Wall clock time and date at job start Tue Mar 31 2020 16:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 120.00041 * 2 1 4 4 H 1.48507 * 109.46881 * 269.99381 * 3 2 1 5 5 H 1.48496 * 109.47331 * 29.99798 * 3 2 1 6 6 H 1.48503 * 109.47049 * 149.99995 * 3 2 1 7 7 C 1.37871 * 119.99458 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99749 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00404 * 0.02562 * 7 2 1 10 10 O 1.42905 * 110.88754 * 59.29708 * 9 7 2 11 11 C 1.55163 * 111.00660 * 183.17791 * 9 7 2 12 12 C 1.54320 * 102.94147 * 153.61367 * 11 9 7 13 13 N 1.47021 * 107.27383 * 337.80980 * 12 11 9 14 14 C 1.34779 * 125.65165 * 178.97713 * 13 12 11 15 15 O 1.21757 * 120.00158 * 179.97438 * 14 13 12 16 16 C 1.46231 * 119.99553 * 359.97438 * 14 13 12 17 17 C 1.37943 * 125.83119 * 179.71483 * 16 14 13 18 18 C 1.39589 * 106.90151 * 179.84552 * 17 16 14 19 19 C 1.38015 * 106.95805 * 0.41060 * 18 17 16 20 20 C 1.46795 * 125.78370 * 179.71993 * 19 18 17 21 21 C 1.36359 * 125.34176 * 179.72118 * 20 19 18 22 22 C 1.37635 * 114.42531 * 179.85750 * 21 20 19 23 23 C 1.33790 * 115.20611 * 0.43392 * 22 21 20 24 24 S 1.75829 * 109.97578 * 359.76335 * 23 22 21 25 25 O 1.34488 * 108.43475 * 359.74672 * 19 18 17 26 26 C 1.47524 * 108.71517 * 358.94187 * 13 12 11 27 27 H 0.97010 * 119.99713 * 0.02562 * 1 2 3 28 28 H 0.96696 * 114.00036 * 300.70269 * 10 9 7 29 29 H 1.09002 * 110.71715 * 271.97869 * 11 9 7 30 30 H 1.08996 * 110.71824 * 35.25310 * 11 9 7 31 31 H 1.09008 * 109.88384 * 97.22443 * 12 11 9 32 32 H 1.09003 * 109.88291 * 218.23509 * 12 11 9 33 33 H 1.08007 * 126.54736 * 359.97438 * 17 16 14 34 34 H 1.07999 * 126.52113 * 180.15385 * 18 17 16 35 35 H 1.08004 * 122.78569 * 0.03588 * 21 20 19 36 36 H 1.08002 * 122.39897 * 180.19435 * 22 21 20 37 37 H 1.08005 * 125.01352 * 179.78448 * 23 22 21 38 38 H 1.09004 * 110.36953 * 265.31028 * 26 13 12 39 39 H 1.09001 * 110.41107 * 142.95306 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4002 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 8 0.4062 -2.5998 -1.1478 11 6 2.2253 -3.7040 0.0815 12 6 1.3634 -4.8018 0.7399 13 7 0.2753 -4.1275 1.4630 14 6 -0.7057 -4.7400 2.1551 15 8 -1.5585 -4.0779 2.7179 16 6 -0.7458 -6.1999 2.2300 17 6 -1.6870 -6.9482 2.9060 18 6 -1.3531 -8.2899 2.7137 19 6 -0.2141 -8.3136 1.9346 20 6 0.4957 -9.5186 1.4883 21 6 1.6179 -9.5316 0.7138 22 6 2.0995 -10.7895 0.4309 23 6 1.3919 -11.8003 0.9483 24 16 0.0276 -11.1723 1.8625 25 8 0.1357 -7.0457 1.6540 26 6 0.4352 -2.6694 1.3064 27 1 -0.4850 0.8402 -0.0004 28 1 -0.2523 -1.8949 -1.2146 29 1 2.5440 -4.0097 -0.9150 30 1 3.0856 -3.4629 0.7058 31 1 0.9490 -5.4571 -0.0263 32 1 1.9700 -5.3820 1.4353 33 1 -2.5237 -6.5686 3.4737 34 1 -1.8827 -9.1464 3.1041 35 1 2.0912 -8.6297 0.3548 36 1 2.9830 -10.9494 -0.1693 37 1 1.6246 -12.8475 0.8231 38 1 0.9830 -2.2547 2.1526 39 1 -0.5382 -2.1882 1.2111 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363463708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:54:19 Heat of formation + Delta-G solvation = -48.456743 kcal Electronic energy + Delta-G solvation = -25772.856341 eV Core-core repulsion = 21966.239869 eV Total energy + Delta-G solvation = -3806.616472 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 333.087 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.67316 -40.92797 -39.00845 -38.56890 -36.19897 -34.29532 -34.21680 -32.72494 -31.87176 -29.90938 -29.03858 -27.19545 -25.64643 -24.43389 -23.04966 -22.76477 -21.54317 -20.96469 -20.18656 -19.20545 -18.95794 -18.46500 -17.66292 -17.22689 -16.87391 -16.65296 -16.45190 -16.23442 -15.32822 -15.02835 -14.85398 -14.74406 -14.37504 -14.19982 -14.05726 -14.03621 -13.75871 -13.53853 -13.51124 -13.33939 -13.01182 -12.85679 -12.58638 -12.36412 -12.25357 -12.15894 -11.85571 -11.49829 -11.26227 -11.24437 -10.68586 -10.66885 -10.37581 -9.67312 -9.48745 -8.90148 -8.26925 -6.44226 -0.79012 0.25852 0.29134 0.94112 1.24557 1.42256 1.44504 1.54324 1.55860 1.90385 2.00448 2.04740 2.38272 2.98921 3.25439 3.56321 3.71707 3.75903 4.04067 4.13394 4.18036 4.25888 4.39944 4.42670 4.49233 4.58259 4.64748 4.67125 4.76275 4.94940 5.01089 5.02017 5.16211 5.21049 5.30907 5.33675 5.40297 5.41839 5.71638 5.73159 6.01899 6.41191 6.64057 6.87094 7.26323 7.33814 8.78968 Molecular weight = 333.09amu Principal moments of inertia in cm(-1) A = 0.022597 B = 0.002817 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.794257 B = 9935.803149 C =10880.762874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.025 3.975 3 Si 0.967 3.033 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.555 4.555 8 H 0.072 0.928 9 C 0.234 3.766 10 O -0.589 6.589 11 C -0.110 4.110 12 C 0.114 3.886 13 N -0.604 5.604 14 C 0.598 3.402 15 O -0.571 6.571 16 C -0.095 4.095 17 C -0.106 4.106 18 C -0.200 4.200 19 C 0.084 3.916 20 C -0.179 4.179 21 C -0.108 4.108 22 C -0.147 4.147 23 C -0.196 4.196 24 S 0.191 5.809 25 O -0.151 6.151 26 C 0.106 3.894 27 H 0.271 0.729 28 H 0.376 0.624 29 H 0.088 0.912 30 H 0.093 0.907 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.173 0.827 34 H 0.189 0.811 35 H 0.143 0.857 36 H 0.169 0.831 37 H 0.203 0.797 38 H 0.053 0.947 39 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.241 -25.143 2.992 25.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.175 4.175 3 Si 0.792 3.208 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.189 1.189 7 C -0.593 4.593 8 H 0.090 0.910 9 C 0.193 3.807 10 O -0.397 6.397 11 C -0.148 4.148 12 C -0.008 4.008 13 N -0.334 5.334 14 C 0.388 3.612 15 O -0.455 6.455 16 C -0.147 4.147 17 C -0.126 4.126 18 C -0.220 4.220 19 C 0.030 3.970 20 C -0.296 4.296 21 C -0.141 4.141 22 C -0.176 4.176 23 C -0.332 4.332 24 S 0.456 5.544 25 O -0.047 6.047 26 C -0.016 4.016 27 H 0.080 0.920 28 H 0.226 0.774 29 H 0.106 0.894 30 H 0.112 0.888 31 H 0.086 0.914 32 H 0.102 0.898 33 H 0.191 0.809 34 H 0.206 0.794 35 H 0.161 0.839 36 H 0.186 0.814 37 H 0.220 0.780 38 H 0.072 0.928 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.074 -25.840 3.848 26.207 hybrid contribution 0.715 2.663 -0.623 2.826 sum 2.789 -23.177 3.225 23.566 Atomic orbital electron populations 1.69775 1.07238 1.28568 1.50044 1.25856 0.95775 1.02949 0.92958 0.85410 0.78680 0.78401 0.78279 1.20008 1.21149 1.18865 1.21781 0.94064 0.90939 1.52558 0.90994 1.19855 0.86617 0.93302 0.80877 1.86084 1.51523 1.54671 1.47470 1.22649 0.97324 0.93296 1.01496 1.22111 0.87834 0.95361 0.95521 1.48736 1.26422 1.09286 1.48934 1.16509 0.81024 0.84487 0.79145 1.90827 1.40305 1.64961 1.49369 1.22042 0.96166 0.89394 1.07124 1.22258 0.99025 0.92562 0.98791 1.22224 0.97906 0.97858 1.03984 1.20384 0.95766 0.81601 0.99237 1.22151 1.02635 0.94566 1.10200 1.21036 0.94851 1.00531 0.97652 1.20253 1.03253 0.90409 1.03649 1.26420 0.98568 1.05075 1.03111 1.84006 1.27667 0.92284 1.50419 1.84191 1.45923 1.15378 1.59210 1.23016 1.00788 0.77466 1.00373 0.92001 0.77435 0.89376 0.88826 0.91441 0.89809 0.80920 0.79372 0.83880 0.81367 0.77996 0.92839 0.93051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.16 10.69 21.45 0.23 -49.93 16 2 C 0.03 1.33 5.29 84.65 0.45 1.78 16 3 Si 0.97 41.69 29.54 68.60 2.03 43.71 16 4 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 5 H -0.29 -12.29 7.11 99.48 0.71 -11.59 16 6 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 7 C -0.56 -28.88 8.26 25.60 0.21 -28.66 16 8 H 0.07 3.59 7.78 -2.91 -0.02 3.57 16 9 C 0.23 11.51 0.88 -10.15 -0.01 11.50 16 10 O -0.59 -31.02 13.17 -148.98 -1.96 -32.98 16 11 C -0.11 -4.32 6.13 31.78 0.19 -4.12 16 12 C 0.11 4.19 5.54 86.73 0.48 4.67 16 13 N -0.60 -26.66 3.33 -816.69 -2.72 -29.38 16 14 C 0.60 26.30 7.81 86.32 0.67 26.98 16 15 O -0.57 -28.62 17.12 -4.53 -0.08 -28.70 16 16 C -0.09 -3.37 6.97 24.28 0.17 -3.20 16 17 C -0.11 -3.08 10.63 22.53 0.24 -2.84 16 18 C -0.20 -4.68 10.63 22.54 0.24 -4.44 16 19 C 0.08 2.18 7.15 24.46 0.17 2.36 16 20 C -0.18 -3.68 6.44 24.07 0.16 -3.52 16 21 C -0.11 -2.01 10.15 21.69 0.22 -1.79 16 22 C -0.15 -1.87 10.15 21.12 0.21 -1.66 16 23 C -0.20 -1.97 11.22 66.81 0.75 -1.22 16 24 S 0.19 2.54 23.06 -56.49 -1.30 1.24 16 25 O -0.15 -4.77 8.24 -11.92 -0.10 -4.87 16 26 C 0.11 5.33 5.51 86.84 0.48 5.81 16 27 H 0.27 14.18 8.31 -92.70 -0.77 13.41 16 28 H 0.38 20.72 7.25 -74.06 -0.54 20.18 16 29 H 0.09 3.23 8.14 -2.39 -0.02 3.22 16 30 H 0.09 3.37 8.03 -2.39 -0.02 3.35 16 31 H 0.07 2.43 7.67 -2.38 -0.02 2.41 16 32 H 0.08 2.66 7.78 -2.39 -0.02 2.64 16 33 H 0.17 4.58 8.06 -2.91 -0.02 4.56 16 34 H 0.19 3.01 8.06 -2.91 -0.02 2.98 16 35 H 0.14 2.71 8.06 -2.91 -0.02 2.69 16 36 H 0.17 1.35 8.06 -2.91 -0.02 1.32 16 37 H 0.20 0.67 8.06 -2.91 -0.02 0.64 16 38 H 0.05 2.75 8.03 -2.38 -0.02 2.73 16 39 H 0.05 2.93 7.48 -2.39 -0.02 2.92 16 Total: -1.00 -66.70 349.95 1.30 -65.41 By element: Atomic # 1 Polarization: 33.29 SS G_CDS: 0.56 Total: 33.86 kcal Atomic # 6 Polarization: -3.00 SS G_CDS: 4.64 Total: 1.64 kcal Atomic # 7 Polarization: -76.81 SS G_CDS: -2.49 Total: -79.30 kcal Atomic # 8 Polarization: -64.41 SS G_CDS: -2.14 Total: -66.55 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.71 kcal Atomic # 16 Polarization: 2.54 SS G_CDS: -1.30 Total: 1.24 kcal Total: -66.70 1.30 -65.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363463708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.949 kcal (2) G-P(sol) polarization free energy of solvation -66.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds