Wall clock time and date at job start Tue Mar 31 2020 16:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 120.00041 * 2 1 4 4 H 1.48507 * 109.46881 * 269.99381 * 3 2 1 5 5 H 1.48496 * 109.47331 * 29.99798 * 3 2 1 6 6 H 1.48503 * 109.47049 * 149.99995 * 3 2 1 7 7 C 1.37871 * 119.99458 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99749 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00404 * 0.02562 * 7 2 1 10 10 O 1.42905 * 110.88754 * 59.29708 * 9 7 2 11 11 C 1.55163 * 111.00660 * 183.17791 * 9 7 2 12 12 C 1.54320 * 102.94147 * 153.61367 * 11 9 7 13 13 N 1.47021 * 107.27383 * 337.80980 * 12 11 9 14 14 C 1.34779 * 125.65165 * 178.97713 * 13 12 11 15 15 O 1.21757 * 120.00158 * 179.97438 * 14 13 12 16 16 C 1.46231 * 119.99553 * 359.97438 * 14 13 12 17 17 C 1.37943 * 125.83119 * 179.71483 * 16 14 13 18 18 C 1.39589 * 106.90151 * 179.84552 * 17 16 14 19 19 C 1.38015 * 106.95805 * 0.41060 * 18 17 16 20 20 C 1.46795 * 125.78370 * 179.71993 * 19 18 17 21 21 C 1.36359 * 125.34176 * 179.72118 * 20 19 18 22 22 C 1.37635 * 114.42531 * 179.85750 * 21 20 19 23 23 C 1.33790 * 115.20611 * 0.43392 * 22 21 20 24 24 S 1.75829 * 109.97578 * 359.76335 * 23 22 21 25 25 O 1.34488 * 108.43475 * 359.74672 * 19 18 17 26 26 C 1.47524 * 108.71517 * 358.94187 * 13 12 11 27 27 H 0.97010 * 119.99713 * 0.02562 * 1 2 3 28 28 H 0.96696 * 114.00036 * 300.70269 * 10 9 7 29 29 H 1.09002 * 110.71715 * 271.97869 * 11 9 7 30 30 H 1.08996 * 110.71824 * 35.25310 * 11 9 7 31 31 H 1.09008 * 109.88384 * 97.22443 * 12 11 9 32 32 H 1.09003 * 109.88291 * 218.23509 * 12 11 9 33 33 H 1.08007 * 126.54736 * 359.97438 * 17 16 14 34 34 H 1.07999 * 126.52113 * 180.15385 * 18 17 16 35 35 H 1.08004 * 122.78569 * 0.03588 * 21 20 19 36 36 H 1.08002 * 122.39897 * 180.19435 * 22 21 20 37 37 H 1.08005 * 125.01352 * 179.78448 * 23 22 21 38 38 H 1.09004 * 110.36953 * 265.31028 * 26 13 12 39 39 H 1.09001 * 110.41107 * 142.95306 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4002 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 8 0.4062 -2.5998 -1.1478 11 6 2.2253 -3.7040 0.0815 12 6 1.3634 -4.8018 0.7399 13 7 0.2753 -4.1275 1.4630 14 6 -0.7057 -4.7400 2.1551 15 8 -1.5585 -4.0779 2.7179 16 6 -0.7458 -6.1999 2.2300 17 6 -1.6870 -6.9482 2.9060 18 6 -1.3531 -8.2899 2.7137 19 6 -0.2141 -8.3136 1.9346 20 6 0.4957 -9.5186 1.4883 21 6 1.6179 -9.5316 0.7138 22 6 2.0995 -10.7895 0.4309 23 6 1.3919 -11.8003 0.9483 24 16 0.0276 -11.1723 1.8625 25 8 0.1357 -7.0457 1.6540 26 6 0.4352 -2.6694 1.3064 27 1 -0.4850 0.8402 -0.0004 28 1 -0.2523 -1.8949 -1.2146 29 1 2.5440 -4.0097 -0.9150 30 1 3.0856 -3.4629 0.7058 31 1 0.9490 -5.4571 -0.0263 32 1 1.9700 -5.3820 1.4353 33 1 -2.5237 -6.5686 3.4737 34 1 -1.8827 -9.1464 3.1041 35 1 2.0912 -8.6297 0.3548 36 1 2.9830 -10.9494 -0.1693 37 1 1.6246 -12.8475 0.8231 38 1 0.9830 -2.2547 2.1526 39 1 -0.5382 -2.1882 1.2111 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363463708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:54:20 Heat of formation + Delta-G solvation = -29.731920 kcal Electronic energy + Delta-G solvation = -25772.044372 eV Core-core repulsion = 21966.239869 eV Total energy + Delta-G solvation = -3805.804503 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 333.087 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.52678 -39.25945 -37.89410 -37.22382 -34.38324 -33.16634 -32.21966 -31.66046 -30.26894 -28.46127 -27.63723 -25.58586 -24.50139 -23.04520 -21.89765 -21.60796 -19.78643 -19.52027 -19.38561 -18.04891 -17.31771 -16.96594 -16.39577 -16.04121 -15.39782 -15.01986 -14.85729 -14.57311 -14.33513 -13.44418 -13.40460 -13.29556 -13.14762 -13.14195 -12.94354 -12.83508 -12.77431 -12.27845 -12.06756 -11.64377 -11.50740 -11.21640 -11.06933 -10.84302 -10.63765 -10.49825 -10.24411 -10.20628 -9.82447 -9.70954 -9.42365 -8.85046 -8.72313 -8.43760 -8.07283 -7.77869 -6.31332 -4.41077 0.10062 1.02778 1.36434 1.57862 2.15836 2.72526 2.73997 3.19245 3.27173 3.29412 3.50436 3.54604 4.23932 4.29695 4.72266 4.78096 4.80592 4.96456 5.12230 5.25489 5.39318 5.50243 5.59642 5.66627 5.69596 5.72747 5.79806 5.97850 6.03948 6.06280 6.19309 6.30521 6.46530 6.67294 6.73581 6.79562 6.94806 7.19743 7.29660 7.71145 7.96548 8.03697 8.49211 8.62900 9.27966 9.38328 10.76022 Molecular weight = 333.09amu Principal moments of inertia in cm(-1) A = 0.022597 B = 0.002817 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.794257 B = 9935.803149 C =10880.762874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.071 3.929 3 Si 0.905 3.095 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.538 4.538 8 H 0.068 0.932 9 C 0.249 3.751 10 O -0.583 6.583 11 C -0.117 4.117 12 C 0.106 3.894 13 N -0.595 5.595 14 C 0.601 3.399 15 O -0.530 6.530 16 C -0.047 4.047 17 C -0.126 4.126 18 C -0.197 4.197 19 C 0.068 3.932 20 C -0.130 4.130 21 C -0.113 4.113 22 C -0.130 4.130 23 C -0.218 4.218 24 S 0.160 5.840 25 O -0.140 6.140 26 C 0.093 3.907 27 H 0.271 0.729 28 H 0.384 0.616 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.164 0.836 34 H 0.156 0.844 35 H 0.149 0.851 36 H 0.146 0.854 37 H 0.169 0.831 38 H 0.066 0.934 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.737 -21.739 3.053 22.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.133 4.133 3 Si 0.732 3.268 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.576 4.576 8 H 0.086 0.914 9 C 0.209 3.791 10 O -0.392 6.392 11 C -0.155 4.155 12 C -0.017 4.017 13 N -0.326 5.326 14 C 0.388 3.612 15 O -0.410 6.410 16 C -0.101 4.101 17 C -0.147 4.147 18 C -0.217 4.217 19 C 0.013 3.987 20 C -0.247 4.247 21 C -0.144 4.144 22 C -0.160 4.160 23 C -0.354 4.354 24 S 0.425 5.575 25 O -0.035 6.035 26 C -0.028 4.028 27 H 0.081 0.919 28 H 0.235 0.765 29 H 0.095 0.905 30 H 0.097 0.903 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.182 0.818 34 H 0.174 0.826 35 H 0.167 0.833 36 H 0.164 0.836 37 H 0.187 0.813 38 H 0.084 0.916 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.554 -22.407 3.911 22.753 hybrid contribution 1.139 1.889 -0.608 2.288 sum 1.692 -20.518 3.303 20.851 Atomic orbital electron populations 1.69653 1.06017 1.28036 1.49532 1.25090 0.95058 0.99830 0.93277 0.86379 0.79754 0.82319 0.78319 1.20367 1.20981 1.19679 1.21466 0.93705 0.89959 1.52494 0.91403 1.19614 0.86156 0.91773 0.81588 1.86094 1.51487 1.55009 1.46604 1.22643 0.97691 0.94854 1.00315 1.22068 0.88580 0.95903 0.95177 1.48712 1.25301 1.10333 1.48225 1.16098 0.81990 0.82861 0.80240 1.90879 1.38979 1.63362 1.47734 1.22779 0.93437 0.90909 1.02970 1.21977 1.00138 0.91726 1.00820 1.21926 0.97895 0.98017 1.03867 1.19753 0.96010 0.81862 1.01042 1.21975 1.01176 0.93952 1.07595 1.20789 0.95425 0.99457 0.98768 1.20043 1.02023 0.91288 1.02629 1.25888 1.00213 1.03595 1.05691 1.84096 1.27633 0.94750 1.50990 1.84257 1.45922 1.14541 1.58820 1.23438 1.03085 0.75652 1.00615 0.91874 0.76507 0.90524 0.90287 0.91812 0.92343 0.81799 0.82634 0.83341 0.83618 0.81322 0.91587 0.89326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.57 10.69 55.43 0.59 -22.98 16 2 C 0.07 1.82 5.29 -17.82 -0.09 1.73 16 3 Si 0.91 20.12 29.54 -169.99 -5.02 15.10 16 4 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 7 C -0.54 -13.79 8.26 -34.44 -0.28 -14.07 16 8 H 0.07 1.70 7.78 -52.49 -0.41 1.29 16 9 C 0.25 5.99 0.88 -89.62 -0.08 5.91 16 10 O -0.58 -14.84 13.17 -35.23 -0.46 -15.31 16 11 C -0.12 -2.32 6.13 -24.90 -0.15 -2.48 16 12 C 0.11 1.95 5.54 -3.07 -0.02 1.94 16 13 N -0.60 -12.66 3.33 -172.13 -0.57 -13.23 16 14 C 0.60 12.62 7.81 -13.05 -0.10 12.52 16 15 O -0.53 -12.50 17.12 5.14 0.09 -12.41 16 16 C -0.05 -0.82 6.97 -36.48 -0.25 -1.08 16 17 C -0.13 -1.86 10.63 -39.19 -0.42 -2.28 16 18 C -0.20 -2.48 10.63 -39.16 -0.42 -2.90 16 19 C 0.07 0.92 7.15 -36.21 -0.26 0.66 16 20 C -0.13 -1.48 6.44 -36.80 -0.24 -1.72 16 21 C -0.11 -1.18 10.15 -40.48 -0.41 -1.59 16 22 C -0.13 -1.06 10.15 -41.36 -0.42 -1.48 16 23 C -0.22 -1.58 11.22 29.17 0.33 -1.26 16 24 S 0.16 1.35 23.06 -107.50 -2.48 -1.13 16 25 O -0.14 -2.24 8.24 3.07 0.03 -2.21 16 26 C 0.09 2.22 5.51 -2.47 -0.01 2.21 16 27 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 28 H 0.38 10.06 7.25 45.56 0.33 10.39 16 29 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 30 H 0.08 1.46 8.03 -51.93 -0.42 1.05 16 31 H 0.06 1.15 7.67 -51.92 -0.40 0.76 16 32 H 0.06 0.95 7.78 -51.93 -0.40 0.55 16 33 H 0.16 2.19 8.06 -52.48 -0.42 1.77 16 34 H 0.16 1.49 8.06 -52.49 -0.42 1.06 16 35 H 0.15 1.51 8.06 -52.48 -0.42 1.09 16 36 H 0.15 0.87 8.06 -52.49 -0.42 0.45 16 37 H 0.17 0.76 8.06 -52.48 -0.42 0.34 16 38 H 0.07 1.60 8.03 -51.93 -0.42 1.19 16 39 H 0.09 2.36 7.48 -51.93 -0.39 1.97 16 LS Contribution 349.95 15.07 5.27 5.27 Total: -1.00 -29.44 349.95 -9.16 -38.60 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: -3.77 Total: 12.19 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: -2.83 Total: -3.90 kcal Atomic # 7 Polarization: -36.23 SS G_CDS: 0.02 Total: -36.21 kcal Atomic # 8 Polarization: -29.58 SS G_CDS: -0.35 Total: -29.93 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Atomic # 16 Polarization: 1.35 SS G_CDS: -2.48 Total: -1.13 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -29.44 -9.16 -38.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363463708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.868 kcal (2) G-P(sol) polarization free energy of solvation -29.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds