Wall clock time and date at job start Tue Mar 31 2020 17:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42895 * 114.00623 * 2 1 4 4 H 1.09002 * 109.46934 * 29.99650 * 3 2 1 5 5 C 1.53001 * 109.46911 * 270.00066 * 3 2 1 6 6 C 1.52991 * 109.47463 * 149.99896 * 3 2 1 7 7 S 1.81398 * 109.47382 * 299.99702 * 6 3 2 8 8 O 1.42100 * 110.54490 * 291.62676 * 7 6 3 9 9 O 1.42100 * 110.54053 * 68.37647 * 7 6 3 10 10 N 1.65599 * 104.45244 * 180.02562 * 7 6 3 11 11 C 1.39927 * 119.99858 * 60.01763 * 10 7 6 12 12 C 1.38718 * 120.07984 * 35.47761 * 11 10 7 13 13 C 1.38210 * 120.01429 * 179.74600 * 12 11 10 14 14 C 1.38530 * 120.18018 * 0.55656 * 13 12 11 15 15 F 1.35100 * 119.92409 * 179.72130 * 14 13 12 16 16 C 1.38361 * 120.15279 * 359.69947 * 14 13 12 17 17 C 1.38717 * 119.98471 * 0.02562 * 16 14 13 18 18 O 1.35793 * 120.08812 * 179.97438 * 17 16 14 19 19 C 1.34807 * 116.99969 * 5.59256 * 18 17 16 20 20 H 1.07989 * 119.99894 * 354.94119 * 19 18 17 21 21 C 1.38628 * 119.99671 * 174.93879 * 19 18 17 22 22 N 1.31575 * 119.99815 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 120.00416 * 0.02562 * 21 19 18 24 24 H 1.48504 * 109.47173 * 89.99731 * 23 21 19 25 25 H 1.48493 * 109.47156 * 209.99609 * 23 21 19 26 26 H 1.48496 * 109.46924 * 329.99985 * 23 21 19 27 27 H 1.09003 * 109.47300 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47495 * 300.00095 * 1 2 3 29 29 H 1.09000 * 109.47064 * 60.00322 * 1 2 3 30 30 H 1.09003 * 109.47105 * 59.99554 * 5 3 2 31 31 H 1.09002 * 109.46982 * 299.99555 * 5 3 2 32 32 H 1.09005 * 109.47013 * 179.97438 * 5 3 2 33 33 H 1.09002 * 109.47256 * 60.00502 * 6 3 2 34 34 H 1.09005 * 109.46959 * 180.02562 * 6 3 2 35 35 H 0.97000 * 119.99992 * 240.01507 * 10 7 6 36 36 H 1.07995 * 119.99031 * 0.02562 * 12 11 10 37 37 H 1.07995 * 119.91084 * 180.27863 * 13 12 11 38 38 H 1.08006 * 120.00602 * 180.02562 * 16 14 13 39 39 H 0.97001 * 120.00393 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 1 1.3450 1.9993 0.5138 5 6 2.2177 1.7712 -1.4425 6 6 3.3589 1.2631 0.7212 7 16 3.1130 0.7109 2.4315 8 8 2.4092 1.6949 3.1770 9 8 2.7175 -0.6536 2.4629 10 7 4.6330 0.7114 3.0886 11 6 5.3720 1.8984 3.1413 12 6 4.7304 3.1074 3.3672 13 6 5.4622 4.2784 3.4243 14 6 6.8356 4.2508 3.2449 15 9 7.5452 5.3993 3.2961 16 6 7.4823 3.0496 3.0139 17 6 6.7549 1.8696 2.9610 18 8 7.3874 0.6896 2.7338 19 6 8.7343 0.7169 2.6836 20 1 9.2577 1.6599 2.7394 21 6 9.4473 -0.4655 2.5603 22 7 10.7619 -0.4388 2.5107 23 14 8.5419 -2.0965 2.4630 24 1 8.2481 -2.4157 1.0428 25 1 9.3884 -3.1681 3.0463 26 1 7.2694 -2.0023 3.2226 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.2569 1.8013 -1.9564 31 1 2.8830 1.0772 -1.9563 32 1 2.6608 2.7671 -1.4425 33 1 4.0242 0.5692 0.2074 34 1 3.8021 2.2590 0.7216 35 1 5.0111 -0.1112 3.4369 36 1 3.6593 3.1330 3.5030 37 1 4.9616 5.2181 3.6047 38 1 8.5532 3.0307 2.8748 39 1 11.2609 -1.2661 2.4240 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193334708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:07:00 Heat of formation + Delta-G solvation = -178.900777 kcal Electronic energy + Delta-G solvation = -27332.690295 eV Core-core repulsion = 23089.648120 eV Total energy + Delta-G solvation = -4243.042175 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.092 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.84871 -41.21157 -39.51591 -38.77383 -38.09204 -37.15417 -35.78042 -34.49610 -34.00465 -31.26889 -29.62994 -28.87386 -27.51639 -27.33841 -24.00779 -23.27670 -22.75992 -20.59549 -20.17575 -19.73139 -18.86183 -18.47574 -18.07909 -17.66672 -17.25683 -16.84134 -16.62778 -16.46679 -16.24435 -15.89501 -15.80367 -15.68123 -15.30422 -15.06844 -14.41365 -14.36038 -14.18634 -13.91539 -13.78814 -13.68377 -13.43331 -13.32244 -13.24890 -13.10413 -12.92061 -12.72119 -12.49420 -12.23160 -12.13773 -11.99506 -11.88517 -11.63521 -11.47939 -10.96432 -10.73722 -9.72169 -8.97784 -8.54741 -6.27977 -0.93414 0.13564 0.36267 1.32401 1.34184 1.47374 1.49111 2.22854 2.45618 2.53863 2.58643 2.78806 2.97723 3.12633 3.35045 3.44073 3.75694 3.85746 3.96365 4.05207 4.15090 4.19432 4.26590 4.40812 4.50582 4.58770 4.76680 4.81033 4.85638 4.91241 5.02343 5.14250 5.20948 5.24076 5.25551 5.60758 5.72546 5.83344 6.04994 6.06119 6.78244 7.43163 8.55860 Molecular weight = 333.09amu Principal moments of inertia in cm(-1) A = 0.010447 B = 0.004980 C = 0.003861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2679.564746 B = 5621.028856 C = 7249.461182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.411 6.411 3 C 0.085 3.915 4 H 0.097 0.903 5 C -0.164 4.164 6 C -0.618 4.618 7 S 2.612 3.388 8 O -0.966 6.966 9 O -0.971 6.971 10 N -1.048 6.048 11 C 0.078 3.922 12 C -0.100 4.100 13 C -0.177 4.177 14 C 0.124 3.876 15 F -0.144 7.144 16 C -0.251 4.251 17 C 0.143 3.857 18 O -0.220 6.220 19 C -0.400 4.400 20 H 0.087 0.913 21 C 0.020 3.980 22 N -0.915 5.915 23 Si 0.954 3.046 24 H -0.264 1.264 25 H -0.271 1.271 26 H -0.253 1.253 27 H 0.097 0.903 28 H 0.050 0.950 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.061 0.939 32 H 0.087 0.913 33 H 0.149 0.851 34 H 0.172 0.828 35 H 0.425 0.575 36 H 0.185 0.815 37 H 0.171 0.829 38 H 0.128 0.872 39 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.502 6.137 -5.523 21.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.331 6.331 3 C 0.026 3.974 4 H 0.115 0.885 5 C -0.223 4.223 6 C -0.750 4.750 7 S 2.710 3.290 8 O -0.956 6.956 9 O -0.962 6.962 10 N -0.797 5.797 11 C -0.019 4.019 12 C -0.121 4.121 13 C -0.196 4.196 14 C 0.103 3.897 15 F -0.123 7.123 16 C -0.272 4.272 17 C 0.089 3.911 18 O -0.126 6.126 19 C -0.476 4.476 20 H 0.104 0.896 21 C -0.180 4.180 22 N -0.554 5.554 23 Si 0.776 3.224 24 H -0.189 1.189 25 H -0.196 1.196 26 H -0.176 1.176 27 H 0.116 0.884 28 H 0.069 0.931 29 H 0.089 0.911 30 H 0.098 0.902 31 H 0.080 0.920 32 H 0.106 0.894 33 H 0.167 0.833 34 H 0.190 0.810 35 H 0.262 0.738 36 H 0.201 0.799 37 H 0.189 0.811 38 H 0.146 0.854 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -20.150 5.493 -5.150 21.511 hybrid contribution 1.479 -0.542 -0.255 1.596 sum -18.672 4.951 -5.405 20.059 Atomic orbital electron populations 1.23167 0.78881 1.04548 1.01708 1.88030 1.22172 1.27586 1.95351 1.21990 0.90724 0.85864 0.98868 0.88535 1.22226 1.03733 1.02750 0.93568 1.30640 1.07135 1.15855 1.21340 1.05027 0.71964 0.73995 0.78043 1.93482 1.71289 1.62043 1.68779 1.93571 1.80242 1.34834 1.87511 1.53153 1.36644 1.15441 1.74502 1.16800 0.87697 0.86833 1.10616 1.21647 1.02804 0.89156 0.98508 1.20962 0.90480 1.00534 1.07647 1.17547 0.90337 0.80451 1.01332 1.91454 1.79122 1.47777 1.93912 1.21070 1.01645 0.91660 1.12856 1.18977 0.91182 0.85584 0.95332 1.83517 1.21156 1.27761 1.80174 1.20688 0.77813 0.96616 1.52494 0.89584 1.25175 0.95532 1.01970 0.95305 1.69719 1.06414 1.30579 1.48698 0.85456 0.79383 0.77841 0.79742 1.18903 1.19591 1.17629 0.88408 0.93105 0.91135 0.90194 0.91956 0.89396 0.83272 0.81014 0.73847 0.79861 0.81106 0.85439 0.90415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.20 10.82 113.37 1.23 1.42 16 2 O -0.41 -9.40 9.39 -142.53 -1.34 -10.74 16 3 C 0.08 1.57 2.77 30.59 0.08 1.65 16 4 H 0.10 1.38 7.79 -2.39 -0.02 1.36 16 5 C -0.16 -2.32 9.53 71.98 0.69 -1.63 16 6 C -0.62 -13.08 5.62 71.98 0.40 -12.68 16 7 S 2.61 73.26 5.02 -56.49 -0.28 72.97 16 8 O -0.97 -27.83 15.06 -127.65 -1.92 -29.75 16 9 O -0.97 -33.44 17.41 -123.49 -2.15 -35.59 16 10 N -1.05 -33.46 5.54 -50.97 -0.28 -33.74 16 11 C 0.08 2.63 6.15 38.27 0.24 2.86 16 12 C -0.10 -2.82 9.25 22.38 0.21 -2.61 16 13 C -0.18 -4.77 10.02 22.33 0.22 -4.54 16 14 C 0.12 4.13 7.29 22.37 0.16 4.30 16 15 F -0.14 -4.75 17.26 44.97 0.78 -3.97 16 16 C -0.25 -10.12 9.14 22.41 0.20 -9.91 16 17 C 0.14 5.91 6.66 22.69 0.15 6.06 16 18 O -0.22 -10.56 8.16 -22.98 -0.19 -10.75 16 19 C -0.40 -21.67 9.95 67.91 0.68 -20.99 16 20 H 0.09 4.91 5.44 -2.92 -0.02 4.89 16 21 C 0.02 1.10 5.49 84.82 0.47 1.57 16 22 N -0.91 -52.07 13.96 21.61 0.30 -51.77 16 23 Si 0.95 42.49 28.62 68.60 1.96 44.46 16 24 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 25 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 26 H -0.25 -10.90 7.11 99.48 0.71 -10.20 16 27 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.05 0.72 8.09 -2.39 -0.02 0.70 16 29 H 0.07 0.74 7.87 -2.39 -0.02 0.72 16 30 H 0.08 0.87 7.87 -2.39 -0.02 0.85 16 31 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 33 H 0.15 3.19 8.14 -2.39 -0.02 3.18 16 34 H 0.17 2.81 8.14 -2.39 -0.02 2.79 16 35 H 0.43 14.06 8.68 -96.75 -0.84 13.22 16 36 H 0.18 4.57 5.18 -2.91 -0.02 4.56 16 37 H 0.17 3.33 8.06 -2.91 -0.02 3.31 16 38 H 0.13 5.71 5.64 -2.91 -0.02 5.70 16 39 H 0.29 15.02 8.31 -92.71 -0.77 14.25 16 Total: -1.00 -68.14 348.07 1.87 -66.27 By element: Atomic # 1 Polarization: 26.85 SS G_CDS: 0.27 Total: 27.12 kcal Atomic # 6 Polarization: -39.24 SS G_CDS: 4.73 Total: -34.51 kcal Atomic # 7 Polarization: -85.53 SS G_CDS: 0.02 Total: -85.51 kcal Atomic # 8 Polarization: -81.23 SS G_CDS: -5.60 Total: -86.82 kcal Atomic # 9 Polarization: -4.75 SS G_CDS: 0.78 Total: -3.97 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 1.96 Total: 44.46 kcal Atomic # 16 Polarization: 73.26 SS G_CDS: -0.28 Total: 72.97 kcal Total: -68.14 1.87 -66.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193334708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.630 kcal (2) G-P(sol) polarization free energy of solvation -68.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds