Wall clock time and date at job start Tue Mar 31 2020 17:48:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47240 * 2 1 4 4 C 1.52996 * 109.47406 * 120.00737 * 2 1 3 5 5 C 1.50695 * 109.47437 * 64.99235 * 4 2 1 6 6 C 1.38243 * 119.99577 * 90.00395 * 5 4 2 7 7 C 1.38234 * 119.99697 * 179.97438 * 6 5 4 8 8 C 1.38231 * 120.00002 * 0.02562 * 7 6 5 9 9 C 1.50709 * 119.99770 * 179.97438 * 8 7 6 10 10 C 1.50703 * 109.47053 * 90.00226 * 9 8 7 11 11 O 1.21277 * 119.99605 * 0.02562 * 10 9 8 12 12 N 1.34773 * 119.99847 * 179.97438 * 10 9 8 13 13 C 1.46496 * 119.99909 * 180.02562 * 12 10 9 14 14 H 1.09001 * 109.47459 * 35.00135 * 13 12 10 15 15 C 1.53006 * 109.46995 * 275.00159 * 13 12 10 16 16 C 1.52997 * 109.47194 * 155.00140 * 13 12 10 17 17 C 1.53003 * 109.46992 * 294.99585 * 16 13 12 18 18 N 1.46505 * 109.47014 * 179.97438 * 17 16 13 19 19 C 1.36939 * 119.99698 * 180.02562 * 18 17 16 20 20 H 1.07994 * 120.00298 * 359.97438 * 19 18 17 21 21 C 1.38813 * 119.99600 * 180.02562 * 19 18 17 22 22 N 1.31618 * 120.00264 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 119.99751 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47317 * 90.00240 * 23 21 19 25 25 H 1.48504 * 109.47208 * 210.00171 * 23 21 19 26 26 H 1.48502 * 109.47413 * 329.99871 * 23 21 19 27 27 C 1.38234 * 120.00395 * 0.25346 * 8 7 6 28 28 C 1.38227 * 120.00365 * 270.02749 * 5 4 2 29 29 H 1.08999 * 109.46501 * 299.99779 * 1 2 3 30 30 H 1.08996 * 109.47030 * 59.99433 * 1 2 3 31 31 H 1.08990 * 109.47122 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.46962 * 240.00670 * 2 1 3 33 33 H 1.09008 * 109.47179 * 180.02562 * 3 2 1 34 34 H 1.08996 * 109.47572 * 300.00235 * 3 2 1 35 35 H 1.08999 * 109.47193 * 60.00644 * 3 2 1 36 36 H 1.09002 * 109.46459 * 304.99482 * 4 2 1 37 37 H 1.09001 * 109.47502 * 184.99897 * 4 2 1 38 38 H 1.08002 * 119.99955 * 0.02562 * 6 5 4 39 39 H 1.07996 * 119.99744 * 179.97438 * 7 6 5 40 40 H 1.08988 * 109.47232 * 330.00036 * 9 8 7 41 41 H 1.08997 * 109.46677 * 209.99944 * 9 8 7 42 42 H 0.97003 * 120.00265 * 359.97438 * 12 10 9 43 43 H 1.09001 * 109.47002 * 299.99701 * 15 13 12 44 44 H 1.08993 * 109.46955 * 60.00138 * 15 13 12 45 45 H 1.09000 * 109.47050 * 179.97438 * 15 13 12 46 46 H 1.09002 * 109.47223 * 54.99994 * 16 13 12 47 47 H 1.09006 * 109.47396 * 175.00204 * 16 13 12 48 48 H 1.09000 * 109.46966 * 300.00238 * 17 16 13 49 49 H 1.08998 * 109.46717 * 60.00358 * 17 16 13 50 50 H 0.97001 * 120.00131 * 0.02562 * 18 17 16 51 51 H 0.96998 * 120.00242 * 180.02562 * 22 21 19 52 52 H 1.07999 * 120.00665 * 179.72250 * 27 8 7 53 53 H 1.08006 * 120.00127 * 359.97438 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7214 1.2491 5 6 1.6413 -2.1734 1.1887 6 6 2.4814 -3.0967 0.5948 7 6 2.1159 -4.4287 0.5398 8 6 0.9102 -4.8373 1.0784 9 6 0.5115 -6.2894 1.0180 10 6 1.0138 -6.9999 2.2484 11 8 1.6340 -6.3873 3.0915 12 7 0.7729 -8.3157 2.4123 13 6 1.2607 -9.0063 3.6087 14 1 1.2136 -8.3307 4.4628 15 6 2.7087 -9.4485 3.3875 16 6 0.3885 -10.2335 3.8805 17 6 -1.0327 -9.7830 4.2245 18 7 -1.8680 -10.9582 4.4842 19 6 -3.1879 -10.8008 4.8135 20 1 -3.6129 -9.8103 4.8821 21 6 -3.9792 -11.9143 5.0600 22 7 -3.4609 -13.1213 4.9778 23 14 -5.7794 -11.6995 5.5099 24 1 -6.6019 -11.6974 4.2735 25 1 -6.2074 -12.8187 6.3872 26 1 -5.9603 -10.4117 6.2270 27 6 0.0675 -3.9131 1.6672 28 6 0.4354 -2.5819 1.7268 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 3.1301 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6768 1.9563 0.8900 36 1 1.6055 -0.2618 2.1368 37 1 3.1264 -0.6445 1.2950 38 1 3.4237 -2.7774 0.1744 39 1 2.7720 -5.1499 0.0755 40 1 0.9460 -6.7489 0.1303 41 1 -0.5748 -6.3663 0.9721 42 1 0.2759 -8.8055 1.7385 43 1 2.7558 -10.1242 2.5334 44 1 3.3300 -8.5742 3.1939 45 1 3.0718 -9.9619 4.2778 46 1 0.3645 -10.8660 2.9931 47 1 0.8036 -10.7963 4.7167 48 1 -1.0086 -9.1506 5.1119 49 1 -1.4477 -9.2203 3.3883 50 1 -1.4862 -11.8478 4.4228 51 1 -4.0140 -13.8994 5.1498 52 1 -0.8766 -4.2316 2.0839 53 1 -0.2210 -1.8606 2.1909 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732709760.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:36 Heat of formation + Delta-G solvation = -56.789082 kcal Electronic energy + Delta-G solvation = -27570.025380 eV Core-core repulsion = 23825.512665 eV Total energy + Delta-G solvation = -3744.512715 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 332.221 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.15532 -40.16088 -37.92814 -37.12638 -36.06250 -33.90107 -33.45777 -32.09672 -31.80165 -29.72451 -29.33782 -27.98370 -26.31594 -25.80405 -23.60826 -23.41476 -22.58573 -21.70989 -21.26555 -20.78683 -19.22254 -18.04452 -17.50252 -16.88258 -16.79620 -16.62961 -16.03586 -15.87783 -15.51388 -15.37119 -15.18900 -15.15184 -15.10834 -14.67111 -14.35212 -14.24682 -14.24147 -13.70696 -13.34693 -13.15042 -13.10930 -13.06105 -12.93981 -12.89309 -12.81923 -12.60333 -12.40018 -12.30643 -12.26387 -12.00378 -11.91959 -11.83501 -11.69347 -11.64175 -11.49645 -11.48557 -10.96429 -10.85516 -10.03069 -9.74698 -9.35814 -9.01682 -7.96975 -5.25984 0.43120 0.56282 1.46663 1.48081 1.56690 1.71970 2.28304 2.54536 2.92819 3.36584 3.62991 3.72150 3.88290 3.90229 4.04582 4.07840 4.10893 4.11468 4.18155 4.19026 4.35716 4.40716 4.42154 4.56427 4.59664 4.65766 4.66508 4.69755 4.76973 4.78932 4.83723 4.86886 4.88129 4.97250 5.00814 5.07407 5.08242 5.17466 5.23145 5.23587 5.26974 5.33617 5.35276 5.44220 5.47514 5.48533 5.55820 5.61783 5.71983 5.77801 6.16919 6.25567 6.63890 7.32131 7.33737 8.07342 8.31485 9.26209 Molecular weight = 332.22amu Principal moments of inertia in cm(-1) A = 0.015096 B = 0.001928 C = 0.001750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.298119 B =14516.402313 C =15992.203708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.088 4.088 3 C -0.145 4.145 4 C -0.074 4.074 5 C -0.086 4.086 6 C -0.127 4.127 7 C -0.115 4.115 8 C -0.082 4.082 9 C -0.099 4.099 10 C 0.514 3.486 11 O -0.579 6.579 12 N -0.715 5.715 13 C 0.152 3.848 14 H 0.063 0.937 15 C -0.152 4.152 16 C -0.118 4.118 17 C 0.154 3.846 18 N -0.745 5.745 19 C -0.249 4.249 20 H 0.071 0.929 21 C -0.073 4.073 22 N -0.967 5.967 23 Si 0.973 3.027 24 H -0.284 1.284 25 H -0.294 1.294 26 H -0.273 1.273 27 C -0.122 4.122 28 C -0.124 4.124 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.049 0.951 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.136 0.864 39 H 0.131 0.869 40 H 0.129 0.871 41 H 0.118 0.882 42 H 0.413 0.587 43 H 0.071 0.929 44 H 0.048 0.952 45 H 0.072 0.928 46 H 0.080 0.920 47 H 0.077 0.923 48 H 0.004 0.996 49 H 0.026 0.974 50 H 0.376 0.624 51 H 0.252 0.748 52 H 0.120 0.880 53 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.361 24.179 -14.537 31.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.106 4.106 3 C -0.203 4.203 4 C -0.111 4.111 5 C -0.086 4.086 6 C -0.145 4.145 7 C -0.133 4.133 8 C -0.082 4.082 9 C -0.138 4.138 10 C 0.301 3.699 11 O -0.459 6.459 12 N -0.367 5.367 13 C 0.047 3.953 14 H 0.082 0.918 15 C -0.210 4.210 16 C -0.156 4.156 17 C 0.028 3.972 18 N -0.388 5.388 19 C -0.381 4.381 20 H 0.089 0.911 21 C -0.265 4.265 22 N -0.617 5.617 23 Si 0.802 3.198 24 H -0.211 1.211 25 H -0.220 1.220 26 H -0.198 1.198 27 C -0.140 4.140 28 C -0.142 4.142 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.153 0.847 39 H 0.149 0.851 40 H 0.147 0.853 41 H 0.136 0.864 42 H 0.249 0.751 43 H 0.090 0.910 44 H 0.067 0.933 45 H 0.091 0.909 46 H 0.099 0.901 47 H 0.096 0.904 48 H 0.022 0.978 49 H 0.044 0.956 50 H 0.208 0.792 51 H 0.061 0.939 52 H 0.138 0.862 53 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 14.651 24.714 -13.887 31.911 hybrid contribution -1.240 -0.881 0.326 1.556 sum 13.411 23.834 -13.561 30.525 Atomic orbital electron populations 1.21914 0.95337 1.01645 1.01868 1.21049 0.95971 0.96323 0.97270 1.21834 1.01228 0.95082 1.02127 1.20698 1.01503 0.90027 0.98852 1.20069 0.94376 0.96464 0.97699 1.21218 1.00168 0.92873 1.00192 1.21179 0.95715 0.96557 0.99811 1.19456 0.95393 0.94201 0.99159 1.20734 1.04331 0.91952 0.96778 1.21016 0.78803 0.81839 0.88212 1.90693 1.42459 1.66857 1.45867 1.46095 1.57392 1.09391 1.23843 1.20761 0.93832 0.92752 0.87955 0.91848 1.22066 0.94443 1.01294 1.03180 1.21890 0.93709 0.97074 1.02937 1.20761 0.90521 0.89282 0.96678 1.42560 1.07766 1.04456 1.84044 1.19601 0.87629 0.92795 1.38077 0.91075 1.25554 1.02537 0.95041 1.03415 1.69801 1.36750 0.97482 1.57664 0.85156 0.80176 0.76920 0.77594 1.21073 1.22025 1.19798 1.21186 1.00055 0.93745 0.99046 1.21154 0.96942 0.95666 1.00395 0.92496 0.92463 0.93177 0.91516 0.92210 0.92240 0.92465 0.90902 0.90400 0.84661 0.85142 0.85255 0.86431 0.75092 0.90971 0.93263 0.90882 0.90144 0.90429 0.97822 0.95611 0.79242 0.93904 0.86223 0.85378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 8.76 71.98 0.63 -1.27 16 2 C -0.09 -1.05 2.91 -10.79 -0.03 -1.08 16 3 C -0.15 -1.37 9.19 71.98 0.66 -0.71 16 4 C -0.07 -1.01 4.84 29.85 0.14 -0.86 16 5 C -0.09 -1.59 4.71 -19.87 -0.09 -1.68 16 6 C -0.13 -2.35 9.70 22.27 0.22 -2.14 16 7 C -0.11 -2.30 9.70 22.27 0.22 -2.08 16 8 C -0.08 -1.77 4.37 -19.86 -0.09 -1.85 16 9 C -0.10 -1.79 5.83 29.11 0.17 -1.62 16 10 C 0.51 13.01 7.79 87.66 0.68 13.69 16 11 O -0.58 -19.75 15.70 -3.02 -0.05 -19.80 16 12 N -0.71 -16.49 4.53 -442.54 -2.00 -18.49 16 13 C 0.15 4.00 2.57 44.99 0.12 4.12 16 14 H 0.06 2.00 7.58 -2.39 -0.02 1.98 16 15 C -0.15 -3.35 9.48 71.98 0.68 -2.67 16 16 C -0.12 -3.50 4.87 30.59 0.15 -3.35 16 17 C 0.15 6.08 6.15 86.38 0.53 6.62 16 18 N -0.75 -37.75 5.60 -343.44 -1.92 -39.68 16 19 C -0.25 -14.04 9.99 84.03 0.84 -13.20 16 20 H 0.07 3.89 7.83 -2.91 -0.02 3.87 16 21 C -0.07 -4.19 5.50 84.86 0.47 -3.73 16 22 N -0.97 -58.72 13.06 21.65 0.28 -58.44 16 23 Si 0.97 46.11 29.55 68.60 2.03 48.14 16 24 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 25 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 26 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 27 C -0.12 -2.74 9.70 22.27 0.22 -2.52 16 28 C -0.12 -2.50 7.96 22.27 0.18 -2.32 16 29 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.05 0.75 6.27 -2.39 -0.01 0.74 16 32 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 33 H 0.06 0.50 8.14 -2.38 -0.02 0.49 16 34 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 36 H 0.07 0.98 8.09 -2.39 -0.02 0.96 16 37 H 0.08 0.95 8.09 -2.39 -0.02 0.93 16 38 H 0.14 1.93 8.06 -2.91 -0.02 1.91 16 39 H 0.13 2.16 8.06 -2.91 -0.02 2.13 16 40 H 0.13 1.57 8.08 -2.39 -0.02 1.55 16 41 H 0.12 1.80 8.08 -2.39 -0.02 1.78 16 42 H 0.41 7.68 8.60 -92.71 -0.80 6.89 16 43 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 46 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 47 H 0.08 2.34 8.14 -2.38 -0.02 2.32 16 48 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 49 H 0.03 0.99 7.75 -2.39 -0.02 0.97 16 50 H 0.38 19.93 7.67 -92.71 -0.71 19.22 16 51 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 52 H 0.12 2.54 8.06 -2.91 -0.02 2.52 16 53 H 0.13 2.22 8.04 -2.91 -0.02 2.19 16 Total: -1.00 -71.68 430.06 3.38 -68.29 By element: Atomic # 1 Polarization: 37.27 SS G_CDS: -0.64 Total: 36.64 kcal Atomic # 6 Polarization: -22.34 SS G_CDS: 5.69 Total: -16.66 kcal Atomic # 7 Polarization: -112.96 SS G_CDS: -3.65 Total: -116.61 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: -0.05 Total: -19.80 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Total: -71.68 3.38 -68.29 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732709760.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.504 kcal (2) G-P(sol) polarization free energy of solvation -71.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds