Wall clock time and date at job start Tue Mar 31 2020 17:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47148 * 2 1 4 4 H 1.08996 * 109.47211 * 305.45604 * 3 2 1 5 5 C 1.53001 * 109.46746 * 65.45736 * 3 2 1 6 6 C 1.50705 * 109.46789 * 186.74496 * 5 3 2 7 7 C 1.38261 * 119.99615 * 257.09130 * 6 5 3 8 8 C 1.38211 * 119.99748 * 180.27482 * 7 6 5 9 9 C 1.38258 * 119.99862 * 359.74726 * 8 7 6 10 10 C 1.38214 * 120.00221 * 359.97438 * 9 8 7 11 11 C 1.38211 * 120.00452 * 76.83997 * 6 5 3 12 12 C 1.50706 * 119.99769 * 0.02562 * 11 6 5 13 13 C 1.50701 * 109.47092 * 185.45237 * 3 2 1 14 14 O 1.21279 * 120.00169 * 240.00208 * 13 3 2 15 15 N 1.34780 * 119.99817 * 60.00378 * 13 3 2 16 16 C 1.46504 * 119.99848 * 179.97438 * 15 13 3 17 17 C 1.53000 * 109.47107 * 179.97438 * 16 15 13 18 18 H 1.09003 * 109.46645 * 55.00003 * 17 16 15 19 19 C 1.52998 * 109.46944 * 295.00237 * 17 16 15 20 20 C 1.53000 * 109.46830 * 174.99827 * 17 16 15 21 21 N 1.46499 * 109.46351 * 185.00031 * 20 17 16 22 22 C 1.36938 * 119.99443 * 180.02562 * 21 20 17 23 23 H 1.08001 * 120.00376 * 0.02562 * 22 21 20 24 24 C 1.38820 * 120.00239 * 180.02562 * 22 21 20 25 25 N 1.31621 * 119.99403 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 120.00183 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47496 * 59.99527 * 26 24 22 28 28 H 1.48500 * 109.47144 * 179.97438 * 26 24 22 29 29 H 1.48505 * 109.46888 * 299.99303 * 26 24 22 30 30 H 1.09007 * 109.46560 * 63.87815 * 1 2 3 31 31 H 1.08994 * 109.47408 * 183.87166 * 1 2 3 32 32 H 1.08995 * 109.47404 * 303.87938 * 1 2 3 33 33 H 1.09000 * 109.47549 * 239.99949 * 2 1 3 34 34 H 1.09002 * 109.46910 * 120.00032 * 2 1 3 35 35 H 1.09001 * 109.47526 * 66.73997 * 5 3 2 36 36 H 1.09002 * 109.47186 * 306.73861 * 5 3 2 37 37 H 1.07998 * 119.99923 * 0.04932 * 7 6 5 38 38 H 1.08000 * 119.99797 * 179.77676 * 8 7 6 39 39 H 1.08006 * 119.99887 * 179.97438 * 9 8 7 40 40 H 1.07999 * 119.99746 * 179.97438 * 10 9 8 41 41 H 1.09001 * 109.47050 * 265.85036 * 12 11 6 42 42 H 1.09000 * 109.47083 * 145.84974 * 12 11 6 43 43 H 1.08998 * 109.47215 * 25.85014 * 12 11 6 44 44 H 0.96997 * 119.99806 * 359.97438 * 15 13 3 45 45 H 1.08994 * 109.46640 * 299.99955 * 16 15 13 46 46 H 1.09005 * 109.46821 * 59.99627 * 16 15 13 47 47 H 1.09003 * 109.47259 * 299.99390 * 19 17 16 48 48 H 1.08996 * 109.47287 * 59.99806 * 19 17 16 49 49 H 1.09001 * 109.46809 * 179.97438 * 19 17 16 50 50 H 1.08996 * 109.46980 * 305.00038 * 20 17 16 51 51 H 1.08996 * 109.47006 * 65.00714 * 20 17 16 52 52 H 0.96995 * 120.00748 * 0.02562 * 21 20 17 53 53 H 0.96999 * 119.99595 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5991 1.9838 -0.8371 5 6 1.6450 2.1230 1.3122 6 6 1.9999 3.5862 1.2459 7 6 3.1222 4.0557 1.9028 8 6 3.4445 5.3986 1.8467 9 6 2.6475 6.2714 1.1293 10 6 1.5288 5.8010 0.4679 11 6 1.2064 4.4578 0.5241 12 6 -0.0140 3.9450 -0.1962 13 6 3.5409 1.4447 -0.1350 14 8 4.2272 1.9416 0.7328 15 7 4.1207 0.8944 -1.2202 16 6 5.5798 0.8969 -1.3517 17 6 5.9748 0.2158 -2.6635 18 1 5.4627 0.7019 -3.4939 19 6 5.5756 -1.2603 -2.6120 20 6 7.4878 0.3284 -2.8611 21 7 7.8509 -0.2172 -4.1713 22 6 9.1607 -0.2240 -4.5710 23 1 9.9260 0.1726 -3.9202 24 6 9.5049 -0.7405 -5.8127 25 7 8.5722 -1.2233 -6.6060 26 14 11.2916 -0.7503 -6.3576 27 1 12.0967 -1.5507 -5.4004 28 1 11.3927 -1.3508 -7.7120 29 1 11.8058 0.6424 -6.3934 30 1 -0.3633 0.4525 -0.9228 31 1 -0.3634 -1.0252 0.0694 32 1 -0.3634 0.5728 0.8531 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 2.1804 1.6564 2.1391 36 1 0.5715 2.0163 1.4681 37 1 3.7449 3.3738 2.4628 38 1 4.3191 5.7660 2.3629 39 1 2.8992 7.3208 1.0858 40 1 0.9061 6.4829 -0.0922 41 1 0.2442 3.7144 -1.2297 42 1 -0.7936 4.7067 -0.1777 43 1 -0.3755 3.0432 0.2979 44 1 3.5718 0.4967 -1.9140 45 1 5.9427 1.9247 -1.3519 46 1 6.0210 0.3560 -0.5145 47 1 6.0877 -1.7465 -1.7816 48 1 4.4978 -1.3405 -2.4711 49 1 5.8566 -1.7455 -3.5467 50 1 7.7840 1.3761 -2.8090 51 1 7.9991 -0.2331 -2.0793 52 1 7.1638 -0.5737 -4.7557 53 1 8.8127 -1.5846 -7.4735 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753636947.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:44 Heat of formation + Delta-G solvation = -50.992536 kcal Electronic energy + Delta-G solvation = -28716.171979 eV Core-core repulsion = 24971.910621 eV Total energy + Delta-G solvation = -3744.261358 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 332.221 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.37324 -40.02941 -38.28712 -36.61232 -35.94463 -34.12784 -33.59977 -32.63748 -31.86442 -29.59895 -28.02128 -27.62456 -27.14510 -25.75370 -24.24811 -22.86745 -22.63619 -21.61034 -21.50020 -20.55213 -19.19923 -18.17059 -17.47228 -17.17682 -16.51775 -16.40363 -16.27033 -15.99952 -15.60118 -15.43714 -15.19451 -15.14138 -14.86121 -14.58432 -14.22070 -14.00703 -13.82605 -13.64406 -13.55454 -13.52213 -13.35245 -13.03586 -12.96978 -12.80222 -12.79035 -12.75432 -12.40005 -12.22773 -12.17634 -12.02064 -11.96835 -11.71911 -11.67283 -11.64460 -11.54558 -11.44980 -10.94919 -10.62410 -10.01974 -9.53922 -9.38023 -9.01007 -7.96569 -5.24993 0.50770 0.59180 1.46647 1.49480 1.55630 1.75387 2.24931 2.56211 2.91483 3.36822 3.71694 3.73818 3.77711 3.90492 3.95578 4.06285 4.07832 4.13336 4.23455 4.30535 4.32446 4.40633 4.48376 4.54276 4.56131 4.63477 4.68373 4.70402 4.79102 4.81699 4.90161 4.92481 4.95726 4.99840 5.04100 5.06548 5.10629 5.12197 5.23359 5.25423 5.32307 5.33994 5.43340 5.45014 5.48245 5.52712 5.53634 5.66949 5.72749 5.88089 6.23960 6.26120 6.63323 7.32879 7.35469 8.07650 8.32602 9.26711 Molecular weight = 332.22amu Principal moments of inertia in cm(-1) A = 0.015092 B = 0.002260 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.845569 B =12385.352209 C =13393.115555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.114 4.114 3 C -0.093 4.093 4 H 0.111 0.889 5 C -0.059 4.059 6 C -0.094 4.094 7 C -0.097 4.097 8 C -0.152 4.152 9 C -0.131 4.131 10 C -0.138 4.138 11 C -0.093 4.093 12 C -0.117 4.117 13 C 0.507 3.493 14 O -0.569 6.569 15 N -0.718 5.718 16 C 0.142 3.858 17 C -0.094 4.094 18 H 0.076 0.924 19 C -0.133 4.133 20 C 0.158 3.842 21 N -0.741 5.741 22 C -0.250 4.250 23 H 0.072 0.928 24 C -0.073 4.073 25 N -0.967 5.967 26 Si 0.973 3.027 27 H -0.278 1.278 28 H -0.293 1.293 29 H -0.279 1.279 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.107 0.893 37 H 0.110 0.890 38 H 0.120 0.880 39 H 0.133 0.867 40 H 0.137 0.863 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.082 0.918 44 H 0.411 0.589 45 H 0.051 0.949 46 H 0.061 0.939 47 H 0.050 0.950 48 H 0.077 0.923 49 H 0.042 0.958 50 H 0.016 0.984 51 H 0.020 0.980 52 H 0.377 0.623 53 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.111 8.037 16.509 30.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.151 4.151 3 C -0.114 4.114 4 H 0.129 0.871 5 C -0.096 4.096 6 C -0.094 4.094 7 C -0.115 4.115 8 C -0.170 4.170 9 C -0.149 4.149 10 C -0.156 4.156 11 C -0.093 4.093 12 C -0.173 4.173 13 C 0.295 3.705 14 O -0.448 6.448 15 N -0.371 5.371 16 C 0.017 3.983 17 C -0.113 4.113 18 H 0.094 0.906 19 C -0.190 4.190 20 C 0.030 3.970 21 N -0.384 5.384 22 C -0.381 4.381 23 H 0.090 0.910 24 C -0.265 4.265 25 N -0.618 5.618 26 Si 0.802 3.198 27 H -0.204 1.204 28 H -0.219 1.219 29 H -0.205 1.205 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.125 0.875 37 H 0.128 0.872 38 H 0.138 0.862 39 H 0.151 0.849 40 H 0.155 0.845 41 H 0.094 0.906 42 H 0.095 0.905 43 H 0.101 0.899 44 H 0.248 0.752 45 H 0.070 0.930 46 H 0.079 0.921 47 H 0.069 0.931 48 H 0.096 0.904 49 H 0.061 0.939 50 H 0.034 0.966 51 H 0.038 0.962 52 H 0.210 0.790 53 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -23.433 8.415 17.149 30.233 hybrid contribution 1.335 -0.191 -0.941 1.644 sum -22.098 8.224 16.208 28.612 Atomic orbital electron populations 1.21851 0.93408 1.02733 1.02940 1.21536 0.97917 0.92617 1.03075 1.21403 0.89804 0.99541 1.00650 0.87067 1.20513 1.02587 0.90127 0.96359 1.19858 0.95293 0.96085 0.98148 1.21178 0.96173 0.95085 0.99060 1.21335 1.00510 0.94050 1.01147 1.21355 0.95561 1.00238 0.97701 1.21276 0.98017 0.95655 1.00655 1.20101 0.97761 0.93380 0.98033 1.20949 0.93959 1.02472 0.99949 1.21251 0.91759 0.76577 0.80917 1.90671 1.66274 1.46088 1.41728 1.45970 1.07230 1.60410 1.23456 1.21025 0.80827 0.99747 0.96664 1.21326 0.95546 0.97513 0.96897 0.90553 1.21703 1.01562 0.94268 1.01504 1.20707 0.93397 0.95677 0.87174 1.42490 1.05546 1.73747 1.16619 1.19587 0.86221 1.32676 0.99650 0.91006 1.25545 1.01656 1.02003 0.97329 1.69794 1.33308 1.47925 1.10759 0.85221 0.79936 0.77781 0.76882 1.20449 1.21882 1.20527 0.91427 0.91821 0.91651 0.90589 0.91913 0.91781 0.87497 0.87180 0.86161 0.84918 0.84480 0.90568 0.90531 0.89882 0.75235 0.93012 0.92100 0.93055 0.90425 0.93915 0.96646 0.96214 0.79040 0.93886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.77 71.98 0.70 -0.39 16 2 C -0.11 -1.25 5.35 30.59 0.16 -1.09 16 3 C -0.09 -1.40 2.09 -11.54 -0.02 -1.42 16 4 H 0.11 1.42 6.74 -2.39 -0.02 1.40 16 5 C -0.06 -0.95 3.82 29.85 0.11 -0.84 16 6 C -0.09 -1.96 4.63 -19.86 -0.09 -2.05 16 7 C -0.10 -2.44 7.98 22.27 0.18 -2.26 16 8 C -0.15 -3.58 10.05 22.27 0.22 -3.36 16 9 C -0.13 -2.66 10.05 22.27 0.22 -2.44 16 10 C -0.14 -2.56 9.72 22.27 0.22 -2.34 16 11 C -0.09 -1.67 5.82 -19.87 -0.12 -1.78 16 12 C -0.12 -1.26 8.72 71.24 0.62 -0.64 16 13 C 0.51 11.77 6.91 87.66 0.61 12.37 16 14 O -0.57 -17.52 12.84 -3.03 -0.04 -17.56 16 15 N -0.72 -15.55 5.14 -463.05 -2.38 -17.93 16 16 C 0.14 3.88 5.06 86.38 0.44 4.32 16 17 C -0.09 -2.85 2.46 -10.79 -0.03 -2.88 16 18 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 19 C -0.13 -3.76 8.94 71.98 0.64 -3.12 16 20 C 0.16 6.37 5.65 86.38 0.49 6.86 16 21 N -0.74 -37.76 5.33 -343.46 -1.83 -39.59 16 22 C -0.25 -14.15 9.99 84.04 0.84 -13.31 16 23 H 0.07 3.95 7.83 -2.91 -0.02 3.92 16 24 C -0.07 -4.21 5.50 84.86 0.47 -3.74 16 25 N -0.97 -58.97 13.06 21.65 0.28 -58.68 16 26 Si 0.97 46.43 29.55 68.60 2.03 48.45 16 27 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 28 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16 29 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 30 H 0.07 0.38 8.14 -2.38 -0.02 0.36 16 31 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.06 0.40 6.28 -2.39 -0.02 0.39 16 33 H 0.08 0.76 7.41 -2.39 -0.02 0.74 16 34 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.06 1.24 7.72 -2.39 -0.02 1.22 16 36 H 0.11 1.17 4.65 -2.39 -0.01 1.16 16 37 H 0.11 3.06 7.10 -2.91 -0.02 3.04 16 38 H 0.12 2.55 8.06 -2.91 -0.02 2.52 16 39 H 0.13 2.12 8.06 -2.91 -0.02 2.10 16 40 H 0.14 1.88 8.06 -2.91 -0.02 1.85 16 41 H 0.08 0.75 7.79 -2.39 -0.02 0.73 16 42 H 0.08 0.66 8.11 -2.39 -0.02 0.64 16 43 H 0.08 0.66 6.05 -2.39 -0.01 0.65 16 44 H 0.41 6.79 7.01 -92.71 -0.65 6.14 16 45 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 46 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 47 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 48 H 0.08 1.63 7.18 -2.39 -0.02 1.61 16 49 H 0.04 1.45 7.18 -2.39 -0.02 1.44 16 50 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 51 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 52 H 0.38 20.03 6.85 -92.71 -0.64 19.40 16 53 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 Total: -1.00 -71.20 413.41 3.34 -67.87 By element: Atomic # 1 Polarization: 35.94 SS G_CDS: -0.39 Total: 35.55 kcal Atomic # 6 Polarization: -23.77 SS G_CDS: 5.67 Total: -18.11 kcal Atomic # 7 Polarization: -112.28 SS G_CDS: -3.93 Total: -116.21 kcal Atomic # 8 Polarization: -17.52 SS G_CDS: -0.04 Total: -17.56 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.45 kcal Total: -71.20 3.34 -67.87 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753636947.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.874 kcal (2) G-P(sol) polarization free energy of solvation -71.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds