Wall clock time and date at job start Tue Mar 31 2020 17:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42895 * 114.00623 * 2 1 4 4 H 1.09002 * 109.46934 * 29.99650 * 3 2 1 5 5 C 1.53001 * 109.46911 * 270.00066 * 3 2 1 6 6 C 1.52991 * 109.47463 * 149.99896 * 3 2 1 7 7 S 1.81398 * 109.47382 * 299.99702 * 6 3 2 8 8 O 1.42100 * 110.54490 * 291.62676 * 7 6 3 9 9 O 1.42100 * 110.54053 * 68.37647 * 7 6 3 10 10 N 1.65599 * 104.45244 * 180.02562 * 7 6 3 11 11 C 1.39927 * 119.99858 * 60.01763 * 10 7 6 12 12 C 1.38718 * 120.07984 * 35.47761 * 11 10 7 13 13 C 1.38210 * 120.01429 * 179.74600 * 12 11 10 14 14 C 1.38530 * 120.18018 * 0.55656 * 13 12 11 15 15 F 1.35100 * 119.92409 * 179.72130 * 14 13 12 16 16 C 1.38361 * 120.15279 * 359.69947 * 14 13 12 17 17 C 1.38717 * 119.98471 * 0.02562 * 16 14 13 18 18 O 1.35793 * 120.08812 * 179.97438 * 17 16 14 19 19 C 1.34807 * 116.99969 * 5.59256 * 18 17 16 20 20 H 1.07989 * 119.99894 * 354.94119 * 19 18 17 21 21 C 1.38628 * 119.99671 * 174.93879 * 19 18 17 22 22 N 1.31575 * 119.99815 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 120.00416 * 0.02562 * 21 19 18 24 24 H 1.48504 * 109.47173 * 89.99731 * 23 21 19 25 25 H 1.48493 * 109.47156 * 209.99609 * 23 21 19 26 26 H 1.48496 * 109.46924 * 329.99985 * 23 21 19 27 27 H 1.09003 * 109.47300 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47495 * 300.00095 * 1 2 3 29 29 H 1.09000 * 109.47064 * 60.00322 * 1 2 3 30 30 H 1.09003 * 109.47105 * 59.99554 * 5 3 2 31 31 H 1.09002 * 109.46982 * 299.99555 * 5 3 2 32 32 H 1.09005 * 109.47013 * 179.97438 * 5 3 2 33 33 H 1.09002 * 109.47256 * 60.00502 * 6 3 2 34 34 H 1.09005 * 109.46959 * 180.02562 * 6 3 2 35 35 H 0.97000 * 119.99992 * 240.01507 * 10 7 6 36 36 H 1.07995 * 119.99031 * 0.02562 * 12 11 10 37 37 H 1.07995 * 119.91084 * 180.27863 * 13 12 11 38 38 H 1.08006 * 120.00602 * 180.02562 * 16 14 13 39 39 H 0.97001 * 120.00393 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 1 1.3450 1.9993 0.5138 5 6 2.2177 1.7712 -1.4425 6 6 3.3589 1.2631 0.7212 7 16 3.1130 0.7109 2.4315 8 8 2.4092 1.6949 3.1770 9 8 2.7175 -0.6536 2.4629 10 7 4.6330 0.7114 3.0886 11 6 5.3720 1.8984 3.1413 12 6 4.7304 3.1074 3.3672 13 6 5.4622 4.2784 3.4243 14 6 6.8356 4.2508 3.2449 15 9 7.5452 5.3993 3.2961 16 6 7.4823 3.0496 3.0139 17 6 6.7549 1.8696 2.9610 18 8 7.3874 0.6896 2.7338 19 6 8.7343 0.7169 2.6836 20 1 9.2577 1.6599 2.7394 21 6 9.4473 -0.4655 2.5603 22 7 10.7619 -0.4388 2.5107 23 14 8.5419 -2.0965 2.4630 24 1 8.2481 -2.4157 1.0428 25 1 9.3884 -3.1681 3.0463 26 1 7.2694 -2.0023 3.2226 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.2569 1.8013 -1.9564 31 1 2.8830 1.0772 -1.9563 32 1 2.6608 2.7671 -1.4425 33 1 4.0242 0.5692 0.2074 34 1 3.8021 2.2590 0.7216 35 1 5.0111 -0.1112 3.4369 36 1 3.6593 3.1330 3.5030 37 1 4.9616 5.2181 3.6047 38 1 8.5532 3.0307 2.8748 39 1 11.2609 -1.2661 2.4240 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193334708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:07:01 Heat of formation + Delta-G solvation = -157.076821 kcal Electronic energy + Delta-G solvation = -27331.743937 eV Core-core repulsion = 23089.648120 eV Total energy + Delta-G solvation = -4242.095817 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.092 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.42011 -39.64616 -38.71830 -37.31993 -36.70058 -35.89194 -34.39113 -33.18505 -32.59544 -29.75692 -28.15247 -28.06148 -26.80568 -25.54491 -22.52852 -21.90578 -21.78850 -19.34462 -18.44913 -18.17986 -17.59599 -17.26714 -17.04151 -16.54626 -15.70140 -15.51663 -15.31771 -15.18497 -15.14027 -14.93230 -14.20904 -14.05693 -13.73097 -13.56963 -13.51621 -13.04029 -12.93196 -12.82844 -12.63123 -12.51850 -12.28699 -12.06066 -11.97408 -11.81456 -11.71446 -11.47234 -11.18952 -11.04861 -10.87062 -10.71647 -10.45400 -10.23789 -9.92812 -9.74993 -9.08677 -8.20439 -7.47738 -6.62499 -4.30432 0.23947 1.61301 1.83012 2.70769 3.10409 3.14325 3.25375 3.30662 3.69933 3.99786 4.05144 4.22830 4.34084 4.42050 4.56266 4.80303 4.81768 4.88086 5.00728 5.05481 5.11581 5.22866 5.36511 5.38429 5.46647 5.47913 5.58021 5.65432 5.79211 5.87737 6.24627 6.39614 6.59561 6.68386 6.78709 6.79527 7.14010 7.33383 7.55081 7.77820 8.69960 9.24111 10.43763 Molecular weight = 333.09amu Principal moments of inertia in cm(-1) A = 0.010447 B = 0.004980 C = 0.003861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2679.564746 B = 5621.028856 C = 7249.461182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.381 6.381 3 C 0.095 3.905 4 H 0.077 0.923 5 C -0.166 4.166 6 C -0.631 4.631 7 S 2.609 3.391 8 O -0.956 6.956 9 O -0.942 6.942 10 N -1.040 6.040 11 C 0.062 3.938 12 C -0.105 4.105 13 C -0.213 4.213 14 C 0.132 3.868 15 F -0.147 7.147 16 C -0.243 4.243 17 C 0.169 3.831 18 O -0.199 6.199 19 C -0.395 4.395 20 H 0.111 0.889 21 C 0.069 3.931 22 N -0.866 5.866 23 Si 0.901 3.099 24 H -0.270 1.270 25 H -0.279 1.279 26 H -0.257 1.257 27 H 0.093 0.907 28 H 0.045 0.955 29 H 0.046 0.954 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.147 0.853 34 H 0.149 0.851 35 H 0.427 0.573 36 H 0.163 0.837 37 H 0.129 0.871 38 H 0.151 0.849 39 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.304 4.614 -4.934 17.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.300 6.300 3 C 0.036 3.964 4 H 0.095 0.905 5 C -0.224 4.224 6 C -0.759 4.759 7 S 2.703 3.297 8 O -0.946 6.946 9 O -0.932 6.932 10 N -0.791 5.791 11 C -0.035 4.035 12 C -0.127 4.127 13 C -0.233 4.233 14 C 0.112 3.888 15 F -0.125 7.125 16 C -0.263 4.263 17 C 0.112 3.888 18 O -0.103 6.103 19 C -0.470 4.470 20 H 0.128 0.872 21 C -0.136 4.136 22 N -0.502 5.502 23 Si 0.726 3.274 24 H -0.195 1.195 25 H -0.204 1.204 26 H -0.180 1.180 27 H 0.112 0.888 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.165 0.835 34 H 0.167 0.833 35 H 0.265 0.735 36 H 0.180 0.820 37 H 0.147 0.853 38 H 0.168 0.832 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -16.914 3.939 -4.608 17.967 hybrid contribution 0.749 -0.361 -0.451 0.946 sum -16.165 3.577 -5.059 17.312 Atomic orbital electron populations 1.22922 0.80331 1.03645 1.00262 1.88068 1.20379 1.26487 1.95112 1.21713 0.91374 0.85808 0.97540 0.90511 1.22211 1.02785 1.02326 0.95097 1.30704 1.05559 1.14736 1.24948 1.05217 0.72881 0.74656 0.76958 1.93515 1.71352 1.62365 1.67412 1.93604 1.80040 1.32981 1.86573 1.52980 1.36607 1.15846 1.73692 1.16627 0.88754 0.85641 1.12445 1.21347 1.01887 0.90033 0.99389 1.20496 0.91761 0.98995 1.12089 1.17499 0.89436 0.81181 1.00689 1.91443 1.78934 1.48248 1.93908 1.21075 1.02395 0.90417 1.12457 1.18603 0.90006 0.86088 0.94133 1.83552 1.22788 1.26585 1.77340 1.20800 0.76456 0.97318 1.52392 0.87216 1.24484 0.94931 0.99007 0.95220 1.69639 1.05125 1.29746 1.45724 0.86255 0.80337 0.81340 0.79507 1.19518 1.20404 1.18049 0.88821 0.93615 0.93535 0.91863 0.91061 0.90892 0.83489 0.83277 0.73513 0.81972 0.85259 0.83167 0.90632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 10.82 101.05 1.09 1.32 16 2 O -0.38 -4.77 9.39 -41.98 -0.39 -5.16 16 3 C 0.10 1.03 2.77 -26.74 -0.07 0.96 16 4 H 0.08 0.70 7.79 -51.93 -0.40 0.30 16 5 C -0.17 -1.45 9.53 37.16 0.35 -1.10 16 6 C -0.63 -7.57 5.62 37.15 0.21 -7.36 16 7 S 2.61 39.19 5.02 -107.50 -0.54 38.65 16 8 O -0.96 -15.19 15.06 -57.54 -0.87 -16.05 16 9 O -0.94 -16.65 17.41 -61.89 -1.08 -17.73 16 10 N -1.04 -17.29 5.54 32.54 0.18 -17.11 16 11 C 0.06 1.11 6.15 -83.52 -0.51 0.59 16 12 C -0.11 -1.68 9.25 -39.41 -0.36 -2.05 16 13 C -0.21 -3.35 10.02 -39.48 -0.40 -3.74 16 14 C 0.13 2.35 7.29 -39.43 -0.29 2.06 16 15 F -0.15 -2.56 17.26 2.25 0.04 -2.52 16 16 C -0.24 -4.84 9.14 -39.36 -0.36 -5.20 16 17 C 0.17 3.48 6.66 -38.94 -0.26 3.22 16 18 O -0.20 -4.66 8.16 -0.02 0.00 -4.66 16 19 C -0.39 -10.20 9.95 30.88 0.31 -9.89 16 20 H 0.11 2.91 5.44 -52.49 -0.29 2.63 16 21 C 0.07 1.81 5.49 -17.52 -0.10 1.71 16 22 N -0.87 -23.57 13.96 55.48 0.77 -22.80 16 23 Si 0.90 20.22 28.62 -169.99 -4.86 15.35 16 24 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 25 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 26 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 27 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.05 0.38 8.09 -51.93 -0.42 -0.04 16 29 H 0.05 0.32 7.87 -51.93 -0.41 -0.09 16 30 H 0.06 0.46 7.87 -51.93 -0.41 0.05 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.15 1.72 8.14 -51.92 -0.42 1.30 16 34 H 0.15 1.51 8.14 -51.92 -0.42 1.09 16 35 H 0.43 7.14 8.68 -34.47 -0.30 6.84 16 36 H 0.16 2.41 5.18 -52.49 -0.27 2.14 16 37 H 0.13 1.68 8.06 -52.49 -0.42 1.26 16 38 H 0.15 3.17 5.64 -52.48 -0.30 2.87 16 39 H 0.28 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 348.07 15.07 5.25 5.25 Total: -1.00 -30.59 348.07 -6.36 -36.94 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -4.47 Total: 9.32 kcal Atomic # 6 Polarization: -19.10 SS G_CDS: -0.39 Total: -19.49 kcal Atomic # 7 Polarization: -40.86 SS G_CDS: 0.96 Total: -39.90 kcal Atomic # 8 Polarization: -41.27 SS G_CDS: -2.34 Total: -43.60 kcal Atomic # 9 Polarization: -2.56 SS G_CDS: 0.04 Total: -2.52 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -4.86 Total: 15.35 kcal Atomic # 16 Polarization: 39.19 SS G_CDS: -0.54 Total: 38.65 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.59 -6.36 -36.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193334708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.132 kcal (2) G-P(sol) polarization free energy of solvation -30.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds