Wall clock time and date at job start Tue Mar 31 2020 17:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30749 * 1 3 3 Si 1.86800 * 119.99755 * 2 1 4 4 H 1.48499 * 109.47178 * 89.99931 * 3 2 1 5 5 H 1.48501 * 109.46949 * 209.99536 * 3 2 1 6 6 H 1.48493 * 109.47384 * 329.99634 * 3 2 1 7 7 C 1.40033 * 120.00013 * 179.72212 * 2 1 3 8 8 H 1.07995 * 119.99933 * 157.34184 * 7 2 1 9 9 C 1.41352 * 119.99997 * 337.34363 * 7 2 1 10 10 C 1.40621 * 119.79048 * 162.43599 * 9 7 2 11 11 C 1.38277 * 119.11181 * 179.77032 * 10 9 7 12 12 C 1.38732 * 118.66320 * 0.49293 * 11 10 9 13 13 C 1.39543 * 119.50137 * 359.74533 * 12 11 10 14 14 N 1.39638 * 119.56718 * 179.97438 * 13 12 11 15 15 C 1.33839 * 124.18797 * 184.72580 * 14 13 12 16 16 O 1.21527 * 123.78464 * 0.04304 * 15 14 13 17 17 N 1.34616 * 112.42860 * 179.86875 * 15 14 13 18 18 C 1.47041 * 106.50277 * 0.37436 * 17 15 14 19 19 C 1.52238 * 110.25719 * 117.91711 * 18 17 15 20 20 C 1.53146 * 109.99914 * 53.01999 * 19 18 17 21 21 S 1.81737 * 108.83834 * 62.48792 * 20 19 18 22 22 C 1.81735 * 102.28276 * 306.48200 * 21 20 19 23 23 C 1.52250 * 110.24981 * 241.66211 * 18 17 15 24 24 C 1.34854 * 124.19195 * 5.02360 * 14 13 12 25 25 O 1.21234 * 127.20807 * 359.96723 * 24 14 13 26 26 N 1.31883 * 120.86302 * 0.02562 * 13 12 11 27 27 H 0.96996 * 119.99313 * 174.17782 * 1 2 3 28 28 H 1.07994 * 120.44145 * 359.97438 * 10 9 7 29 29 H 1.08004 * 120.66900 * 180.24500 * 11 10 9 30 30 H 1.08004 * 120.25256 * 179.72466 * 12 11 10 31 31 H 0.97005 * 126.75093 * 180.15097 * 17 15 14 32 32 H 1.09003 * 109.38373 * 173.18023 * 19 18 17 33 33 H 1.09002 * 109.38421 * 292.85472 * 19 18 17 34 34 H 1.08994 * 109.57815 * 302.67953 * 20 19 18 35 35 H 1.09002 * 109.68412 * 182.35641 * 20 19 18 36 36 H 1.08995 * 109.57268 * 293.72109 * 22 21 20 37 37 H 1.08997 * 109.57316 * 173.33120 * 22 21 20 38 38 H 1.08998 * 109.38421 * 67.14081 * 23 18 17 39 39 H 1.09001 * 109.37999 * 186.92103 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.4889 2.0465 1.4001 5 1 3.5390 1.4402 -0.7000 6 1 1.4389 2.6526 -0.7001 7 6 2.0077 -1.2127 0.0059 8 1 3.0251 -1.2505 -0.3542 9 6 1.3827 -2.3873 0.4831 10 6 1.9197 -3.6457 0.1583 11 6 1.2998 -4.7854 0.6367 12 6 0.1596 -4.6461 1.4146 13 6 -0.3273 -3.3694 1.6978 14 7 -1.4752 -3.2277 2.4802 15 6 -2.0731 -2.0573 2.7331 16 8 -1.6782 -0.9904 2.3057 17 7 -3.1632 -2.1949 3.5109 18 6 -3.2860 -3.6298 3.8078 19 6 -3.1632 -3.8705 5.3060 20 6 -4.1558 -2.9827 6.0622 21 16 -5.8447 -3.4412 5.5722 22 6 -5.7679 -3.3205 3.7605 23 6 -4.5982 -4.1713 3.2573 24 6 -2.1154 -4.2523 3.0792 25 8 -1.8156 -5.4264 3.0417 26 7 0.2819 -2.2951 1.2353 27 1 -0.4849 -0.8357 -0.0852 28 1 2.8063 -3.7209 -0.4537 29 1 1.6930 -5.7645 0.4060 30 1 -0.3477 -5.5192 1.7978 31 1 -3.7502 -1.4863 3.8182 32 1 -3.3762 -4.9173 5.5228 33 1 -2.1489 -3.6351 5.6283 34 1 -3.9743 -1.9373 5.8128 35 1 -4.0348 -3.1283 7.1356 36 1 -5.6150 -2.2812 3.4699 37 1 -6.6991 -3.6889 3.3301 38 1 -4.5725 -4.1431 2.1680 39 1 -4.7323 -5.2007 3.5894 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119620249.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:12 Heat of formation + Delta-G solvation = -15.594573 kcal Electronic energy + Delta-G solvation = -27119.543513 eV Core-core repulsion = 23346.644802 eV Total energy + Delta-G solvation = -3772.898711 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 333.093 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -44.07071 -40.45186 -39.90388 -38.47983 -36.87267 -35.58290 -33.91477 -32.82897 -32.48412 -31.29695 -28.91326 -27.49107 -24.98463 -24.89444 -24.43629 -23.20095 -21.79266 -21.68279 -20.08662 -19.02468 -18.30873 -18.07611 -17.73887 -17.11480 -16.84493 -16.73573 -16.29421 -15.89884 -15.74361 -15.50876 -15.34255 -14.98495 -14.91672 -14.68368 -14.24440 -14.05774 -13.91027 -13.82384 -13.53214 -13.01503 -12.92739 -12.83309 -12.70980 -12.07351 -11.96802 -11.87242 -11.83314 -11.60069 -11.29035 -10.94594 -10.71777 -10.64451 -10.36458 -9.99574 -9.48707 -8.96742 -8.71343 -6.64629 0.23009 0.63814 0.70262 0.87517 0.93030 1.46339 1.50683 1.62551 1.78628 1.90440 2.00835 2.36250 2.59300 2.77875 3.11355 3.38934 3.58852 3.71001 3.77789 3.91622 3.98845 4.06361 4.14722 4.30145 4.34030 4.58810 4.64599 4.66010 4.67668 4.70018 4.76113 4.83743 4.89429 5.14936 5.37342 5.63433 5.65062 5.71698 5.77843 5.94703 6.05104 6.19127 6.59975 6.79947 7.08583 7.73166 8.14858 Molecular weight = 333.09amu Principal moments of inertia in cm(-1) A = 0.017268 B = 0.004052 C = 0.003469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.121197 B = 6908.518068 C = 8070.689137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.754 5.754 2 C -0.008 4.008 3 Si 1.125 2.875 4 H -0.276 1.276 5 H -0.250 1.250 6 H -0.271 1.271 7 C -0.514 4.514 8 H 0.093 0.907 9 C 0.230 3.770 10 C -0.295 4.295 11 C -0.030 4.030 12 C -0.331 4.331 13 C 0.347 3.653 14 N -0.516 5.516 15 C 0.679 3.321 16 O -0.518 6.518 17 N -0.702 5.702 18 C 0.136 3.864 19 C -0.112 4.112 20 C -0.074 4.074 21 S -0.262 6.262 22 C -0.074 4.074 23 C -0.112 4.112 24 C 0.530 3.470 25 O -0.466 6.466 26 N -0.567 5.567 27 H 0.291 0.709 28 H 0.120 0.880 29 H 0.148 0.852 30 H 0.142 0.858 31 H 0.447 0.553 32 H 0.117 0.883 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.135 0.865 36 H 0.090 0.910 37 H 0.135 0.865 38 H 0.080 0.920 39 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.806 -6.029 10.449 16.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.374 5.374 2 C -0.232 4.232 3 Si 0.942 3.058 4 H -0.202 1.202 5 H -0.174 1.174 6 H -0.196 1.196 7 C -0.545 4.545 8 H 0.111 0.889 9 C 0.106 3.894 10 C -0.318 4.318 11 C -0.054 4.054 12 C -0.357 4.357 13 C 0.114 3.886 14 N -0.256 5.256 15 C 0.379 3.621 16 O -0.387 6.387 17 N -0.372 5.372 18 C 0.046 3.954 19 C -0.152 4.152 20 C -0.222 4.222 21 S -0.036 6.036 22 C -0.223 4.223 23 C -0.152 4.152 24 C 0.318 3.682 25 O -0.335 6.335 26 N -0.286 5.286 27 H 0.105 0.895 28 H 0.138 0.862 29 H 0.166 0.834 30 H 0.160 0.840 31 H 0.295 0.705 32 H 0.135 0.865 33 H 0.098 0.902 34 H 0.108 0.892 35 H 0.153 0.847 36 H 0.109 0.891 37 H 0.153 0.847 38 H 0.099 0.901 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -12.819 -3.923 11.011 17.348 hybrid contribution 1.491 -1.880 -1.100 2.639 sum -11.329 -5.803 9.911 16.132 Atomic orbital electron populations 1.70233 1.08989 1.34564 1.23596 1.28508 0.95877 1.07356 0.91433 0.82924 0.75030 0.69629 0.78207 1.20201 1.17356 1.19617 1.20894 1.01977 0.93960 1.37635 0.88928 1.18799 0.87637 0.94075 0.88885 1.21949 1.06143 0.92991 1.10690 1.21218 0.92831 0.98562 0.92741 1.21502 1.04615 0.95252 1.14285 1.18546 0.86568 0.91483 0.91979 1.44027 1.25266 1.10562 1.45765 1.16312 0.81712 0.83503 0.80588 1.91202 1.66656 1.27090 1.53714 1.45568 1.28741 1.08930 1.53945 1.21242 0.94863 0.81095 0.98211 1.21899 1.01340 1.03675 0.88273 1.23439 0.91893 1.01975 1.04941 1.87083 1.17735 1.91465 1.07281 1.23446 1.02034 1.03448 0.93335 1.21905 0.89398 1.01997 1.01875 1.21249 0.83939 0.85080 0.77914 1.90663 1.68668 1.15080 1.59109 1.67736 1.13539 1.29874 1.17498 0.89471 0.86161 0.83416 0.84004 0.70450 0.86491 0.90207 0.89156 0.84720 0.89149 0.84723 0.90127 0.86483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -44.91 12.84 21.84 0.28 -44.63 16 2 C -0.01 -0.43 5.28 85.29 0.45 0.03 16 3 Si 1.13 46.07 29.99 68.60 2.06 48.13 16 4 H -0.28 -11.21 7.11 99.48 0.71 -10.50 16 5 H -0.25 -8.99 7.11 99.48 0.71 -8.28 16 6 H -0.27 -10.75 7.11 99.48 0.71 -10.05 16 7 C -0.51 -28.83 9.05 23.47 0.21 -28.61 16 8 H 0.09 4.82 7.94 -2.91 -0.02 4.80 16 9 C 0.23 13.08 6.17 40.22 0.25 13.33 16 10 C -0.30 -14.63 9.83 22.86 0.22 -14.40 16 11 C -0.03 -1.31 10.15 22.40 0.23 -1.08 16 12 C -0.33 -15.38 9.37 22.70 0.21 -15.17 16 13 C 0.35 17.64 7.41 133.10 0.99 18.63 16 14 N -0.52 -21.73 2.82 -600.35 -1.69 -23.42 16 15 C 0.68 27.62 8.58 179.40 1.54 29.16 16 16 O -0.52 -26.84 15.94 -3.80 -0.06 -26.90 16 17 N -0.70 -18.33 4.72 -442.93 -2.09 -20.42 16 18 C 0.14 3.06 0.82 2.44 0.00 3.07 16 19 C -0.11 -1.89 4.90 30.39 0.15 -1.74 16 20 C -0.07 -0.96 6.27 72.03 0.45 -0.51 16 21 S -0.26 -3.69 22.32 -56.49 -1.26 -4.96 16 22 C -0.07 -0.97 6.27 72.03 0.45 -0.51 16 23 C -0.11 -1.89 4.90 30.39 0.15 -1.74 16 24 C 0.53 17.60 6.71 87.83 0.59 18.18 16 25 O -0.47 -16.47 15.00 -2.89 -0.04 -16.51 16 26 N -0.57 -32.60 5.95 -186.16 -1.11 -33.71 16 27 H 0.29 18.48 6.38 -92.71 -0.59 17.89 16 28 H 0.12 5.42 8.06 -2.91 -0.02 5.40 16 29 H 0.15 5.20 8.06 -2.91 -0.02 5.17 16 30 H 0.14 6.13 5.30 -2.91 -0.02 6.11 16 31 H 0.45 9.21 7.02 -92.70 -0.65 8.56 16 32 H 0.12 1.71 8.12 -2.39 -0.02 1.69 16 33 H 0.08 1.52 8.08 -2.39 -0.02 1.50 16 34 H 0.09 1.17 6.84 -2.39 -0.02 1.15 16 35 H 0.13 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.09 1.18 6.84 -2.39 -0.02 1.16 16 37 H 0.13 1.31 8.14 -2.39 -0.02 1.30 16 38 H 0.08 1.53 8.08 -2.39 -0.02 1.51 16 39 H 0.12 1.71 8.12 -2.39 -0.02 1.69 16 Total: -1.00 -76.03 331.71 2.62 -73.41 By element: Atomic # 1 Polarization: 29.75 SS G_CDS: 0.64 Total: 30.39 kcal Atomic # 6 Polarization: 12.73 SS G_CDS: 5.89 Total: 18.62 kcal Atomic # 7 Polarization: -117.57 SS G_CDS: -4.61 Total: -122.18 kcal Atomic # 8 Polarization: -43.31 SS G_CDS: -0.10 Total: -43.42 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.06 Total: 48.13 kcal Atomic # 16 Polarization: -3.69 SS G_CDS: -1.26 Total: -4.96 kcal Total: -76.03 2.62 -73.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119620249.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.815 kcal (2) G-P(sol) polarization free energy of solvation -76.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds