Wall clock time and date at job start Tue Mar 31 2020 16:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 109.47166 * 2 1 4 4 C 1.38260 * 119.99559 * 264.99427 * 3 2 1 5 5 C 1.38212 * 119.99650 * 179.71963 * 4 3 2 6 6 C 1.38255 * 120.00300 * 0.28729 * 5 4 3 7 7 C 1.38216 * 119.99744 * 359.97134 * 6 5 4 8 8 C 1.38208 * 120.00333 * 85.19279 * 3 2 1 9 9 C 1.50698 * 120.00186 * 0.03695 * 8 3 2 10 10 C 1.50700 * 109.47054 * 85.17110 * 9 8 3 11 11 O 1.21283 * 119.99867 * 0.02562 * 10 9 8 12 12 N 1.34772 * 120.00248 * 180.02562 * 10 9 8 13 13 C 1.46498 * 120.00334 * 180.02562 * 12 10 9 14 14 H 1.08993 * 109.47253 * 34.99920 * 13 12 10 15 15 C 1.52999 * 109.47549 * 154.99967 * 13 12 10 16 16 N 1.46497 * 109.47127 * 305.00120 * 15 13 12 17 17 C 1.36941 * 120.00112 * 179.97438 * 16 15 13 18 18 H 1.07994 * 119.99550 * 359.97438 * 17 16 15 19 19 C 1.38806 * 119.99926 * 179.97438 * 17 16 15 20 20 N 1.31619 * 120.00023 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99965 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46833 * 60.00193 * 21 19 17 23 23 H 1.48500 * 109.47263 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47226 * 300.00036 * 21 19 17 25 25 C 1.53006 * 109.46794 * 274.99798 * 13 12 10 26 26 C 1.52998 * 109.47047 * 60.00170 * 25 13 12 27 27 C 1.52998 * 109.46877 * 179.97438 * 25 13 12 28 28 C 1.52995 * 109.47186 * 299.99908 * 25 13 12 29 29 H 1.09001 * 109.47000 * 300.00106 * 1 2 3 30 30 H 1.09000 * 109.47225 * 60.00352 * 1 2 3 31 31 H 1.09003 * 109.47047 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47450 * 239.99707 * 2 1 3 33 33 H 1.09000 * 109.47225 * 119.99648 * 2 1 3 34 34 H 1.08002 * 120.00476 * 0.02562 * 4 3 2 35 35 H 1.07999 * 119.99941 * 180.25946 * 5 4 3 36 36 H 1.08005 * 120.00230 * 179.97438 * 6 5 4 37 37 H 1.08002 * 119.99715 * 179.97438 * 7 6 5 38 38 H 1.08999 * 109.47771 * 205.17511 * 9 8 3 39 39 H 1.09007 * 109.47111 * 325.17972 * 9 8 3 40 40 H 0.97005 * 120.00026 * 0.02562 * 12 10 9 41 41 H 1.09011 * 109.47052 * 64.99764 * 15 13 12 42 42 H 1.09001 * 109.47294 * 184.99465 * 15 13 12 43 43 H 0.97001 * 120.00022 * 359.97438 * 16 15 13 44 44 H 0.97003 * 119.99973 * 179.97438 * 20 19 17 45 45 H 1.09001 * 109.47327 * 59.99516 * 26 25 13 46 46 H 1.09000 * 109.47177 * 179.97438 * 26 25 13 47 47 H 1.09003 * 109.46802 * 299.99781 * 26 25 13 48 48 H 1.09000 * 109.47168 * 60.00672 * 27 25 13 49 49 H 1.09004 * 109.47160 * 179.97438 * 27 25 13 50 50 H 1.08993 * 109.47591 * 300.00379 * 27 25 13 51 51 H 1.08994 * 109.47101 * 60.00497 * 28 25 13 52 52 H 1.09008 * 109.46775 * 179.97438 * 28 25 13 53 53 H 1.09000 * 109.47311 * 299.99605 * 28 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3612 2.0376 -1.1929 5 6 2.8164 3.3426 -1.1934 6 6 2.9485 4.0292 -0.0007 7 6 2.6248 3.4108 1.1922 8 6 2.1681 2.1058 1.1927 9 6 1.8147 1.4317 2.4933 10 6 2.9975 0.6381 2.9854 11 8 4.0263 0.6220 2.3435 12 7 2.9120 -0.0536 4.1389 13 6 4.0621 -0.8247 4.6177 14 1 4.9829 -0.3014 4.3602 15 6 3.9732 -0.9831 6.1368 16 7 3.8554 0.3377 6.7595 17 6 3.7605 0.4466 8.1213 18 1 3.7721 -0.4411 8.7361 19 6 3.6495 1.6982 8.7113 20 7 3.6348 2.7801 7.9619 21 14 3.5193 1.8468 10.5688 22 1 4.7292 1.2595 11.1984 23 1 3.4111 3.2794 10.9444 24 1 2.3134 1.1196 11.0403 25 6 4.0594 -2.2061 3.9598 26 6 4.1483 -2.0476 2.4406 27 6 5.2608 -3.0111 4.4592 28 6 2.7668 -2.9405 4.3212 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.2578 1.5015 -2.1247 35 1 3.0694 3.8259 -2.1255 36 1 3.3047 5.0489 -0.0011 37 1 2.7284 3.9470 2.1240 38 1 1.5501 2.1866 3.2337 39 1 0.9680 0.7630 2.3376 40 1 2.0890 -0.0410 4.6522 41 1 3.0987 -1.5830 6.3890 42 1 4.8719 -1.4790 6.5036 43 1 3.8447 1.1350 6.2072 44 1 3.5569 3.6546 8.3742 45 1 5.0691 -1.5243 2.1832 46 1 4.1469 -3.0317 1.9720 47 1 3.2926 -1.4739 2.0845 48 1 5.1978 -3.1240 5.5415 49 1 5.2586 -3.9954 3.9909 50 1 6.1814 -2.4877 4.2015 51 1 1.9112 -2.3669 3.9650 52 1 2.7648 -3.9245 3.8521 53 1 2.7035 -3.0535 5.4035 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725742749.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:46:17 Heat of formation + Delta-G solvation = -40.768339 kcal Electronic energy + Delta-G solvation = -30162.079032 eV Core-core repulsion = 26418.261029 eV Total energy + Delta-G solvation = -3743.818003 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 332.221 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.53991 -40.28482 -38.49803 -36.18384 -35.17514 -34.54398 -33.44197 -32.88579 -30.38842 -29.57316 -28.55670 -28.12821 -27.50284 -25.59607 -24.68816 -23.36009 -22.80605 -21.81387 -21.00104 -19.82345 -19.08144 -17.93763 -17.49375 -17.20490 -16.94360 -16.57687 -16.18128 -15.91265 -15.48534 -15.24655 -14.93191 -14.81818 -14.63939 -14.56608 -14.32318 -14.21557 -14.04082 -13.84474 -13.54620 -13.15881 -13.01687 -12.95915 -12.91601 -12.80903 -12.71287 -12.61202 -12.48772 -12.34069 -12.19469 -12.11950 -12.00905 -11.75499 -11.68881 -11.59086 -11.48589 -11.25261 -10.94465 -10.73153 -9.81007 -9.66720 -9.44477 -8.97777 -7.93069 -5.22122 0.46141 0.53534 1.48467 1.50804 1.56832 1.78117 2.34132 2.56933 2.94205 3.41169 3.67489 3.71501 3.83497 3.88981 4.01905 4.02945 4.13534 4.16334 4.28188 4.31928 4.35463 4.37733 4.48245 4.53713 4.56297 4.64914 4.67914 4.74587 4.77383 4.84103 4.86747 4.92980 4.97734 5.05076 5.07735 5.08956 5.13801 5.17847 5.20817 5.24431 5.28515 5.33818 5.42017 5.49963 5.51847 5.59886 5.62478 5.64937 5.71268 5.79052 6.17328 6.27618 6.69443 7.35013 7.40135 8.09323 8.33206 9.29739 Molecular weight = 332.22amu Principal moments of inertia in cm(-1) A = 0.010898 B = 0.003663 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2568.665597 B = 7642.382237 C = 9313.673523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.085 4.085 3 C -0.075 4.075 4 C -0.128 4.128 5 C -0.124 4.124 6 C -0.136 4.136 7 C -0.128 4.128 8 C -0.073 4.073 9 C -0.104 4.104 10 C 0.517 3.483 11 O -0.565 6.565 12 N -0.706 5.706 13 C 0.161 3.839 14 H 0.049 0.951 15 C 0.145 3.855 16 N -0.742 5.742 17 C -0.244 4.244 18 H 0.078 0.922 19 C -0.071 4.071 20 N -0.968 5.968 21 Si 0.971 3.029 22 H -0.281 1.281 23 H -0.299 1.299 24 H -0.275 1.275 25 C -0.070 4.070 26 C -0.120 4.120 27 C -0.140 4.140 28 C -0.136 4.136 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.060 0.940 34 H 0.140 0.860 35 H 0.144 0.856 36 H 0.134 0.866 37 H 0.113 0.887 38 H 0.103 0.897 39 H 0.124 0.876 40 H 0.407 0.593 41 H 0.045 0.955 42 H 0.033 0.967 43 H 0.373 0.627 44 H 0.250 0.750 45 H 0.035 0.965 46 H 0.061 0.939 47 H 0.048 0.952 48 H 0.059 0.941 49 H 0.074 0.926 50 H 0.043 0.957 51 H 0.055 0.945 52 H 0.069 0.931 53 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.077 -8.215 -18.462 21.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.122 4.122 3 C -0.075 4.075 4 C -0.146 4.146 5 C -0.142 4.142 6 C -0.154 4.154 7 C -0.146 4.146 8 C -0.073 4.073 9 C -0.143 4.143 10 C 0.305 3.695 11 O -0.444 6.444 12 N -0.357 5.357 13 C 0.056 3.944 14 H 0.067 0.933 15 C 0.018 3.982 16 N -0.385 5.385 17 C -0.376 4.376 18 H 0.095 0.905 19 C -0.264 4.264 20 N -0.618 5.618 21 Si 0.800 3.200 22 H -0.208 1.208 23 H -0.225 1.225 24 H -0.201 1.201 25 C -0.071 4.071 26 C -0.177 4.177 27 C -0.197 4.197 28 C -0.193 4.193 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.096 0.904 33 H 0.079 0.921 34 H 0.158 0.842 35 H 0.162 0.838 36 H 0.152 0.848 37 H 0.131 0.869 38 H 0.121 0.879 39 H 0.142 0.858 40 H 0.242 0.758 41 H 0.063 0.937 42 H 0.051 0.949 43 H 0.205 0.795 44 H 0.058 0.942 45 H 0.054 0.946 46 H 0.080 0.920 47 H 0.067 0.933 48 H 0.078 0.922 49 H 0.093 0.907 50 H 0.063 0.937 51 H 0.074 0.926 52 H 0.087 0.913 53 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.353 -8.308 -18.729 21.451 hybrid contribution 0.062 1.089 1.395 1.771 sum -6.291 -7.219 -17.334 19.803 Atomic orbital electron populations 1.21748 0.93304 1.02628 1.02316 1.20580 0.97085 0.91747 1.02801 1.19921 0.98481 0.96555 0.92553 1.21279 0.99940 0.95511 0.97856 1.21410 0.99294 0.94913 0.98564 1.21323 1.00693 1.00850 0.92499 1.21213 0.99423 0.95192 0.98770 1.19255 1.00288 0.94058 0.93699 1.20762 0.97253 1.00379 0.95923 1.20688 0.89610 0.78717 0.80514 1.90687 1.32390 1.63948 1.57360 1.45894 1.16826 1.49491 1.23489 1.21014 0.88692 0.91866 0.92871 0.93265 1.21218 0.99200 0.87745 0.90017 1.42522 1.88752 1.03456 1.03761 1.19583 1.40840 0.92618 0.84539 0.90451 1.25506 1.03672 0.95265 1.01916 1.69820 1.59129 0.97345 1.35522 0.85255 0.78174 0.76002 0.80562 1.20760 1.22496 1.20083 1.20845 0.97319 0.93318 0.95648 1.21788 1.01206 1.00567 0.94116 1.21884 0.96402 0.99985 1.01478 1.21861 0.95635 1.00104 1.01695 0.92679 0.92051 0.91012 0.90385 0.92122 0.84199 0.83848 0.84802 0.86870 0.87894 0.85834 0.75796 0.93749 0.94950 0.79472 0.94170 0.94631 0.92050 0.93299 0.92197 0.90681 0.93747 0.92555 0.91251 0.92312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 9.72 71.98 0.70 -1.50 16 2 C -0.08 -1.68 5.38 29.85 0.16 -1.52 16 3 C -0.08 -1.82 5.13 -19.87 -0.10 -1.92 16 4 C -0.13 -2.79 9.68 22.27 0.22 -2.58 16 5 C -0.12 -2.67 10.05 22.27 0.22 -2.44 16 6 C -0.14 -3.32 10.05 22.27 0.22 -3.09 16 7 C -0.13 -3.63 9.68 22.27 0.22 -3.41 16 8 C -0.07 -1.99 4.37 -19.87 -0.09 -2.08 16 9 C -0.10 -2.71 5.16 29.10 0.15 -2.56 16 10 C 0.52 16.54 5.41 87.66 0.47 17.02 16 11 O -0.56 -21.69 13.16 -3.04 -0.04 -21.73 16 12 N -0.71 -21.98 3.64 -442.54 -1.61 -23.60 16 13 C 0.16 5.37 1.69 44.99 0.08 5.45 16 14 H 0.05 2.00 7.58 -2.39 -0.02 1.99 16 15 C 0.14 5.49 5.10 86.38 0.44 5.93 16 16 N -0.74 -36.54 5.43 -343.45 -1.87 -38.41 16 17 C -0.24 -13.25 9.99 84.03 0.84 -12.41 16 18 H 0.08 4.00 7.83 -2.91 -0.02 3.97 16 19 C -0.07 -4.01 5.50 84.86 0.47 -3.55 16 20 N -0.97 -58.62 13.06 21.65 0.28 -58.34 16 21 Si 0.97 45.47 29.55 68.60 2.03 47.49 16 22 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 23 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 24 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 25 C -0.07 -1.83 0.62 -52.18 -0.03 -1.86 16 26 C -0.12 -3.21 7.00 71.98 0.50 -2.71 16 27 C -0.14 -3.41 8.12 71.98 0.58 -2.83 16 28 C -0.14 -2.98 7.97 71.98 0.57 -2.40 16 29 H 0.05 0.87 6.83 -2.39 -0.02 0.85 16 30 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.07 0.90 8.14 -2.39 -0.02 0.89 16 32 H 0.08 1.39 8.05 -2.38 -0.02 1.37 16 33 H 0.06 1.36 5.20 -2.39 -0.01 1.35 16 34 H 0.14 2.31 8.06 -2.91 -0.02 2.29 16 35 H 0.14 2.23 8.06 -2.91 -0.02 2.21 16 36 H 0.13 2.71 8.06 -2.91 -0.02 2.69 16 37 H 0.11 3.26 8.06 -2.91 -0.02 3.24 16 38 H 0.10 2.68 8.05 -2.39 -0.02 2.66 16 39 H 0.12 2.54 5.63 -2.38 -0.01 2.52 16 40 H 0.41 11.92 8.60 -92.70 -0.80 11.12 16 41 H 0.04 1.58 6.17 -2.38 -0.01 1.56 16 42 H 0.03 1.26 6.71 -2.39 -0.02 1.24 16 43 H 0.37 20.05 7.33 -92.71 -0.68 19.37 16 44 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 45 H 0.03 1.13 7.53 -2.39 -0.02 1.11 16 46 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 47 H 0.05 1.36 4.56 -2.39 -0.01 1.35 16 48 H 0.06 1.48 6.54 -2.39 -0.02 1.47 16 49 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 50 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 51 H 0.06 1.20 7.60 -2.39 -0.02 1.18 16 52 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 53 H 0.06 1.34 6.32 -2.39 -0.02 1.32 16 Total: -1.00 -68.22 406.74 3.85 -64.36 By element: Atomic # 1 Polarization: 49.24 SS G_CDS: -0.57 Total: 48.68 kcal Atomic # 6 Polarization: -24.09 SS G_CDS: 5.63 Total: -18.47 kcal Atomic # 7 Polarization: -117.15 SS G_CDS: -3.19 Total: -120.34 kcal Atomic # 8 Polarization: -21.69 SS G_CDS: -0.04 Total: -21.73 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.49 kcal Total: -68.22 3.85 -64.36 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725742749.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.596 kcal (2) G-P(sol) polarization free energy of solvation -68.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds