Wall clock time and date at job start Tue Mar 31 2020 17:59:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42904 * 114.00490 * 2 1 4 4 C 1.53001 * 109.47175 * 180.02562 * 3 2 1 5 5 N 1.46490 * 109.47279 * 64.99998 * 4 3 2 6 6 C 1.36940 * 120.00076 * 274.99945 * 5 4 3 7 7 H 1.07997 * 120.00123 * 141.05540 * 6 5 4 8 8 C 1.38813 * 119.99758 * 321.05463 * 6 5 4 9 9 N 1.31619 * 119.99997 * 339.25945 * 8 6 5 10 10 Si 1.86801 * 120.00100 * 159.26108 * 8 6 5 11 11 H 1.48498 * 109.47161 * 59.99547 * 10 8 6 12 12 H 1.48502 * 109.47391 * 180.02562 * 10 8 6 13 13 H 1.48507 * 109.46846 * 299.99919 * 10 8 6 14 14 S 1.65606 * 120.00364 * 95.00025 * 5 4 3 15 15 O 1.42099 * 106.40516 * 151.06663 * 14 5 4 16 16 O 1.42103 * 106.39741 * 18.14201 * 14 5 4 17 17 C 1.76204 * 107.21671 * 264.60665 * 14 5 4 18 18 C 1.38262 * 119.99413 * 89.99781 * 17 14 5 19 19 C 1.38214 * 120.02550 * 180.25658 * 18 17 14 20 20 C 1.38229 * 120.01295 * 359.48602 * 19 18 17 21 21 C 1.50711 * 120.00663 * 180.23267 * 20 19 18 22 22 C 1.38330 * 119.98969 * 0.53406 * 20 19 18 23 23 Cl 1.73594 * 120.01602 * 179.69742 * 22 20 19 24 24 C 1.38190 * 119.99069 * 270.02213 * 17 14 5 25 25 H 1.08997 * 109.47460 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47436 * 300.00232 * 1 2 3 27 27 H 1.09005 * 109.47317 * 59.99969 * 1 2 3 28 28 H 1.08998 * 109.46945 * 59.99794 * 3 2 1 29 29 H 1.09001 * 109.46877 * 300.00056 * 3 2 1 30 30 H 1.08997 * 109.47038 * 304.99393 * 4 3 2 31 31 H 1.09002 * 109.46539 * 185.00278 * 4 3 2 32 32 H 0.97008 * 120.00195 * 180.02562 * 9 8 6 33 33 H 1.08007 * 119.98314 * 359.97383 * 18 17 14 34 34 H 1.08007 * 119.98869 * 179.72461 * 19 18 17 35 35 H 1.08999 * 109.46821 * 270.30384 * 21 20 19 36 36 H 1.09000 * 109.46561 * 30.30503 * 21 20 19 37 37 H 1.09003 * 109.46816 * 150.29844 * 21 20 19 38 38 H 1.08000 * 120.01085 * 359.97172 * 24 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9757 0.5643 -1.2526 6 6 3.9987 -0.7999 -1.3699 7 1 3.6997 -1.2674 -2.2964 8 6 4.4063 -1.5818 -0.2979 9 7 5.1406 -1.0552 0.6591 10 14 3.9127 -3.3815 -0.2134 11 1 4.4436 -4.0967 -1.4015 12 1 4.4697 -3.9902 1.0213 13 1 2.4316 -3.4880 -0.1925 14 16 4.4455 1.5128 -2.5263 15 8 5.3986 0.7562 -3.2600 16 8 4.7215 2.7988 -1.9884 17 6 3.0452 1.7038 -3.5787 18 6 2.1716 2.7574 -3.3823 19 6 1.0701 2.9048 -4.2041 20 6 0.8471 2.0051 -5.2295 21 6 -0.3512 2.1690 -6.1287 22 6 1.7205 0.9506 -5.4262 23 17 1.4367 -0.1843 -6.7089 24 6 2.8201 0.8004 -4.5998 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 1.6886 1.8464 0.8900 29 1 1.6887 1.8464 -0.8900 30 1 3.8514 0.5682 0.8410 31 1 3.9785 2.1764 0.0890 32 1 5.4258 -1.6018 1.4082 33 1 2.3475 3.4628 -2.5835 34 1 0.3856 3.7255 -4.0473 35 1 -1.1982 1.6273 -5.7077 36 1 -0.6012 3.2267 -6.2116 37 1 -0.1206 1.7717 -7.1172 38 1 3.5026 -0.0225 -4.7532 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414458607.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:03 Heat of formation + Delta-G solvation = -89.889775 kcal Electronic energy + Delta-G solvation = -25601.721206 eV Core-core repulsion = 21790.875213 eV Total energy + Delta-G solvation = -3810.845993 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 333.063 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -39.33540 -37.38402 -36.42145 -36.08826 -35.21924 -34.66182 -32.97608 -31.48911 -30.73361 -28.78748 -27.23397 -25.82529 -24.22646 -22.82273 -21.92883 -21.52639 -18.64917 -17.90581 -16.79239 -16.50191 -15.89856 -15.43928 -15.31926 -15.27299 -14.63885 -14.45012 -14.30194 -14.20988 -14.05714 -13.69684 -13.24719 -12.58032 -12.53159 -12.17580 -12.07754 -11.90244 -11.72959 -11.48195 -11.38178 -11.19367 -11.07843 -11.02943 -10.93468 -10.84890 -10.78193 -10.47169 -10.16098 -10.08670 -10.02537 -9.07832 -8.98512 -8.89913 -8.67352 -7.67914 -6.22372 -3.89379 0.86429 1.25628 1.48948 2.15125 3.31473 3.33937 3.38896 3.43807 4.19062 4.48503 4.53143 4.65189 4.69139 4.78456 5.00387 5.13687 5.23221 5.40909 5.42823 5.47298 5.63901 5.67042 5.70421 5.82673 5.86274 5.91773 5.96548 6.03917 6.12238 6.21602 6.27453 6.31534 6.41486 6.77439 7.14355 7.36425 7.68655 7.99251 8.44415 9.05724 9.43283 10.81262 Molecular weight = 333.06amu Principal moments of inertia in cm(-1) A = 0.011988 B = 0.005383 C = 0.005217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2335.086433 B = 5200.699950 C = 5365.892357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.351 6.351 3 C 0.048 3.952 4 C 0.122 3.878 5 N -0.831 5.831 6 C -0.256 4.256 7 H 0.085 0.915 8 C 0.050 3.950 9 N -0.855 5.855 10 Si 0.917 3.083 11 H -0.274 1.274 12 H -0.286 1.286 13 H -0.271 1.271 14 S 2.611 3.389 15 O -0.969 6.969 16 O -1.000 7.000 17 C -0.641 4.641 18 C -0.020 4.020 19 C -0.136 4.136 20 C -0.040 4.040 21 C -0.122 4.122 22 C -0.060 4.060 23 Cl -0.070 7.070 24 C -0.003 4.003 25 H 0.076 0.924 26 H 0.028 0.972 27 H 0.029 0.971 28 H 0.040 0.960 29 H 0.031 0.969 30 H 0.119 0.881 31 H 0.078 0.922 32 H 0.268 0.732 33 H 0.141 0.859 34 H 0.134 0.866 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.991 5.358 -6.308 14.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.269 6.269 3 C -0.031 4.031 4 C -0.006 4.006 5 N -0.661 5.661 6 C -0.395 4.395 7 H 0.102 0.898 8 C -0.158 4.158 9 N -0.495 5.495 10 Si 0.744 3.256 11 H -0.200 1.200 12 H -0.212 1.212 13 H -0.196 1.196 14 S 2.709 3.291 15 O -0.958 6.958 16 O -0.989 6.989 17 C -0.723 4.723 18 C -0.039 4.039 19 C -0.155 4.155 20 C -0.041 4.041 21 C -0.179 4.179 22 C -0.087 4.087 23 Cl -0.041 7.041 24 C -0.022 4.022 25 H 0.095 0.905 26 H 0.047 0.953 27 H 0.048 0.952 28 H 0.058 0.942 29 H 0.049 0.951 30 H 0.137 0.863 31 H 0.096 0.904 32 H 0.078 0.922 33 H 0.159 0.841 34 H 0.152 0.848 35 H 0.097 0.903 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -10.993 5.565 -6.556 13.957 hybrid contribution -1.269 -0.768 -0.274 1.508 sum -12.262 4.797 -6.831 14.833 Atomic orbital electron populations 1.22652 0.83924 1.01723 0.98557 1.88234 1.16772 1.26979 1.94869 1.23192 0.96985 0.84832 0.98052 1.21415 0.89102 0.98693 0.91377 1.52442 1.76727 1.13668 1.23284 1.18877 1.40121 0.78892 1.01599 0.89768 1.25318 0.94039 0.99293 0.97148 1.69940 1.30962 1.37209 1.11433 0.86162 0.79331 0.82528 0.77581 1.19956 1.21153 1.19611 1.06202 0.73931 0.73603 0.75315 1.93437 1.57087 1.71157 1.74155 1.93390 1.83594 1.43891 1.78071 1.31632 1.23571 1.02965 1.14110 1.20983 0.91506 0.94458 0.96931 1.21044 0.98701 0.99903 0.95823 1.19931 0.95447 0.92836 0.95855 1.20941 0.95087 1.02906 0.98928 1.20843 0.98670 0.94501 0.94707 1.98341 1.96018 1.60129 1.49593 1.20842 0.94204 0.96744 0.90423 0.90534 0.95310 0.95201 0.94154 0.95064 0.86342 0.90360 0.92197 0.84125 0.84784 0.90303 0.90922 0.90623 0.83275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 101.05 1.11 1.55 16 2 O -0.35 -7.00 9.94 -35.23 -0.35 -7.35 16 3 C 0.05 0.89 6.28 37.16 0.23 1.12 16 4 C 0.12 2.64 5.73 -4.05 -0.02 2.62 16 5 N -0.83 -19.75 2.80 -59.92 -0.17 -19.92 16 6 C -0.26 -6.53 8.18 -15.06 -0.12 -6.66 16 7 H 0.08 2.10 7.91 -52.49 -0.42 1.69 16 8 C 0.05 1.29 5.01 -17.43 -0.09 1.21 16 9 N -0.86 -22.64 11.46 55.49 0.64 -22.00 16 10 Si 0.92 20.42 29.60 -169.99 -5.03 15.39 16 11 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 12 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 13 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 14 S 2.61 59.55 5.64 -107.50 -0.61 58.95 16 15 O -0.97 -25.01 16.59 -57.17 -0.95 -25.96 16 16 O -1.00 -23.43 15.75 -57.17 -0.90 -24.33 16 17 C -0.64 -12.14 5.97 -39.59 -0.24 -12.37 16 18 C -0.02 -0.32 8.64 -39.58 -0.34 -0.66 16 19 C -0.14 -1.80 9.70 -39.59 -0.38 -2.19 16 20 C -0.04 -0.53 5.88 -104.59 -0.62 -1.15 16 21 C -0.12 -1.19 9.61 36.01 0.35 -0.85 16 22 C -0.06 -0.93 6.31 -39.50 -0.25 -1.18 16 23 Cl -0.07 -0.96 27.30 -51.86 -1.42 -2.37 16 24 C 0.00 -0.05 9.31 -39.55 -0.37 -0.41 16 25 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 26 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.03 0.53 7.24 -51.93 -0.38 0.16 16 30 H 0.12 2.84 5.56 -51.93 -0.29 2.55 16 31 H 0.08 1.61 6.88 -51.93 -0.36 1.25 16 32 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 33 H 0.14 2.07 7.62 -52.48 -0.40 1.67 16 34 H 0.13 1.31 8.06 -52.48 -0.42 0.89 16 35 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 37 H 0.07 0.72 6.90 -51.93 -0.36 0.37 16 38 H 0.15 2.76 7.62 -52.49 -0.40 2.37 16 LS Contribution 346.94 15.07 5.23 5.23 Total: -1.00 -30.90 346.94 -8.98 -39.88 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -4.69 Total: 1.45 kcal Atomic # 6 Polarization: -18.22 SS G_CDS: -0.74 Total: -18.96 kcal Atomic # 7 Polarization: -42.39 SS G_CDS: 0.47 Total: -41.92 kcal Atomic # 8 Polarization: -55.44 SS G_CDS: -2.20 Total: -57.64 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.03 Total: 15.39 kcal Atomic # 16 Polarization: 59.55 SS G_CDS: -0.61 Total: 58.95 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -1.42 Total: -2.37 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.90 -8.98 -39.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414458607.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.009 kcal (2) G-P(sol) polarization free energy of solvation -30.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds