Wall clock time and date at job start Tue Mar 31 2020 17:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42104 * 108.57875 * 2 1 4 4 O 1.42102 * 108.57827 * 228.97886 * 2 1 3 5 5 C 1.81394 * 101.92211 * 114.49206 * 2 1 3 6 6 C 1.53002 * 109.47170 * 180.02562 * 5 2 1 7 7 N 1.46505 * 109.47278 * 179.97438 * 6 5 2 8 8 S 1.65597 * 120.00072 * 164.99641 * 7 6 5 9 9 O 1.42098 * 106.40087 * 311.45861 * 8 7 6 10 10 O 1.42098 * 106.39917 * 178.54168 * 8 7 6 11 11 C 1.76200 * 107.21637 * 65.00174 * 8 7 6 12 12 C 1.38663 * 119.87357 * 270.24777 * 11 8 7 13 13 C 1.38609 * 120.49761 * 180.30197 * 12 11 8 14 14 C 1.37636 * 120.25144 * 359.45034 * 13 12 11 15 15 C 1.40702 * 119.74414 * 0.27080 * 14 13 12 16 16 C 1.41389 * 120.24759 * 179.97438 * 15 14 13 17 17 H 1.08002 * 120.00485 * 204.39220 * 16 15 14 18 18 C 1.39942 * 119.99857 * 24.38333 * 16 15 14 19 19 N 1.30830 * 119.99921 * 17.87213 * 18 16 15 20 20 Si 1.86807 * 120.00314 * 197.86702 * 18 16 15 21 21 H 1.48500 * 109.46633 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.46828 * 120.00062 * 20 18 16 23 23 H 1.48497 * 109.47200 * 240.00400 * 20 18 16 24 24 C 1.37598 * 119.87586 * 90.00318 * 11 8 7 25 25 H 1.09002 * 109.46967 * 305.51010 * 1 2 3 26 26 H 1.09004 * 109.47120 * 65.51077 * 1 2 3 27 27 H 1.08998 * 109.47420 * 185.51222 * 1 2 3 28 28 H 1.08997 * 109.47432 * 59.99954 * 5 2 1 29 29 H 1.09003 * 109.46780 * 299.99644 * 5 2 1 30 30 H 1.08997 * 109.47200 * 59.99543 * 6 5 2 31 31 H 1.09003 * 109.46759 * 299.99389 * 6 5 2 32 32 H 0.97007 * 119.99457 * 345.00054 * 7 6 5 33 33 H 1.08001 * 119.74681 * 0.04757 * 12 11 8 34 34 H 1.08003 * 119.87315 * 179.72263 * 13 12 11 35 35 H 1.07999 * 120.13059 * 180.25214 * 14 13 12 36 36 H 0.97008 * 119.99884 * 179.97438 * 19 18 16 37 37 H 1.07997 * 120.12829 * 359.97438 * 24 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8841 -1.0162 5 6 2.1887 -0.7358 1.6151 6 6 3.7055 -0.8185 1.7983 7 7 4.0081 -1.4122 3.1030 8 16 5.5347 -1.9667 3.4264 9 8 5.9112 -2.7740 2.3193 10 8 5.5131 -2.4439 4.7646 11 6 6.6101 -0.5710 3.4131 12 6 7.2191 -0.1795 2.2305 13 6 8.0723 0.9126 2.2066 14 6 8.3153 1.6280 3.3570 15 6 7.6983 1.2434 4.5616 16 6 7.9408 1.9704 5.7498 17 1 7.8154 1.4928 6.7103 18 6 8.3436 3.3089 5.6813 19 7 8.1646 3.9902 4.5788 20 14 9.1366 4.1228 7.1639 21 1 9.2251 3.1442 8.2773 22 1 10.5005 4.5866 6.8034 23 1 8.3151 5.2844 7.5894 24 6 6.8385 0.1294 4.5753 25 1 -0.3633 0.5969 0.8366 26 1 -0.3633 0.4260 -0.9352 27 1 -0.3634 -1.0229 0.0987 28 1 1.7610 -1.7370 1.6663 29 1 1.7610 -0.1172 2.4042 30 1 4.1328 0.1829 1.7473 31 1 4.1335 -1.4369 1.0093 32 1 3.3142 -1.4806 3.7775 33 1 7.0304 -0.7323 1.3221 34 1 8.5448 1.2059 1.2807 35 1 8.9773 2.4811 3.3353 36 1 8.4435 4.9181 4.5314 37 1 6.3597 -0.1746 5.4944 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795070607.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:28 Heat of formation + Delta-G solvation = -125.891799 kcal Electronic energy + Delta-G solvation = -24109.266672 eV Core-core repulsion = 20298.903220 eV Total energy + Delta-G solvation = -3810.363451 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 333.058 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -37.65440 -37.20397 -36.80019 -36.30116 -35.93422 -35.37030 -33.85813 -30.56100 -30.08830 -29.80992 -29.76753 -25.50424 -23.54934 -21.91769 -20.99671 -19.48693 -18.95294 -18.08199 -17.22858 -17.00154 -16.49766 -16.07131 -15.93162 -15.78782 -15.23113 -14.96622 -14.67757 -14.45302 -13.63545 -13.56179 -13.49304 -13.36069 -12.80661 -12.59379 -12.37251 -12.27806 -12.18467 -11.94039 -11.86478 -11.65962 -11.57499 -11.43610 -11.39054 -11.33176 -11.00681 -10.92083 -10.79110 -10.60183 -9.85311 -9.71515 -9.36676 -9.28034 -8.05717 -7.71839 -6.93645 -4.54624 -0.36018 0.95330 2.16548 2.43044 2.61879 2.99925 3.03765 3.06798 3.29586 3.53868 3.71049 3.82310 4.12431 4.23411 4.35472 4.42019 4.43429 4.68928 4.92515 5.05342 5.26449 5.31613 5.40439 5.49233 5.81340 6.05441 6.16673 6.64503 6.75345 6.81150 7.00861 7.07939 7.20706 7.36487 7.72222 7.79963 7.93401 8.39403 8.65948 8.70650 10.01714 Molecular weight = 333.06amu Principal moments of inertia in cm(-1) A = 0.013700 B = 0.003498 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.272187 B = 8003.104525 C = 9019.527119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.656 4.656 2 S 2.426 3.574 3 O -0.928 6.928 4 O -0.933 6.933 5 C -0.626 4.626 6 C 0.131 3.869 7 N -1.116 6.116 8 S 2.687 3.313 9 O -0.971 6.971 10 O -0.969 6.969 11 C -0.633 4.633 12 C -0.151 4.151 13 C -0.119 4.119 14 C -0.117 4.117 15 C 0.091 3.909 16 C -0.460 4.460 17 H 0.083 0.917 18 C 0.075 3.925 19 N -0.792 5.792 20 Si 0.911 3.089 21 H -0.259 1.259 22 H -0.271 1.271 23 H -0.273 1.273 24 C -0.124 4.124 25 H 0.129 0.871 26 H 0.130 0.870 27 H 0.128 0.872 28 H 0.140 0.860 29 H 0.141 0.859 30 H 0.088 0.912 31 H 0.095 0.905 32 H 0.416 0.584 33 H 0.108 0.892 34 H 0.100 0.900 35 H 0.126 0.874 36 H 0.283 0.717 37 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.460 -4.313 -5.366 16.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.805 4.805 2 S 2.606 3.394 3 O -0.926 6.926 4 O -0.930 6.930 5 C -0.755 4.755 6 C 0.003 3.997 7 N -0.874 5.874 8 S 2.783 3.217 9 O -0.961 6.961 10 O -0.960 6.960 11 C -0.726 4.726 12 C -0.172 4.172 13 C -0.138 4.138 14 C -0.137 4.137 15 C 0.088 3.912 16 C -0.489 4.489 17 H 0.101 0.899 18 C -0.144 4.144 19 N -0.417 5.417 20 Si 0.735 3.265 21 H -0.182 1.182 22 H -0.196 1.196 23 H -0.199 1.199 24 C -0.146 4.146 25 H 0.148 0.852 26 H 0.148 0.852 27 H 0.147 0.853 28 H 0.158 0.842 29 H 0.159 0.841 30 H 0.106 0.894 31 H 0.113 0.887 32 H 0.250 0.750 33 H 0.126 0.874 34 H 0.118 0.882 35 H 0.143 0.857 36 H 0.094 0.906 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -13.521 -4.670 -6.107 15.554 hybrid contribution -0.486 1.029 1.504 1.886 sum -14.007 -3.641 -4.602 15.187 Atomic orbital electron populations 1.30281 1.26781 1.11552 1.11905 1.07777 0.78384 0.75964 0.77306 1.93654 1.78728 1.34050 1.86119 1.93628 1.78877 1.67085 1.53415 1.30639 1.05513 1.14823 1.24498 1.20875 0.91316 1.00943 0.86581 1.55563 1.29816 1.80011 1.22017 1.01742 0.72406 0.74576 0.72959 1.93526 1.82028 1.66248 1.54334 1.93545 1.86115 1.79673 1.36620 1.29683 1.19790 1.21891 1.01205 1.20126 1.02808 0.99459 0.94847 1.20826 0.99274 0.96006 0.97721 1.21660 0.99684 0.99897 0.92449 1.17691 0.89222 0.90776 0.93531 1.19652 1.39991 0.95332 0.93958 0.89858 1.25944 0.93322 0.97522 0.97562 1.69792 1.34211 1.09964 1.27760 0.86204 0.79399 0.79305 0.81553 1.18224 1.19577 1.19857 1.20768 1.00632 0.98392 0.94801 0.85240 0.85157 0.85329 0.84162 0.84050 0.89403 0.88706 0.75040 0.87435 0.88211 0.85675 0.90567 0.87021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -2.43 10.62 101.05 1.07 -1.36 16 2 S 2.43 19.43 5.36 -107.50 -0.58 18.85 16 3 O -0.93 -11.65 18.10 -57.83 -1.05 -12.70 16 4 O -0.93 -11.09 18.10 -57.83 -1.05 -12.13 16 5 C -0.63 -4.43 5.95 37.16 0.22 -4.21 16 6 C 0.13 1.60 6.23 -4.04 -0.03 1.58 16 7 N -1.12 -14.98 6.00 -10.61 -0.06 -15.05 16 8 S 2.69 49.03 5.73 -107.50 -0.62 48.41 16 9 O -0.97 -19.41 16.74 -57.17 -0.96 -20.37 16 10 O -0.97 -19.67 17.27 -57.17 -0.99 -20.66 16 11 C -0.63 -13.69 5.94 -39.66 -0.24 -13.92 16 12 C -0.15 -3.28 9.53 -39.29 -0.37 -3.65 16 13 C -0.12 -2.68 10.02 -39.66 -0.40 -3.07 16 14 C -0.12 -2.91 8.70 -38.87 -0.34 -3.25 16 15 C 0.09 2.35 5.58 -106.82 -0.60 1.75 16 16 C -0.46 -11.73 9.05 -37.75 -0.34 -12.08 16 17 H 0.08 2.05 7.91 -52.49 -0.41 1.63 16 18 C 0.07 1.79 5.14 -17.34 -0.09 1.71 16 19 N -0.79 -19.51 10.95 55.55 0.61 -18.91 16 20 Si 0.91 17.94 29.60 -169.99 -5.03 12.91 16 21 H -0.26 -5.08 7.11 56.52 0.40 -4.67 16 22 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 23 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 24 C -0.12 -2.96 9.26 -38.87 -0.36 -3.32 16 25 H 0.13 0.27 8.14 -51.92 -0.42 -0.16 16 26 H 0.13 0.44 8.14 -51.92 -0.42 0.02 16 27 H 0.13 0.23 8.14 -51.92 -0.42 -0.20 16 28 H 0.14 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.14 0.63 8.14 -51.92 -0.42 0.21 16 30 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.09 1.17 7.75 -51.93 -0.40 0.76 16 32 H 0.42 4.27 8.65 -34.48 -0.30 3.98 16 33 H 0.11 2.09 7.61 -52.49 -0.40 1.69 16 34 H 0.10 1.97 8.06 -52.48 -0.42 1.54 16 35 H 0.13 3.16 6.15 -52.49 -0.32 2.84 16 36 H 0.28 6.31 8.30 -40.82 -0.34 5.98 16 37 H 0.11 2.52 7.60 -52.49 -0.40 2.12 16 LS Contribution 346.06 15.07 5.22 5.22 Total: -1.00 -37.06 346.06 -10.29 -47.35 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -4.33 Total: 6.89 kcal Atomic # 6 Polarization: -38.36 SS G_CDS: -1.46 Total: -39.83 kcal Atomic # 7 Polarization: -34.50 SS G_CDS: 0.54 Total: -33.95 kcal Atomic # 8 Polarization: -61.82 SS G_CDS: -4.04 Total: -65.86 kcal Atomic # 14 Polarization: 17.94 SS G_CDS: -5.03 Total: 12.91 kcal Atomic # 16 Polarization: 68.46 SS G_CDS: -1.19 Total: 67.27 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -37.06 -10.29 -47.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795070607.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.541 kcal (2) G-P(sol) polarization free energy of solvation -37.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds