Wall clock time and date at job start Tue Mar 31 2020 17:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.40308 * 126.64565 * 2 1 4 4 C 1.35169 * 107.12179 * 180.02562 * 3 2 1 5 5 S 1.76203 * 125.60814 * 180.02562 * 4 3 2 6 6 N 1.65600 * 107.21828 * 89.99854 * 5 4 3 7 7 O 1.42104 * 106.40211 * 203.53570 * 5 4 3 8 8 O 1.42098 * 106.40091 * 336.46142 * 5 4 3 9 9 O 1.33909 * 108.78438 * 359.76881 * 4 3 2 10 10 C 1.34937 * 109.38036 * 0.38075 * 9 4 3 11 11 C 1.46471 * 125.99994 * 179.88655 * 10 9 4 12 12 O 1.21623 * 120.00284 * 179.68895 * 11 10 9 13 13 O 1.34904 * 119.99769 * 359.68971 * 11 10 9 14 14 C 1.45196 * 116.99901 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47070 * 179.97438 * 14 13 11 16 16 O 1.42899 * 109.47007 * 65.00337 * 15 14 13 17 17 C 1.42898 * 114.00061 * 180.02562 * 16 15 14 18 18 C 1.50702 * 109.47186 * 179.97438 * 17 16 15 19 19 H 1.08001 * 120.00125 * 359.97438 * 18 17 16 20 20 C 1.37877 * 120.00284 * 179.97438 * 18 17 16 21 21 N 1.31519 * 119.99829 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00327 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46993 * 60.00440 * 22 20 18 24 24 H 1.48504 * 109.47248 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.47313 * 300.00219 * 22 20 18 26 26 H 1.09000 * 109.47794 * 269.96173 * 1 2 3 27 27 H 1.09005 * 109.47303 * 29.96096 * 1 2 3 28 28 H 1.09006 * 109.47304 * 149.95558 * 1 2 3 29 29 H 1.07991 * 126.44240 * 0.02562 * 3 2 1 30 30 H 0.97003 * 119.99939 * 0.02562 * 6 5 4 31 31 H 0.97000 * 120.00272 * 179.97438 * 6 5 4 32 32 H 1.08996 * 109.47465 * 300.00088 * 14 13 11 33 33 H 1.08999 * 109.47008 * 60.00097 * 14 13 11 34 34 H 1.09001 * 109.47541 * 185.00107 * 15 14 13 35 35 H 1.09002 * 109.47459 * 305.00456 * 15 14 13 36 36 H 1.08999 * 109.47332 * 299.99408 * 17 16 15 37 37 H 1.08997 * 109.47421 * 60.00259 * 17 16 15 38 38 H 0.96998 * 120.00140 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3445 1.1257 0.0000 4 6 3.6184 0.6740 -0.0006 5 16 5.0641 1.6813 -0.0002 6 7 5.4666 1.9605 1.5817 7 8 6.1077 0.8857 -0.5453 8 8 4.6787 2.9365 -0.5436 9 8 3.6011 -0.6650 0.0042 10 6 2.3226 -1.0963 -0.0006 11 6 1.8856 -2.4943 0.0000 12 8 0.6989 -2.7605 0.0011 13 8 2.7995 -3.4866 -0.0007 14 6 2.2944 -4.8479 0.0005 15 6 3.4694 -5.8278 -0.0011 16 8 4.2018 -5.6953 1.2188 17 6 5.3268 -6.5706 1.3193 18 6 6.0218 -6.3462 2.6375 19 1 5.6425 -5.6086 3.3292 20 6 7.1418 -7.0825 2.9606 21 7 7.6034 -7.9811 2.1185 22 14 8.0036 -6.8038 4.5943 23 1 7.0589 -7.0814 5.7059 24 1 9.1727 -7.7136 4.6987 25 1 8.4646 -5.3947 4.6767 26 1 -0.3635 -0.0007 1.0276 27 1 -0.3634 0.8904 -0.5132 28 1 -0.3634 -0.8896 -0.5145 29 1 2.0303 2.1590 0.0004 30 1 4.9264 1.5831 2.2935 31 1 6.2430 2.5009 1.7966 32 1 1.6873 -5.0095 0.8912 33 1 1.6852 -5.0102 -0.8887 34 1 3.0927 -6.8468 -0.0898 35 1 4.1247 -5.6081 -0.8440 36 1 4.9890 -7.6051 1.2578 37 1 6.0205 -6.3658 0.5039 38 1 8.3916 -8.4989 2.3456 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850256607.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:08 Heat of formation + Delta-G solvation = -186.245128 kcal Electronic energy + Delta-G solvation = -25973.279602 eV Core-core repulsion = 21717.546163 eV Total energy + Delta-G solvation = -4255.733439 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.085 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.31653 -40.38137 -37.62977 -37.29042 -36.31250 -36.29760 -34.66777 -33.63173 -32.79174 -31.57462 -30.21915 -28.28121 -26.95236 -24.81547 -22.74859 -22.35193 -21.81984 -20.95874 -19.85489 -18.86364 -18.39336 -17.99786 -17.15035 -17.12261 -16.45522 -16.30923 -16.25162 -15.99004 -15.32234 -14.74606 -14.67440 -14.36314 -14.08012 -13.71491 -13.58176 -13.24897 -13.08771 -12.91005 -12.70866 -12.65692 -12.53772 -12.41392 -12.01932 -11.86965 -11.50283 -11.08182 -10.96454 -10.92897 -10.81732 -10.74455 -10.54659 -10.45773 -10.07902 -9.57578 -9.15984 -8.90081 -8.23344 -6.12374 -4.14307 -0.30177 0.06860 1.33021 1.89827 2.45200 2.49346 2.80824 3.11826 3.31755 3.34408 3.38095 4.04796 4.21176 4.30384 4.41131 4.55784 4.65170 4.76063 4.97743 5.05535 5.24219 5.27785 5.32431 5.33136 5.49852 5.57583 5.76152 5.77655 5.81252 5.95161 6.12734 6.23623 6.59232 7.03125 7.38159 7.40022 7.76498 8.10948 8.49382 8.97138 9.50307 10.99206 Molecular weight = 333.09amu Principal moments of inertia in cm(-1) A = 0.010073 B = 0.003205 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2779.148284 B = 8733.641627 C =10829.852687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.105 4.105 3 C -0.093 4.093 4 C -0.548 4.548 5 S 2.736 3.264 6 N -1.244 6.244 7 O -0.933 6.933 8 O -0.940 6.940 9 O -0.083 6.083 10 C 0.000 4.000 11 C 0.547 3.453 12 O -0.479 6.479 13 O -0.324 6.324 14 C 0.074 3.926 15 C 0.060 3.940 16 O -0.392 6.392 17 C 0.195 3.805 18 C -0.517 4.517 19 H 0.066 0.934 20 C 0.057 3.943 21 N -0.899 5.899 22 Si 0.909 3.091 23 H -0.275 1.275 24 H -0.286 1.286 25 H -0.274 1.274 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.090 0.910 29 H 0.181 0.819 30 H 0.421 0.579 31 H 0.426 0.574 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.067 0.933 35 H 0.053 0.947 36 H 0.007 0.993 37 H 0.008 0.992 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.446 20.693 -4.200 24.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.108 4.108 3 C -0.114 4.114 4 C -0.679 4.679 5 S 2.816 3.184 6 N -0.922 5.922 7 O -0.922 6.922 8 O -0.929 6.929 9 O 0.025 5.975 10 C -0.055 4.055 11 C 0.390 3.610 12 O -0.369 6.369 13 O -0.239 6.239 14 C 0.001 3.999 15 C -0.018 4.018 16 O -0.312 6.312 17 C 0.121 3.879 18 C -0.555 4.555 19 H 0.084 0.916 20 C -0.144 4.144 21 N -0.538 5.538 22 Si 0.736 3.264 23 H -0.200 1.200 24 H -0.211 1.211 25 H -0.199 1.199 26 H 0.100 0.900 27 H 0.095 0.905 28 H 0.109 0.891 29 H 0.198 0.802 30 H 0.249 0.751 31 H 0.258 0.742 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.085 0.915 35 H 0.071 0.929 36 H 0.025 0.975 37 H 0.026 0.974 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.057 20.572 -5.028 24.369 hybrid contribution -0.042 -0.478 1.285 1.371 sum -12.099 20.094 -3.744 23.752 Atomic orbital electron populations 1.20529 0.86780 1.04393 1.03712 1.20840 0.98391 0.90067 1.01471 1.21873 0.90267 1.01351 0.97937 1.35826 1.19825 0.91172 1.21090 1.01257 0.71659 0.72948 0.72547 1.52904 1.43092 1.69975 1.26212 1.93681 1.52327 1.69919 1.76274 1.93674 1.82946 1.39624 1.76637 1.84389 1.26944 1.18433 1.67696 1.21422 0.82816 0.92691 1.08565 1.19094 0.84261 0.83731 0.73912 1.90920 1.16814 1.83138 1.46007 1.86800 1.38087 1.16758 1.82215 1.23425 0.97321 0.76079 1.03076 1.22340 0.92851 0.95746 0.90827 1.87913 1.44385 1.64101 1.34764 1.20247 0.82050 0.87977 0.97651 1.20998 1.10899 1.21498 1.02087 0.91580 1.24944 0.96742 0.94867 0.97872 1.69948 1.24106 1.23676 1.36022 0.86376 0.78749 0.78235 0.83004 1.20035 1.21113 1.19941 0.89960 0.90535 0.89103 0.80212 0.75143 0.74229 0.89856 0.89788 0.91479 0.92904 0.97544 0.97372 0.92536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.79 9.81 36.01 0.35 -0.44 16 2 C -0.11 -1.11 6.20 -104.42 -0.65 -1.76 16 3 C -0.09 -0.83 10.54 -39.90 -0.42 -1.25 16 4 C -0.55 -5.80 7.32 29.64 0.22 -5.58 16 5 S 2.74 24.94 6.43 -107.50 -0.69 24.25 16 6 N -1.24 -6.73 9.55 60.35 0.58 -6.16 16 7 O -0.93 -12.84 18.02 -57.25 -1.03 -13.87 16 8 O -0.94 -9.81 17.83 -57.17 -1.02 -10.83 16 9 O -0.08 -1.16 10.67 4.70 0.05 -1.11 16 10 C 0.00 0.00 7.18 -36.85 -0.26 -0.26 16 11 C 0.55 8.19 7.93 34.05 0.27 8.46 16 12 O -0.48 -7.10 14.54 -19.36 -0.28 -7.38 16 13 O -0.32 -5.50 10.21 -44.91 -0.46 -5.96 16 14 C 0.07 1.12 5.86 37.16 0.22 1.34 16 15 C 0.06 1.08 6.33 37.16 0.24 1.31 16 16 O -0.39 -9.47 10.30 -38.80 -0.40 -9.87 16 17 C 0.19 5.34 5.69 36.01 0.20 5.55 16 18 C -0.52 -15.30 9.43 -34.44 -0.32 -15.63 16 19 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 20 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 21 N -0.90 -26.90 13.29 55.43 0.74 -26.16 16 22 Si 0.91 21.86 29.54 -169.99 -5.02 16.84 16 23 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 24 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 26 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.09 0.85 6.45 -51.93 -0.33 0.52 16 29 H 0.18 0.98 8.06 -52.49 -0.42 0.56 16 30 H 0.42 1.53 8.92 -34.47 -0.31 1.22 16 31 H 0.43 1.50 8.96 -34.47 -0.31 1.19 16 32 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 33 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.01 0.19 8.14 -51.93 -0.42 -0.24 16 37 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 38 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 357.07 15.07 5.38 5.38 Total: -1.00 -38.86 357.07 -6.72 -45.58 By element: Atomic # 1 Polarization: 0.30 SS G_CDS: -4.30 Total: -4.00 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: -0.26 Total: -6.70 kcal Atomic # 7 Polarization: -33.64 SS G_CDS: 1.31 Total: -32.32 kcal Atomic # 8 Polarization: -45.89 SS G_CDS: -3.14 Total: -49.03 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Atomic # 16 Polarization: 24.94 SS G_CDS: -0.69 Total: 24.25 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -38.86 -6.72 -45.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850256607.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.664 kcal (2) G-P(sol) polarization free energy of solvation -38.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds