Wall clock time and date at job start Tue Mar 31 2020 17:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 120.00033 * 2 1 4 4 H 1.48493 * 109.47488 * 274.13912 * 3 2 1 5 5 H 1.48500 * 109.47240 * 34.14671 * 3 2 1 6 6 H 1.48507 * 109.46955 * 154.14084 * 3 2 1 7 7 C 1.38810 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00117 * 170.41938 * 7 2 1 9 9 N 1.36942 * 120.00119 * 350.42302 * 7 2 1 10 10 C 1.47016 * 125.64812 * 169.94192 * 9 7 2 11 11 C 1.54332 * 107.26845 * 178.97499 * 10 9 7 12 12 H 1.08996 * 110.72283 * 96.34957 * 11 10 9 13 13 N 1.46506 * 110.71965 * 219.44285 * 11 10 9 14 14 C 1.34777 * 119.99624 * 273.55127 * 13 11 10 15 15 O 1.21614 * 120.00330 * 359.97438 * 14 13 11 16 16 C 1.47368 * 119.99506 * 180.02562 * 14 13 11 17 17 C 1.38764 * 120.55677 * 359.97438 * 16 14 13 18 18 N 1.31897 * 121.12645 * 179.97438 * 17 16 14 19 19 C 1.31673 * 122.21518 * 0.02562 * 18 17 16 20 20 C 1.39286 * 121.14103 * 0.02562 * 19 18 17 21 21 S 1.75885 * 131.39474 * 179.97438 * 20 19 18 22 22 C 1.75547 * 91.52545 * 180.02562 * 21 20 19 23 23 C 1.32480 * 110.79442 * 359.97438 * 22 21 20 24 24 C 1.40013 * 115.78181 * 359.72932 * 23 22 21 25 25 C 1.55156 * 102.94007 * 337.80442 * 11 10 9 26 26 H 1.09008 * 110.99883 * 153.58033 * 25 11 10 27 27 O 1.42898 * 111.00584 * 277.42630 * 25 11 10 28 28 C 1.47423 * 125.64597 * 349.98052 * 9 7 2 29 29 H 0.97007 * 120.00015 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.88743 * 59.56216 * 10 9 7 31 31 H 1.08998 * 110.01539 * 298.45912 * 10 9 7 32 32 H 0.96994 * 120.00118 * 93.54352 * 13 11 10 33 33 H 1.08005 * 119.43805 * 0.02562 * 17 16 14 34 34 H 1.08000 * 119.42690 * 179.97438 * 19 18 17 35 35 H 1.08000 * 124.60304 * 179.97438 * 22 21 20 36 36 H 1.08001 * 122.10751 * 180.02562 * 23 22 21 37 37 H 0.96701 * 113.99974 * 180.02562 * 27 25 11 38 38 H 1.09002 * 110.36526 * 322.93412 * 28 9 7 39 39 H 1.09000 * 110.36862 * 85.25423 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4102 2.0970 -1.3963 5 1 1.4943 2.6258 0.7859 6 1 3.5888 1.4164 0.6107 7 6 2.0102 -1.2021 -0.0005 8 1 3.0790 -1.2086 -0.1562 9 7 1.3398 -2.3799 0.1962 10 6 1.9019 -3.7263 0.0155 11 6 0.7930 -4.7378 0.3749 12 1 0.2745 -5.0764 -0.5220 13 7 1.3485 -5.8761 1.1111 14 6 1.8548 -6.9299 0.4405 15 8 1.8500 -6.9361 -0.7756 16 6 2.4130 -8.0752 1.1810 17 6 2.4238 -8.0805 2.5686 18 7 2.9202 -9.0997 3.2427 19 6 3.4278 -10.1569 2.6440 20 6 3.4653 -10.2492 1.2547 21 16 4.0701 -11.5108 0.1888 22 6 3.6180 -10.5894 -1.2354 23 6 3.0620 -9.4368 -0.8929 24 6 2.9473 -9.2008 0.4824 25 6 -0.1542 -3.9075 1.2809 26 1 -1.1724 -4.2945 1.2400 27 8 0.3246 -3.8728 2.6269 28 6 -0.0653 -2.5077 0.6236 29 1 -0.4850 0.8401 0.0004 30 1 2.7570 -3.8631 0.6775 31 1 2.2094 -3.8662 -1.0208 32 1 1.3521 -5.8713 2.0810 33 1 2.0181 -7.2359 3.1058 34 1 3.8227 -10.9660 3.2405 35 1 3.7723 -10.9176 -2.2527 36 1 2.7145 -8.7261 -1.6282 37 1 -0.2351 -3.3655 3.2305 38 1 -0.3134 -1.7320 1.3481 39 1 -0.7306 -2.4501 -0.2378 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083722730.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:35 Heat of formation + Delta-G solvation = -12.026264 kcal Electronic energy + Delta-G solvation = -25706.147468 eV Core-core repulsion = 21933.403491 eV Total energy + Delta-G solvation = -3772.743977 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 333.093 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.97349 -40.61627 -39.25749 -37.41792 -36.39184 -35.51728 -33.84545 -32.65394 -31.39914 -30.26984 -28.80886 -26.62763 -25.69223 -25.28333 -22.69294 -22.19869 -22.05262 -21.34783 -19.70572 -19.02210 -18.58442 -18.14252 -17.43293 -17.14717 -16.84008 -16.62125 -16.30141 -15.84940 -15.68257 -15.28674 -15.13766 -15.10822 -14.68973 -14.59947 -14.33929 -13.78918 -13.66590 -13.32268 -13.18690 -13.10673 -12.91439 -12.75165 -12.31523 -12.15342 -12.03358 -11.95573 -11.88713 -11.41225 -11.03575 -10.86525 -10.76645 -10.65248 -10.23785 -10.11285 -8.91791 -8.89192 -7.92147 -5.26459 -0.88348 -0.36105 0.36702 0.76671 1.22656 1.45306 1.45879 1.55998 1.66918 1.94110 2.47656 2.66768 3.10519 3.24237 3.28394 3.41704 3.55248 3.65857 3.70195 3.80116 3.91250 3.95357 4.15823 4.28294 4.30199 4.43702 4.51077 4.69828 4.78337 4.84914 4.91541 5.05683 5.19121 5.30812 5.35316 5.36889 5.44655 5.60886 6.14885 6.44072 6.66299 6.88287 7.05215 7.09739 7.69596 8.34978 9.19226 Molecular weight = 333.09amu Principal moments of inertia in cm(-1) A = 0.022882 B = 0.002641 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.373480 B =10600.099409 C =11035.945261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.056 4.056 3 Si 0.978 3.022 4 H -0.287 1.287 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.247 4.247 8 H 0.070 0.930 9 N -0.614 5.614 10 C 0.132 3.868 11 C 0.156 3.844 12 H 0.100 0.900 13 N -0.690 5.690 14 C 0.560 3.440 15 O -0.567 6.567 16 C -0.171 4.171 17 C 0.134 3.866 18 N -0.491 5.491 19 C 0.190 3.810 20 C -0.237 4.237 21 S 0.184 5.816 22 C -0.156 4.156 23 C -0.160 4.160 24 C -0.001 4.001 25 C 0.092 3.908 26 H 0.100 0.900 27 O -0.562 6.562 28 C 0.151 3.849 29 H 0.251 0.749 30 H 0.022 0.978 31 H 0.009 0.991 32 H 0.417 0.583 33 H 0.180 0.820 34 H 0.202 0.798 35 H 0.204 0.796 36 H 0.146 0.854 37 H 0.398 0.602 38 H 0.054 0.946 39 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.913 -25.229 5.658 26.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.250 4.250 3 Si 0.805 3.195 4 H -0.214 1.214 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.376 4.376 8 H 0.088 0.912 9 N -0.341 5.341 10 C 0.005 3.995 11 C 0.050 3.950 12 H 0.118 0.882 13 N -0.342 5.342 14 C 0.348 3.652 15 O -0.448 6.448 16 C -0.178 4.178 17 C -0.018 4.018 18 N -0.200 5.200 19 C 0.023 3.977 20 C -0.355 4.355 21 S 0.447 5.553 22 C -0.292 4.292 23 C -0.189 4.189 24 C -0.018 4.018 25 C 0.031 3.969 26 H 0.118 0.882 27 O -0.371 6.371 28 C 0.025 3.975 29 H 0.060 0.940 30 H 0.040 0.960 31 H 0.027 0.973 32 H 0.256 0.744 33 H 0.197 0.803 34 H 0.219 0.781 35 H 0.221 0.779 36 H 0.163 0.837 37 H 0.249 0.751 38 H 0.072 0.928 39 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges 4.977 -26.696 5.643 27.736 hybrid contribution -0.802 3.220 -1.047 3.480 sum 4.175 -23.475 4.596 24.283 Atomic orbital electron populations 1.70091 1.06077 1.25721 1.57333 1.25577 0.96605 1.00763 1.02040 0.85094 0.77798 0.79195 0.77371 1.21428 1.21281 1.19809 1.19318 0.91436 0.84144 1.42706 0.91189 1.44530 1.10114 1.00223 1.79223 1.21625 0.95590 0.85494 0.96742 1.21848 0.93588 0.84506 0.95045 0.88195 1.45574 1.60679 1.16727 1.11206 1.18235 0.77497 0.82431 0.87020 1.90719 1.58127 1.81225 1.14684 1.20706 1.06565 0.95288 0.95233 1.23013 0.92817 0.96768 0.89245 1.67851 1.11285 1.01265 1.39584 1.23033 0.90367 0.95512 0.88803 1.24153 1.09750 1.01357 1.00231 1.83918 1.61510 1.16995 0.92910 1.26037 1.01250 0.96939 1.04930 1.20228 1.04085 0.99666 0.94929 1.18493 0.96147 0.93096 0.94058 1.23283 0.96280 0.94689 0.82611 0.88231 1.86207 1.56102 1.76502 1.18282 1.21986 0.85115 0.93874 0.96494 0.93967 0.95963 0.97330 0.74362 0.80316 0.78104 0.77878 0.83653 0.75123 0.92779 0.97029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.35 10.68 21.65 0.23 -55.12 16 2 C -0.06 -3.19 5.40 84.86 0.46 -2.73 16 3 Si 0.98 45.88 29.56 68.60 2.03 47.91 16 4 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 5 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 6 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 7 C -0.25 -14.26 10.24 84.03 0.86 -13.40 16 8 H 0.07 3.99 7.85 -2.91 -0.02 3.97 16 9 N -0.61 -32.30 3.39 -691.99 -2.35 -34.65 16 10 C 0.13 6.03 6.99 86.73 0.61 6.63 16 11 C 0.16 5.65 3.12 46.18 0.14 5.80 16 12 H 0.10 3.72 7.69 -2.39 -0.02 3.70 16 13 N -0.69 -20.86 5.04 -440.20 -2.22 -23.08 16 14 C 0.56 17.92 7.76 86.65 0.67 18.59 16 15 O -0.57 -21.67 14.19 -4.08 -0.06 -21.73 16 16 C -0.17 -4.57 5.94 -19.60 -0.12 -4.69 16 17 C 0.13 3.02 10.67 84.81 0.90 3.92 16 18 N -0.49 -10.32 10.32 -194.65 -2.01 -12.33 16 19 C 0.19 3.22 11.20 84.97 0.95 4.18 16 20 C -0.24 -4.55 6.52 22.98 0.15 -4.40 16 21 S 0.18 2.41 23.29 -56.49 -1.32 1.10 16 22 C -0.16 -2.48 11.10 66.69 0.74 -1.74 16 23 C -0.16 -3.81 9.43 21.57 0.20 -3.61 16 24 C 0.00 -0.02 5.88 -21.24 -0.12 -0.15 16 25 C 0.09 3.10 4.28 31.98 0.14 3.23 16 26 H 0.10 2.71 8.14 -2.38 -0.02 2.69 16 27 O -0.56 -16.79 12.23 -148.98 -1.82 -18.61 16 28 C 0.15 7.03 5.16 86.85 0.45 7.48 16 29 H 0.25 14.22 8.31 -92.70 -0.77 13.45 16 30 H 0.02 1.04 8.03 -2.39 -0.02 1.02 16 31 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.42 10.74 5.60 -92.71 -0.52 10.22 16 33 H 0.18 3.30 6.37 -2.91 -0.02 3.28 16 34 H 0.20 1.76 8.06 -2.91 -0.02 1.73 16 35 H 0.20 1.88 8.06 -2.91 -0.02 1.86 16 36 H 0.15 4.12 6.28 -2.91 -0.02 4.10 16 37 H 0.40 8.94 9.12 -74.06 -0.68 8.27 16 38 H 0.05 2.76 6.94 -2.39 -0.02 2.74 16 39 H 0.01 0.60 8.07 -2.39 -0.02 0.58 16 Total: -1.00 -74.66 340.39 -1.54 -76.20 By element: Atomic # 1 Polarization: 21.25 SS G_CDS: -0.06 Total: 21.18 kcal Atomic # 6 Polarization: 13.10 SS G_CDS: 6.04 Total: 19.13 kcal Atomic # 7 Polarization: -118.84 SS G_CDS: -6.34 Total: -125.19 kcal Atomic # 8 Polarization: -38.46 SS G_CDS: -1.88 Total: -40.34 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Atomic # 16 Polarization: 2.41 SS G_CDS: -1.32 Total: 1.10 kcal Total: -74.66 -1.54 -76.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083722730.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.174 kcal (2) G-P(sol) polarization free energy of solvation -74.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds