16 9 N -0.59 -16.58 2.96 -803.90 -2.38 -18.96 16 10 C 0.10 1.86 6.34 86.36 0.55 2.41 16 11 C -0.13 -1.97 6.08 30.67 0.19 -1.79 16 12 C -0.11 -1.82 5.88 30.62 0.18 -1.64 16 13 C -0.14 -3.49 4.72 30.67 0.14 -3.35 16 14 C 0.17 4.89 2.80 44.98 0.13 5.01 16 15 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 16 C -0.09 -3.75 2.13 -9.32 -0.02 -3.77 16 17 H 0.09 4.18 5.74 -17.52 -0.10 4.08 16 18 C -0.13 -5.40 6.32 31.78 0.20 -5.20 16 19 C 0.19 10.62 5.37 86.73 0.47 11.08 16 20 N -0.63 -37.63 3.39 -691.57 -2.35 -39.97 16 21 C -0.24 -15.53 10.28 84.03 0.86 -14.67 16 22 H 0.07 4.32 7.83 -2.91 -0.02 4.30 16 23 C -0.07 -4.35 5.49 84.86 0.47 -3.89 16 24 N -0.95 -62.40 10.31 21.65 0.22 -62.17 16 25 Si 0.98 50.29 29.55 68.60 2.03 52.32 16 26 H -0.27 -13.23 7.11 99.48 0.71 -12.53 16 27 H -0.28 -14.13 7.11 99.48 0.71 -13.42 16 28 H -0.29 -14.69 7.11 99.48 0.71 -13.98 16 29 C 0.15 7.34 5.67 86.93 0.49 7.84 16 30 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.10 0.80 8.14 -2.38 -0.02 0.78 16 32 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 34 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.04 0.81 8.14 -2.38 -0.02 0.79 16 37 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.09 1.47 6.31 -2.38 -0.02 1.45 16 40 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.11 0.96 8.14 -2.38 -0.02 0.94 16 43 H 0.08 1.12 8.14 -2.39 -0.02 1.11 16 44 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.08 2.06 6.48 -2.39 -0.02 2.04 16 46 H 0.05 1.62 5.67 -2.39 -0.01 1.61 16 47 H 0.08 2.85 8.14 -2.39 -0.02 2.83 16 48 H 0.08 2.92 6.10 -2.39 -0.01 2.90 16 49 H 0.00 -0.02 7.39 -2.39 -0.02 -0.04 16 50 H 0.01 0.45 7.49 -2.39 -0.02 0.43 16 51 H 0.25 15.51 8.31 -92.70 -0.77 14.74 16 52 H 0.02 0.89 5.38 -2.39 -0.01 0.88 16 53 H 0.03 1.42 5.64 -2.39 -0.01 1.41 16 Total: -1.00 -85.16 398.23 4.99 -80.17 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: 0.80 Total: 10.79 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: 6.71 Total: 2.94 kcal Atomic # 7 Polarization: -116.61 SS G_CDS: -4.50 Total: -121.11 kcal Atomic # 8 Polarization: -25.07 SS G_CDS: -0.04 Total: -25.11 kcal Atomic # 14 Polarization: 50.29 SS G_CDS: 2.03 Total: 52.32 kcal Total: -85.16 4.99 -80.17 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716706465.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.734 kcal (2) G-P(sol) polarization free energy of solvation -85.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds