Wall clock time and date at job start Tue Mar 31 2020 18:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47311 * 2 1 4 4 H 1.09002 * 109.47142 * 179.97438 * 3 2 1 5 5 C 1.50703 * 109.47219 * 299.94139 * 3 2 1 6 6 H 1.08001 * 120.00034 * 115.89870 * 5 3 2 7 7 C 1.37876 * 119.99805 * 295.89717 * 5 3 2 8 8 N 1.31521 * 120.00050 * 353.47706 * 7 5 3 9 9 Si 1.86801 * 120.00078 * 173.47921 * 7 5 3 10 10 H 1.48491 * 109.47219 * 179.97438 * 9 7 5 11 11 H 1.48506 * 109.46781 * 300.00014 * 9 7 5 12 12 H 1.48503 * 109.47016 * 59.99552 * 9 7 5 13 13 N 1.46500 * 109.47063 * 59.93981 * 3 2 1 14 14 S 1.65601 * 120.00016 * 95.70255 * 13 3 2 15 15 O 1.42104 * 106.40535 * 178.00278 * 14 13 3 16 16 O 1.42099 * 106.40308 * 310.92440 * 14 13 3 17 17 C 1.76203 * 107.21771 * 64.46394 * 14 13 3 18 18 C 1.38275 * 119.93728 * 89.99768 * 17 14 13 19 19 C 1.38151 * 120.07444 * 179.97438 * 18 17 14 20 20 C 1.38707 * 119.95641 * 0.02562 * 19 18 17 21 21 O 1.35931 * 120.06313 * 179.97438 * 20 19 18 22 22 C 1.42902 * 116.99535 * 359.97438 * 21 20 19 23 23 C 1.38816 * 119.88512 * 359.97438 * 20 19 18 24 24 Cl 1.73599 * 120.04330 * 180.02562 * 23 20 19 25 25 C 1.38248 * 119.94024 * 269.72894 * 17 14 13 26 26 H 1.09008 * 109.46890 * 65.00272 * 1 2 3 27 27 H 1.08997 * 109.47302 * 185.00151 * 1 2 3 28 28 H 1.08997 * 109.47110 * 305.00616 * 1 2 3 29 29 H 1.09004 * 109.47298 * 240.00264 * 2 1 3 30 30 H 1.08998 * 109.46892 * 120.00220 * 2 1 3 31 31 H 0.96994 * 119.99797 * 355.02079 * 8 7 5 32 32 H 0.97003 * 120.00159 * 275.70356 * 13 3 2 33 33 H 1.07996 * 119.96407 * 0.02562 * 18 17 14 34 34 H 1.07999 * 120.02604 * 179.97438 * 19 18 17 35 35 H 1.09006 * 109.47081 * 60.00122 * 22 21 20 36 36 H 1.08997 * 109.46862 * 180.02562 * 22 21 20 37 37 H 1.09000 * 109.47490 * 300.00443 * 22 21 20 38 38 H 1.08003 * 119.97876 * 359.97438 * 25 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4424 0.0005 5 6 1.5389 2.1525 -1.2312 6 1 0.8644 2.9904 -1.1344 7 6 1.9415 1.7324 -2.4811 8 7 2.8598 0.7979 -2.5967 9 14 1.1828 2.4903 -4.0106 10 1 1.7825 1.8710 -5.2196 11 1 -0.2829 2.2512 -4.0065 12 1 1.4458 3.9518 -4.0213 13 7 1.5505 2.1335 1.1954 14 16 2.5055 2.2311 2.5448 15 8 1.7762 2.9911 3.4986 16 8 2.9789 0.9152 2.7974 17 6 3.9175 3.1939 2.1160 18 6 3.8939 4.5662 2.2841 19 6 4.9995 5.3239 1.9493 20 6 6.1344 4.7072 1.4434 21 8 7.2233 5.4506 1.1128 22 6 7.1294 6.8626 1.3118 23 6 6.1562 3.3294 1.2753 24 17 7.5745 2.5533 0.6432 25 6 5.0489 2.5754 1.6173 26 1 -0.3633 0.4343 -0.9315 27 1 -0.3634 -1.0237 0.0896 28 1 -0.3633 0.5895 0.8417 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.3056 0.4557 -1.8061 32 1 0.6670 2.5339 1.1966 33 1 3.0104 5.0462 2.6783 34 1 4.9801 6.3957 2.0805 35 1 6.9426 7.0694 2.3656 36 1 8.0637 7.3351 1.0085 37 1 6.3103 7.2604 0.7127 38 1 5.0665 1.5029 1.4914 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273939708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:05 Heat of formation + Delta-G solvation = -100.551119 kcal Electronic energy + Delta-G solvation = -25044.642625 eV Core-core repulsion = 21233.334321 eV Total energy + Delta-G solvation = -3811.308303 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 333.063 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.38254 -37.72934 -36.94141 -36.37272 -36.24490 -35.44452 -32.29766 -31.08245 -30.62088 -30.41809 -27.65084 -25.92877 -23.78282 -23.09182 -22.79954 -20.19016 -19.15774 -18.52563 -17.68222 -17.30847 -16.77337 -16.62342 -16.09442 -15.19650 -15.04409 -14.35040 -14.19105 -13.91174 -13.69867 -13.53088 -13.45960 -13.30430 -13.02724 -12.69941 -12.32266 -11.74716 -11.66712 -11.65126 -11.52690 -11.42644 -11.39339 -11.17441 -11.08251 -10.88889 -10.66608 -10.49071 -10.29286 -10.17498 -9.93738 -9.09339 -9.07719 -8.57552 -8.45520 -8.30158 -6.46091 -4.21066 0.67962 0.95864 1.04022 2.14622 2.87518 3.18287 3.37035 3.38201 3.56795 3.63226 4.16078 4.43466 4.44410 4.57418 4.81362 4.85928 4.89320 5.09371 5.19499 5.24079 5.34009 5.54149 5.57683 5.87853 5.96155 6.01733 6.18647 6.32939 6.37560 6.42658 6.81513 6.93339 6.99266 7.19058 7.28790 7.38737 7.64627 8.05702 8.32434 8.69896 9.47165 10.89376 Molecular weight = 333.06amu Principal moments of inertia in cm(-1) A = 0.010475 B = 0.005285 C = 0.004349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2672.401049 B = 5296.380130 C = 6436.341434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.140 4.140 3 C 0.268 3.732 4 H 0.031 0.969 5 C -0.600 4.600 6 H 0.058 0.942 7 C 0.029 3.971 8 N -0.902 5.902 9 Si 1.063 2.937 10 H -0.282 1.282 11 H -0.286 1.286 12 H -0.289 1.289 13 N -1.091 6.091 14 S 2.693 3.307 15 O -0.978 6.978 16 O -0.961 6.961 17 C -0.693 4.693 18 C 0.027 3.973 19 C -0.221 4.221 20 C 0.185 3.815 21 O -0.301 6.301 22 C 0.023 3.977 23 C -0.087 4.087 24 Cl -0.049 7.049 25 C 0.034 3.966 26 H 0.062 0.938 27 H 0.028 0.972 28 H 0.038 0.962 29 H 0.074 0.926 30 H 0.041 0.959 31 H 0.272 0.728 32 H 0.412 0.588 33 H 0.147 0.853 34 H 0.144 0.856 35 H 0.059 0.941 36 H 0.105 0.895 37 H 0.061 0.939 38 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.502 9.604 7.958 13.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.180 4.180 3 C 0.163 3.837 4 H 0.049 0.951 5 C -0.640 4.640 6 H 0.076 0.924 7 C -0.178 4.178 8 N -0.538 5.538 9 Si 0.891 3.109 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.216 1.216 13 N -0.852 5.852 14 S 2.780 3.220 15 O -0.969 6.969 16 O -0.951 6.951 17 C -0.778 4.778 18 C 0.007 3.993 19 C -0.241 4.241 20 C 0.137 3.863 21 O -0.213 6.213 22 C -0.072 4.072 23 C -0.115 4.115 24 Cl -0.021 7.021 25 C 0.014 3.986 26 H 0.081 0.919 27 H 0.047 0.953 28 H 0.057 0.943 29 H 0.093 0.907 30 H 0.059 0.941 31 H 0.084 0.916 32 H 0.247 0.753 33 H 0.165 0.835 34 H 0.162 0.838 35 H 0.078 0.922 36 H 0.123 0.877 37 H 0.080 0.920 38 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 5.870 8.946 6.967 12.768 hybrid contribution 0.160 0.984 1.095 1.480 sum 6.029 9.929 8.062 14.140 Atomic orbital electron populations 1.21503 0.96720 0.98594 1.01638 1.22035 0.96318 0.98891 1.00776 1.18640 0.93649 0.88944 0.82469 0.95110 1.21977 1.32442 1.18256 0.91282 0.92400 1.25687 0.95630 0.95440 1.00995 1.70800 1.22738 1.26282 1.33940 0.83623 0.75864 0.75550 0.75831 1.20722 1.21289 1.21566 1.55374 1.28232 1.70516 1.31120 1.01835 0.73227 0.73847 0.73044 1.93527 1.70956 1.72884 1.59497 1.93571 1.81761 1.35747 1.83987 1.31078 1.19308 1.08209 1.19234 1.20742 0.97523 0.91398 0.89603 1.21253 0.93779 1.00957 1.08094 1.18890 0.86555 0.89664 0.91197 1.86191 1.34988 1.20199 1.79921 1.23197 1.04277 0.78085 1.01667 1.20168 0.92076 0.89927 1.09378 1.98369 1.37960 1.80307 1.85417 1.20714 0.88739 1.00661 0.88508 0.91854 0.95282 0.94335 0.90730 0.94051 0.91597 0.75345 0.83501 0.83838 0.92191 0.87715 0.91989 0.82612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.55 9.48 37.16 0.35 -2.20 16 2 C -0.14 -3.12 5.58 -26.73 -0.15 -3.27 16 3 C 0.27 6.03 2.10 -69.08 -0.14 5.88 16 4 H 0.03 0.73 6.60 -51.93 -0.34 0.39 16 5 C -0.60 -14.83 7.54 -34.44 -0.26 -15.09 16 6 H 0.06 1.41 7.82 -52.49 -0.41 1.00 16 7 C 0.03 0.74 5.24 -17.82 -0.09 0.65 16 8 N -0.90 -24.92 12.83 55.43 0.71 -24.20 16 9 Si 1.06 23.47 29.91 -169.99 -5.08 18.38 16 10 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 11 H -0.29 -6.05 7.11 56.52 0.40 -5.65 16 12 H -0.29 -6.16 7.11 56.52 0.40 -5.76 16 13 N -1.09 -20.81 4.76 -5.88 -0.03 -20.84 16 14 S 2.69 48.60 5.65 -107.50 -0.61 48.00 16 15 O -0.98 -18.22 17.28 -57.17 -0.99 -19.20 16 16 O -0.96 -19.51 16.62 -57.17 -0.95 -20.46 16 17 C -0.69 -11.65 5.80 -39.56 -0.23 -11.88 16 18 C 0.03 0.39 9.51 -39.60 -0.38 0.01 16 19 C -0.22 -2.85 9.04 -39.44 -0.36 -3.21 16 20 C 0.18 2.68 6.68 -39.19 -0.26 2.41 16 21 O -0.30 -3.83 9.96 -19.52 -0.19 -4.03 16 22 C 0.02 0.18 9.81 101.05 0.99 1.17 16 23 C -0.09 -1.43 6.33 -39.36 -0.25 -1.68 16 24 Cl -0.05 -0.77 28.50 -51.86 -1.48 -2.25 16 25 C 0.03 0.58 8.67 -39.57 -0.34 0.23 16 26 H 0.06 1.34 7.40 -51.92 -0.38 0.96 16 27 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.04 0.70 7.19 -51.93 -0.37 0.33 16 29 H 0.07 1.80 6.21 -51.93 -0.32 1.48 16 30 H 0.04 0.89 7.71 -51.93 -0.40 0.49 16 31 H 0.27 7.47 6.08 -40.82 -0.25 7.22 16 32 H 0.41 7.16 8.46 -34.47 -0.29 6.87 16 33 H 0.15 1.81 7.61 -52.49 -0.40 1.41 16 34 H 0.14 1.32 6.30 -52.49 -0.33 0.99 16 35 H 0.06 0.38 7.66 -51.93 -0.40 -0.02 16 36 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.44 7.66 -51.93 -0.40 0.04 16 38 H 0.16 2.66 7.61 -52.48 -0.40 2.26 16 LS Contribution 343.20 15.07 5.17 5.17 Total: -1.00 -31.18 343.20 -8.91 -40.08 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -4.34 Total: 6.31 kcal Atomic # 6 Polarization: -25.85 SS G_CDS: -1.12 Total: -26.97 kcal Atomic # 7 Polarization: -45.73 SS G_CDS: 0.68 Total: -45.04 kcal Atomic # 8 Polarization: -41.56 SS G_CDS: -2.13 Total: -43.69 kcal Atomic # 14 Polarization: 23.47 SS G_CDS: -5.08 Total: 18.38 kcal Atomic # 16 Polarization: 48.60 SS G_CDS: -0.61 Total: 48.00 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -1.48 Total: -2.25 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.18 -8.91 -40.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273939708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.469 kcal (2) G-P(sol) polarization free energy of solvation -31.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds