Wall clock time and date at job start Tue Mar 31 2020 17:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86801 * 120.00195 * 2 1 4 4 H 1.48498 * 109.47397 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46564 * 299.99735 * 3 2 1 6 6 H 1.48491 * 109.47273 * 59.99344 * 3 2 1 7 7 C 1.39946 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00479 * 197.85661 * 7 2 1 9 9 C 1.41396 * 119.99943 * 17.86205 * 7 2 1 10 10 C 1.40714 * 120.24669 * 204.37323 * 9 7 2 11 11 C 1.37616 * 119.74954 * 180.02562 * 10 9 7 12 12 C 1.38636 * 120.24767 * 0.02562 * 11 10 9 13 13 C 1.50693 * 119.75306 * 179.97438 * 12 11 10 14 14 S 1.81401 * 109.47211 * 89.99839 * 13 12 11 15 15 O 1.42104 * 110.54153 * 68.37972 * 14 13 12 16 16 O 1.42102 * 110.54242 * 291.62943 * 14 13 12 17 17 N 1.65598 * 104.45028 * 179.97438 * 14 13 12 18 18 C 1.46505 * 119.99632 * 65.00634 * 17 14 13 19 19 C 1.50701 * 109.46898 * 164.99869 * 18 17 14 20 20 C 1.38623 * 120.45027 * 95.00016 * 19 18 17 21 21 C 1.38568 * 118.40339 * 179.69815 * 20 19 18 22 22 N 1.32351 * 119.10342 * 0.27740 * 21 20 19 23 23 C 1.31779 * 120.81847 * 359.97438 * 22 21 20 24 24 N 1.31811 * 121.75824 * 359.97438 * 23 22 21 25 25 C 1.38638 * 120.50003 * 0.25473 * 12 11 10 26 26 C 1.37623 * 120.24696 * 359.44593 * 25 12 11 27 27 H 0.96993 * 120.00060 * 0.02562 * 1 2 3 28 28 H 1.08009 * 120.12480 * 0.02562 * 10 9 7 29 29 H 1.08003 * 119.87881 * 180.02562 * 11 10 9 30 30 H 1.09002 * 109.47033 * 330.00382 * 13 12 11 31 31 H 1.08999 * 109.47378 * 210.00476 * 13 12 11 32 32 H 0.96998 * 120.00224 * 245.00267 * 17 14 13 33 33 H 1.08996 * 109.47502 * 44.99739 * 18 17 14 34 34 H 1.09004 * 109.46777 * 284.99603 * 18 17 14 35 35 H 1.07999 * 120.79876 * 359.96867 * 20 19 18 36 36 H 1.07994 * 120.45018 * 180.29231 * 21 20 19 37 37 H 1.08007 * 119.12489 * 180.02562 * 23 22 21 38 38 H 1.07999 * 119.87657 * 179.70520 * 25 12 11 39 39 H 1.08002 * 120.12599 * 180.27767 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3464 0.0006 5 1 1.8835 2.3963 -1.2126 6 1 1.8835 2.3965 1.2123 7 6 2.0080 -1.2120 0.0005 8 1 3.0490 -1.2344 0.2873 9 6 1.3521 -2.4071 -0.3745 10 6 1.8258 -3.6499 0.0850 11 6 1.1800 -4.8068 -0.2868 12 6 0.0669 -4.7511 -1.1113 13 6 -0.6315 -6.0249 -1.5120 14 16 -1.9231 -6.4137 -0.2991 15 8 -2.9770 -5.4631 -0.3709 16 8 -1.3442 -6.7729 0.9480 17 7 -2.6023 -7.8181 -0.8545 18 6 -1.8064 -9.0471 -0.9040 19 6 -2.7213 -10.2311 -1.0840 20 6 -2.9724 -10.7389 -2.3491 21 6 -3.8153 -11.8327 -2.4650 22 7 -4.3535 -12.3493 -1.3718 23 6 -4.0960 -11.8366 -0.1854 24 7 -3.2986 -10.7976 -0.0368 25 6 -0.4052 -3.5327 -1.5748 26 6 0.2212 -2.3627 -1.2108 27 1 -0.4850 0.8400 -0.0004 28 1 2.6931 -3.6956 0.7271 29 1 1.5416 -5.7617 0.0651 30 1 0.0913 -6.8400 -1.5468 31 1 -1.0833 -5.8976 -2.4958 32 1 -3.5271 -7.8270 -1.1471 33 1 -1.2491 -9.1567 0.0262 34 1 -1.1100 -8.9955 -1.7410 35 1 -2.5184 -10.2956 -3.2231 36 1 -4.0299 -12.2580 -3.4342 37 1 -4.5497 -12.2802 0.6886 38 1 -1.2704 -3.5014 -2.2205 39 1 -0.1509 -1.4143 -1.5693 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001424148708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:40:14 Heat of formation + Delta-G solvation = -7.977850 kcal Electronic energy + Delta-G solvation = -24773.845624 eV Core-core repulsion = 21001.277200 eV Total energy + Delta-G solvation = -3772.568425 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 333.093 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.39126 -37.80425 -36.70170 -36.10840 -35.43747 -34.19442 -33.63240 -32.25486 -31.53793 -29.46144 -27.87572 -27.19406 -24.77509 -24.26806 -23.06366 -21.19499 -20.44365 -19.16016 -17.97209 -17.92618 -17.46111 -17.09295 -16.09333 -15.90721 -15.84105 -15.46639 -15.09662 -14.60006 -14.42166 -14.31839 -13.93191 -13.87351 -13.64284 -13.14692 -12.69415 -12.19347 -12.09977 -11.91993 -11.81447 -11.61192 -11.53716 -11.39637 -11.28478 -11.16373 -11.05150 -11.03369 -10.62546 -10.37675 -10.08588 -9.85503 -9.64890 -9.60373 -9.53854 -9.23614 -7.63785 -7.47470 -6.93532 -4.51256 0.34987 0.56197 0.73775 2.60596 2.93794 2.99608 2.99943 3.04573 3.08071 3.45532 3.55839 3.78493 3.81119 3.99931 4.19368 4.45803 4.50389 4.55111 4.63556 4.91487 5.03649 5.15835 5.24835 5.31670 5.34619 5.52090 5.63722 5.95917 6.00249 6.17175 6.23828 6.59538 6.81703 6.85656 6.90230 7.07799 7.16457 7.43857 7.64409 7.69108 7.87469 7.88772 8.10849 8.46019 8.70374 8.78166 9.99768 Molecular weight = 333.09amu Principal moments of inertia in cm(-1) A = 0.039608 B = 0.002232 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.763738 B =12544.304897 C =12627.199576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.777 5.777 2 C 0.072 3.928 3 Si 0.913 3.087 4 H -0.259 1.259 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.446 4.446 8 H 0.084 0.916 9 C 0.117 3.883 10 C -0.225 4.225 11 C -0.067 4.067 12 C -0.240 4.240 13 C -0.517 4.517 14 S 2.573 3.427 15 O -0.958 6.958 16 O -0.958 6.958 17 N -1.124 6.124 18 C 0.164 3.836 19 C 0.169 3.831 20 C -0.213 4.213 21 C 0.147 3.853 22 N -0.521 5.521 23 C 0.295 3.705 24 N -0.503 5.503 25 C -0.080 4.080 26 C -0.167 4.167 27 H 0.285 0.715 28 H 0.099 0.901 29 H 0.096 0.904 30 H 0.120 0.880 31 H 0.123 0.877 32 H 0.412 0.588 33 H 0.103 0.897 34 H 0.086 0.914 35 H 0.153 0.847 36 H 0.171 0.829 37 H 0.199 0.801 38 H 0.095 0.905 39 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.573 -17.283 -7.262 19.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C -0.148 4.148 3 Si 0.736 3.264 4 H -0.182 1.182 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.476 4.476 8 H 0.102 0.898 9 C 0.113 3.887 10 C -0.245 4.245 11 C -0.087 4.087 12 C -0.245 4.245 13 C -0.648 4.648 14 S 2.674 3.326 15 O -0.948 6.948 16 O -0.947 6.947 17 N -0.880 5.880 18 C 0.037 3.963 19 C 0.021 3.979 20 C -0.236 4.236 21 C -0.019 4.019 22 N -0.235 5.235 23 C 0.007 3.993 24 N -0.217 5.217 25 C -0.100 4.100 26 C -0.187 4.187 27 H 0.096 0.904 28 H 0.117 0.883 29 H 0.114 0.886 30 H 0.138 0.862 31 H 0.141 0.859 32 H 0.244 0.756 33 H 0.121 0.879 34 H 0.104 0.896 35 H 0.171 0.829 36 H 0.188 0.812 37 H 0.215 0.785 38 H 0.113 0.887 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -5.346 -17.169 -5.562 18.822 hybrid contribution 0.463 0.829 -1.411 1.701 sum -4.883 -16.340 -6.972 18.424 Atomic orbital electron populations 1.69830 1.07746 1.29798 1.32758 1.26041 0.94812 1.01783 0.92150 0.86183 0.80965 0.80438 0.78767 1.18203 1.19507 1.19766 1.19779 0.98342 0.91148 1.38283 0.89829 1.17752 0.90798 0.92220 0.87883 1.20981 1.04099 0.92560 1.06908 1.20467 0.94544 0.97226 0.96420 1.18080 1.03314 0.90371 1.12750 1.28915 1.15108 1.05758 1.15039 1.06887 0.76349 0.72315 0.77096 1.93559 1.53970 1.59920 1.87373 1.93537 1.79625 1.81792 1.39789 1.55993 1.23421 1.23489 1.85078 1.20155 0.91449 0.80387 1.04276 1.21670 0.93014 0.94316 0.88911 1.22884 1.01677 0.99420 0.99598 1.23287 0.89703 0.90946 0.97933 1.68439 1.23730 1.31524 0.99829 1.25089 0.90629 0.88499 0.95052 1.68323 1.08767 1.09978 1.34638 1.20612 0.98123 0.92436 0.98835 1.21327 0.99393 0.96783 1.01186 0.90378 0.88292 0.88602 0.86201 0.85893 0.75569 0.87866 0.89558 0.82943 0.81235 0.78492 0.88691 0.85946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.55 10.95 55.55 0.61 -18.94 16 2 C 0.07 1.74 5.14 -17.34 -0.09 1.66 16 3 Si 0.91 17.83 29.60 -169.99 -5.03 12.80 16 4 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 5 H -0.27 -5.18 7.11 56.52 0.40 -4.77 16 6 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 7 C -0.45 -11.36 9.05 -37.74 -0.34 -11.71 16 8 H 0.08 2.02 7.91 -52.48 -0.41 1.61 16 9 C 0.12 3.03 5.57 -106.82 -0.60 2.44 16 10 C -0.23 -5.39 9.80 -38.87 -0.38 -5.77 16 11 C -0.07 -1.46 9.67 -39.66 -0.38 -1.84 16 12 C -0.24 -5.02 5.16 -104.33 -0.54 -5.56 16 13 C -0.52 -7.86 6.19 36.00 0.22 -7.64 16 14 S 2.57 42.93 5.44 -107.50 -0.58 42.35 16 15 O -0.96 -19.62 18.08 -57.54 -1.04 -20.66 16 16 O -0.96 -19.24 17.50 -57.54 -1.01 -20.25 16 17 N -1.12 -13.23 5.88 -11.65 -0.07 -13.30 16 18 C 0.16 1.58 6.49 -5.19 -0.03 1.55 16 19 C 0.17 1.61 6.22 -82.24 -0.51 1.10 16 20 C -0.21 -1.46 9.84 -39.32 -0.39 -1.85 16 21 C 0.15 1.02 11.30 -17.21 -0.19 0.82 16 22 N -0.52 -4.73 10.44 -14.58 -0.15 -4.89 16 23 C 0.30 2.74 12.28 -92.15 -1.13 1.61 16 24 N -0.50 -5.58 10.38 -10.79 -0.11 -5.70 16 25 C -0.08 -1.84 9.67 -39.66 -0.38 -2.22 16 26 C -0.17 -4.24 8.70 -38.87 -0.34 -4.58 16 27 H 0.29 6.45 8.30 -40.82 -0.34 6.11 16 28 H 0.10 2.20 8.06 -52.48 -0.42 1.77 16 29 H 0.10 1.81 8.06 -52.48 -0.42 1.39 16 30 H 0.12 1.42 8.08 -51.92 -0.42 1.00 16 31 H 0.12 1.53 8.08 -51.92 -0.42 1.11 16 32 H 0.41 4.37 8.61 -34.47 -0.30 4.07 16 33 H 0.10 1.11 7.70 -51.93 -0.40 0.71 16 34 H 0.09 0.52 8.06 -51.93 -0.42 0.10 16 35 H 0.15 0.59 8.06 -52.49 -0.42 0.17 16 36 H 0.17 0.60 8.06 -52.49 -0.42 0.18 16 37 H 0.20 1.26 8.06 -52.48 -0.42 0.84 16 38 H 0.09 1.95 8.06 -52.49 -0.42 1.53 16 39 H 0.12 3.17 6.16 -52.49 -0.32 2.85 16 LS Contribution 355.90 15.07 5.36 5.36 Total: -1.00 -34.52 355.90 -11.47 -45.99 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -4.36 Total: 9.22 kcal Atomic # 6 Polarization: -26.91 SS G_CDS: -5.09 Total: -31.99 kcal Atomic # 7 Polarization: -43.10 SS G_CDS: 0.28 Total: -42.83 kcal Atomic # 8 Polarization: -38.86 SS G_CDS: -2.05 Total: -40.90 kcal Atomic # 14 Polarization: 17.83 SS G_CDS: -5.03 Total: 12.80 kcal Atomic # 16 Polarization: 42.93 SS G_CDS: -0.58 Total: 42.35 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.52 -11.47 -45.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001424148708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.012 kcal (2) G-P(sol) polarization free energy of solvation -34.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds