Wall clock time and date at job start Tue Mar 31 2020 17:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30749 * 1 3 3 Si 1.86800 * 119.99755 * 2 1 4 4 H 1.48499 * 109.47178 * 89.99931 * 3 2 1 5 5 H 1.48501 * 109.46949 * 209.99536 * 3 2 1 6 6 H 1.48493 * 109.47384 * 329.99634 * 3 2 1 7 7 C 1.40033 * 120.00013 * 179.72212 * 2 1 3 8 8 H 1.07995 * 119.99933 * 157.34184 * 7 2 1 9 9 C 1.41352 * 119.99997 * 337.34363 * 7 2 1 10 10 C 1.40621 * 119.79048 * 162.43599 * 9 7 2 11 11 C 1.38277 * 119.11181 * 179.77032 * 10 9 7 12 12 C 1.38732 * 118.66320 * 0.49293 * 11 10 9 13 13 C 1.39543 * 119.50137 * 359.74533 * 12 11 10 14 14 N 1.39638 * 119.56718 * 179.97438 * 13 12 11 15 15 C 1.33839 * 124.18797 * 184.72580 * 14 13 12 16 16 O 1.21527 * 123.78464 * 0.04304 * 15 14 13 17 17 N 1.34616 * 112.42860 * 179.86875 * 15 14 13 18 18 C 1.47041 * 106.50277 * 0.37436 * 17 15 14 19 19 C 1.52238 * 110.25719 * 117.91711 * 18 17 15 20 20 C 1.53146 * 109.99914 * 53.01999 * 19 18 17 21 21 S 1.81737 * 108.83834 * 62.48792 * 20 19 18 22 22 C 1.81735 * 102.28276 * 306.48200 * 21 20 19 23 23 C 1.52250 * 110.24981 * 241.66211 * 18 17 15 24 24 C 1.34854 * 124.19195 * 5.02360 * 14 13 12 25 25 O 1.21234 * 127.20807 * 359.96723 * 24 14 13 26 26 N 1.31883 * 120.86302 * 0.02562 * 13 12 11 27 27 H 0.96996 * 119.99313 * 174.17782 * 1 2 3 28 28 H 1.07994 * 120.44145 * 359.97438 * 10 9 7 29 29 H 1.08004 * 120.66900 * 180.24500 * 11 10 9 30 30 H 1.08004 * 120.25256 * 179.72466 * 12 11 10 31 31 H 0.97005 * 126.75093 * 180.15097 * 17 15 14 32 32 H 1.09003 * 109.38373 * 173.18023 * 19 18 17 33 33 H 1.09002 * 109.38421 * 292.85472 * 19 18 17 34 34 H 1.08994 * 109.57815 * 302.67953 * 20 19 18 35 35 H 1.09002 * 109.68412 * 182.35641 * 20 19 18 36 36 H 1.08995 * 109.57268 * 293.72109 * 22 21 20 37 37 H 1.08997 * 109.57316 * 173.33120 * 22 21 20 38 38 H 1.08998 * 109.38421 * 67.14081 * 23 18 17 39 39 H 1.09001 * 109.37999 * 186.92103 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.4889 2.0465 1.4001 5 1 3.5390 1.4402 -0.7000 6 1 1.4389 2.6526 -0.7001 7 6 2.0077 -1.2127 0.0059 8 1 3.0251 -1.2505 -0.3542 9 6 1.3827 -2.3873 0.4831 10 6 1.9197 -3.6457 0.1583 11 6 1.2998 -4.7854 0.6367 12 6 0.1596 -4.6461 1.4146 13 6 -0.3273 -3.3694 1.6978 14 7 -1.4752 -3.2277 2.4802 15 6 -2.0731 -2.0573 2.7331 16 8 -1.6782 -0.9904 2.3057 17 7 -3.1632 -2.1949 3.5109 18 6 -3.2860 -3.6298 3.8078 19 6 -3.1632 -3.8705 5.3060 20 6 -4.1558 -2.9827 6.0622 21 16 -5.8447 -3.4412 5.5722 22 6 -5.7679 -3.3205 3.7605 23 6 -4.5982 -4.1713 3.2573 24 6 -2.1154 -4.2523 3.0792 25 8 -1.8156 -5.4264 3.0417 26 7 0.2819 -2.2951 1.2353 27 1 -0.4849 -0.8357 -0.0852 28 1 2.8063 -3.7209 -0.4537 29 1 1.6930 -5.7645 0.4060 30 1 -0.3477 -5.5192 1.7978 31 1 -3.7502 -1.4863 3.8182 32 1 -3.3762 -4.9173 5.5228 33 1 -2.1489 -3.6351 5.6283 34 1 -3.9743 -1.9373 5.8128 35 1 -4.0348 -3.1283 7.1356 36 1 -5.6150 -2.2812 3.4699 37 1 -6.6991 -3.6889 3.3301 38 1 -4.5725 -4.1431 2.1680 39 1 -4.7323 -5.2007 3.5894 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119620249.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:13 Heat of formation + Delta-G solvation = 4.524717 kcal Electronic energy + Delta-G solvation = -27118.671075 eV Core-core repulsion = 23346.644802 eV Total energy + Delta-G solvation = -3772.026273 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 333.093 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.66011 -38.68716 -38.39214 -37.14289 -35.24282 -33.72689 -32.59021 -32.09654 -30.59555 -29.49158 -27.83321 -25.58325 -23.68934 -23.56191 -23.19886 -21.49320 -20.46463 -20.15759 -18.34920 -17.58736 -17.19239 -16.67438 -16.27887 -15.75499 -15.50534 -15.03480 -14.92079 -14.55178 -14.27865 -14.15368 -14.02368 -13.87669 -13.54986 -13.27681 -13.13785 -12.90868 -12.59250 -12.14121 -12.01319 -11.95566 -11.65933 -11.27736 -11.12192 -11.04411 -10.38384 -10.31198 -10.18182 -10.12592 -9.81396 -9.63400 -9.37027 -9.02667 -8.42928 -8.05135 -8.03374 -7.56277 -6.95492 -4.59974 1.36459 1.69255 2.12549 2.39094 2.46508 2.77824 3.10342 3.21243 3.28741 3.39548 3.62032 3.82310 4.04532 4.09928 4.29509 4.44749 4.70611 4.71041 4.74379 4.87542 5.01384 5.28328 5.31336 5.42110 5.45018 5.56933 5.60355 5.62830 5.69022 5.99217 6.42551 6.53540 6.57035 6.88955 6.99267 7.18055 7.45378 7.52422 7.61177 7.77910 7.85176 8.01758 8.52404 8.64504 8.78974 9.66787 10.23381 Molecular weight = 333.09amu Principal moments of inertia in cm(-1) A = 0.017268 B = 0.004052 C = 0.003469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.121197 B = 6908.518068 C = 8070.689137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.723 5.723 2 C 0.029 3.971 3 Si 1.072 2.928 4 H -0.277 1.277 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.478 4.478 8 H 0.085 0.915 9 C 0.258 3.742 10 C -0.280 4.280 11 C -0.035 4.035 12 C -0.334 4.334 13 C 0.367 3.633 14 N -0.502 5.502 15 C 0.683 3.317 16 O -0.461 6.461 17 N -0.733 5.733 18 C 0.123 3.877 19 C -0.116 4.116 20 C -0.079 4.079 21 S -0.258 6.258 22 C -0.080 4.080 23 C -0.115 4.115 24 C 0.535 3.465 25 O -0.453 6.453 26 N -0.538 5.538 27 H 0.312 0.688 28 H 0.105 0.895 29 H 0.106 0.894 30 H 0.128 0.872 31 H 0.433 0.567 32 H 0.102 0.898 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.115 0.885 36 H 0.089 0.911 37 H 0.115 0.885 38 H 0.087 0.913 39 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.807 -5.029 9.082 14.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.344 5.344 2 C -0.202 4.202 3 Si 0.896 3.104 4 H -0.202 1.202 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.509 4.509 8 H 0.103 0.897 9 C 0.135 3.865 10 C -0.303 4.303 11 C -0.059 4.059 12 C -0.360 4.360 13 C 0.134 3.866 14 N -0.242 5.242 15 C 0.382 3.618 16 O -0.325 6.325 17 N -0.402 5.402 18 C 0.031 3.969 19 C -0.156 4.156 20 C -0.228 4.228 21 S -0.032 6.032 22 C -0.228 4.228 23 C -0.156 4.156 24 C 0.321 3.679 25 O -0.322 6.322 26 N -0.258 5.258 27 H 0.128 0.872 28 H 0.123 0.877 29 H 0.124 0.876 30 H 0.146 0.854 31 H 0.278 0.722 32 H 0.120 0.880 33 H 0.105 0.895 34 H 0.107 0.893 35 H 0.133 0.867 36 H 0.107 0.893 37 H 0.133 0.867 38 H 0.106 0.894 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -11.753 -2.859 9.597 15.440 hybrid contribution 1.247 -1.934 -0.750 2.420 sum -10.506 -4.793 8.846 14.547 Atomic orbital electron populations 1.70116 1.07980 1.35965 1.20293 1.26976 0.95954 1.03846 0.93414 0.83532 0.75104 0.73741 0.77974 1.20229 1.20348 1.20185 1.20616 1.01336 0.93116 1.35786 0.89703 1.18294 0.87065 0.92591 0.88542 1.21730 1.05307 0.93249 1.10044 1.20758 0.93686 0.97241 0.94238 1.21147 1.04560 0.95300 1.14989 1.18069 0.85400 0.91394 0.91744 1.43813 1.25812 1.09013 1.45599 1.16107 0.80813 0.84478 0.80412 1.91235 1.64741 1.25278 1.51222 1.45766 1.30850 1.07515 1.56047 1.21048 0.95890 0.82961 0.96987 1.21850 1.00963 1.02228 0.90536 1.23428 0.92851 1.02465 1.04034 1.86967 1.17585 1.91541 1.07111 1.23434 1.02103 1.03694 0.93554 1.21855 0.90513 1.00914 1.02275 1.20397 0.83366 0.85618 0.78521 1.90695 1.68072 1.14702 1.58732 1.67703 1.12974 1.28306 1.16774 0.87226 0.87719 0.87610 0.85430 0.72210 0.87999 0.89489 0.89324 0.86682 0.89292 0.86670 0.89432 0.88008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -20.56 12.84 55.55 0.71 -19.85 16 2 C 0.03 0.76 5.28 -17.34 -0.09 0.67 16 3 Si 1.07 22.50 29.99 -169.99 -5.10 17.41 16 4 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 5 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 6 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 7 C -0.48 -12.97 9.05 -37.73 -0.34 -13.31 16 8 H 0.08 2.16 7.94 -52.49 -0.42 1.74 16 9 C 0.26 7.10 6.17 -84.99 -0.52 6.58 16 10 C -0.28 -6.90 9.83 -38.67 -0.38 -7.28 16 11 C -0.04 -0.80 10.15 -39.38 -0.40 -1.20 16 12 C -0.33 -7.81 9.37 -38.91 -0.36 -8.18 16 13 C 0.37 9.09 7.41 -154.68 -1.15 7.95 16 14 N -0.50 -10.40 2.82 -66.14 -0.19 -10.59 16 15 C 0.68 13.54 8.58 -87.90 -0.75 12.78 16 16 O -0.46 -11.37 15.94 5.34 0.09 -11.29 16 17 N -0.73 -9.83 4.72 -53.93 -0.25 -10.08 16 18 C 0.12 1.48 0.82 -133.16 -0.11 1.37 16 19 C -0.12 -1.12 4.90 -27.04 -0.13 -1.26 16 20 C -0.08 -0.63 6.27 37.23 0.23 -0.40 16 21 S -0.26 -2.24 22.32 -107.50 -2.40 -4.64 16 22 C -0.08 -0.63 6.27 37.23 0.23 -0.40 16 23 C -0.12 -1.12 4.90 -27.04 -0.13 -1.25 16 24 C 0.54 9.07 6.71 -10.66 -0.07 9.00 16 25 O -0.45 -8.29 15.00 5.60 0.08 -8.20 16 26 N -0.54 -14.88 5.95 -10.19 -0.06 -14.94 16 27 H 0.31 9.31 6.38 -40.82 -0.26 9.05 16 28 H 0.10 2.37 8.06 -52.49 -0.42 1.95 16 29 H 0.11 2.02 8.06 -52.48 -0.42 1.59 16 30 H 0.13 2.83 5.30 -52.48 -0.28 2.55 16 31 H 0.43 4.74 7.02 -40.82 -0.29 4.45 16 32 H 0.10 0.91 8.12 -51.93 -0.42 0.49 16 33 H 0.09 0.91 8.08 -51.93 -0.42 0.49 16 34 H 0.09 0.70 6.84 -51.93 -0.36 0.34 16 35 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.09 0.70 6.84 -51.93 -0.36 0.35 16 37 H 0.12 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.09 0.91 8.08 -51.93 -0.42 0.49 16 39 H 0.10 0.91 8.12 -51.93 -0.42 0.49 16 LS Contribution 331.71 15.07 5.00 5.00 Total: -1.00 -32.87 331.71 -10.22 -43.09 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -4.12 Total: 9.01 kcal Atomic # 6 Polarization: 9.06 SS G_CDS: -3.98 Total: 5.07 kcal Atomic # 7 Polarization: -55.67 SS G_CDS: 0.21 Total: -55.46 kcal Atomic # 8 Polarization: -19.66 SS G_CDS: 0.17 Total: -19.49 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.10 Total: 17.41 kcal Atomic # 16 Polarization: -2.24 SS G_CDS: -2.40 Total: -4.64 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.87 -10.22 -43.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119620249.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.618 kcal (2) G-P(sol) polarization free energy of solvation -32.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds