Wall clock time and date at job start Tue Mar 31 2020 17:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 120.00033 * 2 1 4 4 H 1.48493 * 109.47488 * 274.13912 * 3 2 1 5 5 H 1.48500 * 109.47240 * 34.14671 * 3 2 1 6 6 H 1.48507 * 109.46955 * 154.14084 * 3 2 1 7 7 C 1.38810 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00117 * 170.41938 * 7 2 1 9 9 N 1.36942 * 120.00119 * 350.42302 * 7 2 1 10 10 C 1.47016 * 125.64812 * 169.94192 * 9 7 2 11 11 C 1.54332 * 107.26845 * 178.97499 * 10 9 7 12 12 H 1.08996 * 110.72283 * 96.34957 * 11 10 9 13 13 N 1.46506 * 110.71965 * 219.44285 * 11 10 9 14 14 C 1.34777 * 119.99624 * 273.55127 * 13 11 10 15 15 O 1.21614 * 120.00330 * 359.97438 * 14 13 11 16 16 C 1.47368 * 119.99506 * 180.02562 * 14 13 11 17 17 C 1.38764 * 120.55677 * 359.97438 * 16 14 13 18 18 N 1.31897 * 121.12645 * 179.97438 * 17 16 14 19 19 C 1.31673 * 122.21518 * 0.02562 * 18 17 16 20 20 C 1.39286 * 121.14103 * 0.02562 * 19 18 17 21 21 S 1.75885 * 131.39474 * 179.97438 * 20 19 18 22 22 C 1.75547 * 91.52545 * 180.02562 * 21 20 19 23 23 C 1.32480 * 110.79442 * 359.97438 * 22 21 20 24 24 C 1.40013 * 115.78181 * 359.72932 * 23 22 21 25 25 C 1.55156 * 102.94007 * 337.80442 * 11 10 9 26 26 H 1.09008 * 110.99883 * 153.58033 * 25 11 10 27 27 O 1.42898 * 111.00584 * 277.42630 * 25 11 10 28 28 C 1.47423 * 125.64597 * 349.98052 * 9 7 2 29 29 H 0.97007 * 120.00015 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.88743 * 59.56216 * 10 9 7 31 31 H 1.08998 * 110.01539 * 298.45912 * 10 9 7 32 32 H 0.96994 * 120.00118 * 93.54352 * 13 11 10 33 33 H 1.08005 * 119.43805 * 0.02562 * 17 16 14 34 34 H 1.08000 * 119.42690 * 179.97438 * 19 18 17 35 35 H 1.08000 * 124.60304 * 179.97438 * 22 21 20 36 36 H 1.08001 * 122.10751 * 180.02562 * 23 22 21 37 37 H 0.96701 * 113.99974 * 180.02562 * 27 25 11 38 38 H 1.09002 * 110.36526 * 322.93412 * 28 9 7 39 39 H 1.09000 * 110.36862 * 85.25423 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4102 2.0970 -1.3963 5 1 1.4943 2.6258 0.7859 6 1 3.5888 1.4164 0.6107 7 6 2.0102 -1.2021 -0.0005 8 1 3.0790 -1.2086 -0.1562 9 7 1.3398 -2.3799 0.1962 10 6 1.9019 -3.7263 0.0155 11 6 0.7930 -4.7378 0.3749 12 1 0.2745 -5.0764 -0.5220 13 7 1.3485 -5.8761 1.1111 14 6 1.8548 -6.9299 0.4405 15 8 1.8500 -6.9361 -0.7756 16 6 2.4130 -8.0752 1.1810 17 6 2.4238 -8.0805 2.5686 18 7 2.9202 -9.0997 3.2427 19 6 3.4278 -10.1569 2.6440 20 6 3.4653 -10.2492 1.2547 21 16 4.0701 -11.5108 0.1888 22 6 3.6180 -10.5894 -1.2354 23 6 3.0620 -9.4368 -0.8929 24 6 2.9473 -9.2008 0.4824 25 6 -0.1542 -3.9075 1.2809 26 1 -1.1724 -4.2945 1.2400 27 8 0.3246 -3.8728 2.6269 28 6 -0.0653 -2.5077 0.6236 29 1 -0.4850 0.8401 0.0004 30 1 2.7570 -3.8631 0.6775 31 1 2.2094 -3.8662 -1.0208 32 1 1.3521 -5.8713 2.0810 33 1 2.0181 -7.2359 3.1058 34 1 3.8227 -10.9660 3.2405 35 1 3.7723 -10.9176 -2.2527 36 1 2.7145 -8.7261 -1.6282 37 1 -0.2351 -3.3655 3.2305 38 1 -0.3134 -1.7320 1.3481 39 1 -0.7306 -2.4501 -0.2378 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083722730.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:36 Heat of formation + Delta-G solvation = 13.205278 kcal Electronic energy + Delta-G solvation = -25705.053346 eV Core-core repulsion = 21933.403491 eV Total energy + Delta-G solvation = -3771.649855 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 333.093 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.02620 -39.35088 -37.82018 -36.58883 -34.80202 -34.09880 -32.28299 -31.30597 -30.59837 -28.54781 -27.14571 -25.04832 -24.78664 -24.04514 -21.35358 -21.20173 -20.59140 -19.86363 -18.62666 -17.67862 -17.17815 -16.80832 -16.54884 -16.09346 -15.32617 -15.17765 -14.89035 -14.63463 -14.37553 -14.30821 -14.06069 -13.93378 -13.18869 -12.93558 -12.92156 -12.61296 -12.51171 -12.29035 -11.92739 -11.39622 -11.24862 -11.04882 -10.84777 -10.68935 -10.49830 -10.36649 -10.16706 -10.12301 -9.86447 -9.63830 -9.36608 -9.31950 -8.84045 -8.64871 -8.18157 -6.83792 -5.79583 -3.11042 -0.02115 0.46520 1.08481 1.52637 2.06524 2.75027 3.15575 3.38249 3.44149 3.46631 3.61106 3.99557 4.21432 4.41583 4.43176 4.49833 4.61312 4.79655 4.99149 5.06720 5.26365 5.28920 5.31580 5.43966 5.61037 5.66623 5.84267 5.86286 5.94954 6.04567 6.12618 6.19897 6.44599 6.69145 6.88073 7.23886 7.37915 7.48069 7.64616 7.69930 8.02579 8.20997 8.28391 9.14163 9.75933 10.41597 11.33998 Molecular weight = 333.09amu Principal moments of inertia in cm(-1) A = 0.022882 B = 0.002641 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.373480 B =10600.099409 C =11035.945261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.008 4.008 3 Si 0.912 3.088 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.223 4.223 8 H 0.076 0.924 9 N -0.595 5.595 10 C 0.132 3.868 11 C 0.144 3.856 12 H 0.103 0.897 13 N -0.699 5.699 14 C 0.559 3.441 15 O -0.534 6.534 16 C -0.143 4.143 17 C 0.126 3.874 18 N -0.474 5.474 19 C 0.177 3.823 20 C -0.217 4.217 21 S 0.114 5.886 22 C -0.172 4.172 23 C -0.121 4.121 24 C 0.017 3.983 25 C 0.066 3.934 26 H 0.062 0.938 27 O -0.562 6.562 28 C 0.149 3.851 29 H 0.253 0.747 30 H 0.029 0.971 31 H 0.030 0.970 32 H 0.407 0.593 33 H 0.167 0.833 34 H 0.165 0.835 35 H 0.175 0.825 36 H 0.170 0.830 37 H 0.380 0.620 38 H 0.078 0.922 39 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.082 -22.775 4.273 23.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.204 4.204 3 Si 0.743 3.257 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.352 4.352 8 H 0.094 0.906 9 N -0.322 5.322 10 C 0.005 3.995 11 C 0.039 3.961 12 H 0.121 0.879 13 N -0.350 5.350 14 C 0.345 3.655 15 O -0.412 6.412 16 C -0.150 4.150 17 C -0.027 4.027 18 N -0.183 5.183 19 C 0.009 3.991 20 C -0.335 4.335 21 S 0.376 5.624 22 C -0.308 4.308 23 C -0.150 4.150 24 C 0.000 4.000 25 C 0.006 3.994 26 H 0.080 0.920 27 O -0.368 6.368 28 C 0.023 3.977 29 H 0.063 0.937 30 H 0.047 0.953 31 H 0.048 0.952 32 H 0.244 0.756 33 H 0.184 0.816 34 H 0.182 0.818 35 H 0.193 0.807 36 H 0.187 0.813 37 H 0.228 0.772 38 H 0.096 0.904 39 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 4.146 -24.213 4.210 24.924 hybrid contribution -0.646 2.623 -0.573 2.762 sum 3.499 -21.590 3.638 22.172 Atomic orbital electron populations 1.69915 1.04965 1.25249 1.56893 1.24794 0.95670 0.97809 1.02152 0.86096 0.78768 0.83330 0.77541 1.21597 1.21609 1.20588 1.19033 0.91223 0.82592 1.42323 0.90582 1.44257 1.09040 0.99717 1.79137 1.21593 0.94326 0.85513 0.98104 1.22192 0.94986 0.84459 0.94457 0.87874 1.45765 1.60712 1.17659 1.10907 1.17846 0.78333 0.82039 0.87293 1.90735 1.56840 1.80503 1.13128 1.20903 1.03989 0.95443 0.94645 1.22834 0.93690 0.96279 0.89909 1.67757 1.10248 1.00722 1.39526 1.22390 0.92496 0.95480 0.88684 1.23864 1.09282 1.00751 0.99560 1.84137 1.63646 1.19486 0.95128 1.25597 1.04271 0.98148 1.02779 1.20337 1.01003 0.98348 0.95337 1.18275 0.95798 0.92538 0.93383 1.23613 0.94678 0.98687 0.82453 0.92006 1.86238 1.55239 1.76301 1.19032 1.22070 0.86917 0.91013 0.97681 0.93687 0.95268 0.95250 0.75604 0.81611 0.81753 0.80727 0.81298 0.77222 0.90371 0.94474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.44 10.68 55.49 0.59 -25.85 16 2 C -0.01 -0.23 5.40 -17.43 -0.09 -0.32 16 3 Si 0.91 22.02 29.56 -169.99 -5.03 16.99 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.22 -6.26 10.24 -15.06 -0.15 -6.41 16 8 H 0.08 2.10 7.85 -52.48 -0.41 1.69 16 9 N -0.59 -15.13 3.39 -170.07 -0.58 -15.71 16 10 C 0.13 2.89 6.99 -3.06 -0.02 2.87 16 11 C 0.14 2.58 3.12 -66.09 -0.21 2.37 16 12 H 0.10 1.88 7.69 -51.93 -0.40 1.48 16 13 N -0.70 -10.59 5.04 -53.11 -0.27 -10.85 16 14 C 0.56 8.72 7.76 -12.54 -0.10 8.62 16 15 O -0.53 -9.71 14.19 5.27 0.07 -9.63 16 16 C -0.14 -1.91 5.94 -104.21 -0.62 -2.53 16 17 C 0.13 1.48 10.67 -17.33 -0.18 1.30 16 18 N -0.47 -5.45 10.32 -12.88 -0.13 -5.58 16 19 C 0.18 1.75 11.20 -17.23 -0.19 1.55 16 20 C -0.22 -2.31 6.52 -38.48 -0.25 -2.56 16 21 S 0.11 0.94 23.29 -107.50 -2.50 -1.57 16 22 C -0.17 -1.54 11.10 28.82 0.32 -1.22 16 23 C -0.12 -1.44 9.43 -40.83 -0.39 -1.83 16 24 C 0.02 0.21 5.88 -106.74 -0.63 -0.41 16 25 C 0.07 1.14 4.28 -24.58 -0.11 1.03 16 26 H 0.06 0.92 8.14 -51.92 -0.42 0.49 16 27 O -0.56 -8.84 12.23 -35.23 -0.43 -9.27 16 28 C 0.15 3.39 5.16 -2.53 -0.01 3.38 16 29 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 30 H 0.03 0.66 8.03 -51.93 -0.42 0.24 16 31 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.41 5.43 5.60 -40.82 -0.23 5.20 16 33 H 0.17 1.63 6.37 -52.48 -0.33 1.30 16 34 H 0.17 1.07 8.06 -52.49 -0.42 0.64 16 35 H 0.18 1.06 8.06 -52.49 -0.42 0.63 16 36 H 0.17 2.23 6.28 -52.49 -0.33 1.90 16 37 H 0.38 4.66 9.12 45.56 0.42 5.07 16 38 H 0.08 1.94 6.94 -51.93 -0.36 1.58 16 39 H 0.04 0.91 8.07 -51.93 -0.42 0.50 16 LS Contribution 340.39 15.07 5.13 5.13 Total: -1.00 -33.16 340.39 -9.08 -42.24 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -3.31 Total: 8.27 kcal Atomic # 6 Polarization: 8.46 SS G_CDS: -2.63 Total: 5.83 kcal Atomic # 7 Polarization: -57.61 SS G_CDS: -0.38 Total: -57.99 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: -0.36 Total: -18.90 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.03 Total: 16.99 kcal Atomic # 16 Polarization: 0.94 SS G_CDS: -2.50 Total: -1.57 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.16 -9.08 -42.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083722730.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.449 kcal (2) G-P(sol) polarization free energy of solvation -33.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds