Wall clock time and date at job start Tue Mar 31 2020 16:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38287 * 119.92491 * 2 1 4 4 C 1.38109 * 120.06576 * 180.02562 * 3 2 1 5 5 C 1.38878 * 119.92977 * 0.23040 * 4 3 2 6 6 N 1.39927 * 120.06630 * 179.72286 * 5 4 3 7 7 C 1.34778 * 120.00426 * 33.29281 * 6 5 4 8 8 O 1.21296 * 119.99695 * 5.27234 * 7 6 5 9 9 C 1.50692 * 120.00463 * 185.27084 * 7 6 5 10 10 C 1.50699 * 109.47555 * 179.97438 * 9 7 6 11 11 N 1.29949 * 126.28510 * 90.02111 * 10 9 7 12 12 O 1.21306 * 110.24786 * 179.97438 * 11 10 9 13 13 C 1.33639 * 109.81210 * 0.02562 * 12 11 10 14 14 C 1.50700 * 126.55083 * 180.02562 * 13 12 11 15 15 S 1.81007 * 109.46863 * 269.97501 * 14 13 12 16 16 C 1.76196 * 99.99962 * 180.02562 * 15 14 13 17 17 H 1.08002 * 120.00126 * 359.97438 * 16 15 14 18 18 C 1.38795 * 120.00280 * 179.97438 * 16 15 14 19 19 N 1.31627 * 120.00572 * 179.97438 * 18 16 15 20 20 Si 1.86802 * 119.99569 * 359.97438 * 18 16 15 21 21 H 1.48496 * 109.47674 * 90.00156 * 20 18 16 22 22 H 1.48507 * 109.46810 * 210.00023 * 20 18 16 23 23 H 1.48504 * 109.47158 * 329.99458 * 20 18 16 24 24 N 1.31129 * 106.89910 * 359.76486 * 13 12 11 25 25 C 1.38867 * 119.85665 * 359.49527 * 5 4 3 26 26 C 1.38108 * 119.93280 * 0.50320 * 25 5 4 27 27 H 1.08997 * 109.47196 * 90.00330 * 1 2 3 28 28 H 1.09001 * 109.46970 * 210.00363 * 1 2 3 29 29 H 1.09004 * 109.47548 * 329.99737 * 1 2 3 30 30 H 1.07999 * 119.96687 * 359.97438 * 3 2 1 31 31 H 1.07999 * 120.03249 * 179.97438 * 4 3 2 32 32 H 0.96996 * 119.99827 * 213.28925 * 6 5 4 33 33 H 1.08996 * 109.47387 * 300.00010 * 9 7 6 34 34 H 1.09005 * 109.46988 * 59.99646 * 9 7 6 35 35 H 1.08999 * 109.47081 * 29.96580 * 14 13 12 36 36 H 1.08997 * 109.47536 * 149.97220 * 14 13 12 37 37 H 0.97003 * 120.00100 * 179.97438 * 19 18 16 38 38 H 1.08003 * 120.03350 * 180.23156 * 25 5 4 39 39 H 1.07996 * 119.96656 * 179.74852 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1985 0.0000 4 6 3.5780 1.2019 -0.0005 5 6 4.2738 0.0000 -0.0059 6 7 5.6731 0.0002 -0.0123 7 6 6.3499 0.9747 0.6270 8 8 5.7503 1.7966 1.2874 9 6 7.8516 1.0431 0.5216 10 6 8.3585 2.2153 1.3216 11 7 8.7049 2.1994 2.5740 12 8 9.0695 3.3026 2.9227 13 6 8.9874 4.1527 1.8949 14 6 9.3464 5.6163 1.9098 15 16 7.8897 6.5901 2.3638 16 6 8.5753 8.2121 2.3042 17 1 9.6140 8.3500 2.0426 18 6 7.7805 9.3126 2.5934 19 7 8.2928 10.5243 2.5494 20 14 5.9837 9.0740 3.0452 21 1 5.8605 8.9107 4.5160 22 1 5.2027 10.2604 2.6118 23 1 5.4595 7.8615 2.3668 24 7 8.5402 3.4688 0.8693 25 6 3.5780 -1.2017 -0.0001 26 6 2.1969 -1.1984 0.0004 27 1 -0.3633 -0.0001 -1.0276 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3634 0.8900 0.5139 30 1 1.6551 2.1328 -0.0004 31 1 4.1162 2.1382 -0.0010 32 1 6.1560 -0.7011 -0.4769 33 1 8.2855 0.1222 0.9109 34 1 8.1372 1.1659 -0.5232 35 1 10.1395 5.7884 2.6374 36 1 9.6900 5.9163 0.9199 37 1 7.7372 11.2934 2.7512 38 1 4.1163 -2.1380 -0.0005 39 1 1.6553 -2.1327 0.0008 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000109445009.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:55:40 Heat of formation + Delta-G solvation = 55.362526 kcal Electronic energy + Delta-G solvation = -24355.316110 eV Core-core repulsion = 20585.494330 eV Total energy + Delta-G solvation = -3769.821780 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 333.093 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -45.36912 -40.82551 -38.92878 -35.90666 -35.30612 -33.66475 -32.54119 -32.06848 -31.17815 -30.18301 -28.54335 -26.54831 -25.73729 -23.71019 -23.25574 -22.42683 -21.33421 -20.53373 -18.39161 -18.03296 -17.84057 -17.19330 -17.03460 -15.94735 -15.66966 -15.16356 -15.03712 -14.82275 -14.49146 -14.35023 -14.03897 -13.97473 -13.89082 -13.65172 -13.07279 -12.94483 -12.88651 -12.49151 -12.35333 -11.98385 -11.87205 -11.66683 -11.39230 -11.33545 -11.08897 -10.99714 -10.80940 -10.53217 -10.16248 -10.00211 -9.57168 -9.15183 -9.10019 -8.73026 -8.26109 -7.11266 -6.37715 -4.13937 0.98163 1.18514 1.23834 2.08905 2.27603 2.72286 2.94013 3.06554 3.26947 3.42724 3.46586 3.54986 3.60659 4.04706 4.23964 4.31717 4.57963 4.60964 4.66042 4.78304 4.81200 4.90814 5.01761 5.02748 5.15466 5.26089 5.33187 5.35394 5.49599 5.58093 5.64786 5.77319 5.80634 6.02764 6.05087 6.07472 6.15579 6.25500 6.40390 6.80005 6.99509 7.77410 7.85116 8.32849 8.33809 9.06656 10.71010 Molecular weight = 333.09amu Principal moments of inertia in cm(-1) A = 0.011744 B = 0.002827 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2383.558894 B = 9900.453990 C =11976.149007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.104 4.104 3 C -0.099 4.099 4 C -0.115 4.115 5 C 0.142 3.858 6 N -0.674 5.674 7 C 0.517 3.483 8 O -0.496 6.496 9 C -0.043 4.043 10 C 0.178 3.822 11 N -0.379 5.379 12 O 0.084 5.916 13 C 0.225 3.775 14 C -0.013 4.013 15 S -0.161 6.161 16 C -0.513 4.513 17 H 0.096 0.904 18 C 0.099 3.901 19 N -0.874 5.874 20 Si 0.854 3.146 21 H -0.266 1.266 22 H -0.271 1.271 23 H -0.237 1.237 24 N -0.471 5.471 25 C -0.143 4.143 26 C -0.103 4.103 27 H 0.069 0.931 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.126 0.874 31 H 0.137 0.863 32 H 0.411 0.589 33 H 0.123 0.877 34 H 0.130 0.870 35 H 0.110 0.890 36 H 0.118 0.882 37 H 0.273 0.727 38 H 0.125 0.875 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.401 -25.780 -7.914 27.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.105 4.105 3 C -0.118 4.118 4 C -0.135 4.135 5 C 0.049 3.951 6 N -0.321 5.321 7 C 0.302 3.698 8 O -0.368 6.368 9 C -0.084 4.084 10 C -0.096 4.096 11 N -0.086 5.086 12 O 0.024 5.976 13 C 0.005 3.995 14 C -0.162 4.162 15 S 0.065 5.935 16 C -0.660 4.660 17 H 0.114 0.886 18 C -0.111 4.111 19 N -0.510 5.510 20 Si 0.679 3.321 21 H -0.190 1.190 22 H -0.196 1.196 23 H -0.161 1.161 24 N -0.205 5.205 25 C -0.163 4.163 26 C -0.122 4.122 27 H 0.087 0.913 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.144 0.856 31 H 0.154 0.846 32 H 0.247 0.753 33 H 0.141 0.859 34 H 0.148 0.852 35 H 0.128 0.872 36 H 0.137 0.863 37 H 0.083 0.917 38 H 0.143 0.857 39 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -8.976 -26.057 -7.085 28.456 hybrid contribution 0.782 0.384 -0.220 0.899 sum -8.194 -25.673 -7.305 27.921 Atomic orbital electron populations 1.20767 0.91131 1.02791 1.02224 1.19937 0.96229 0.93114 1.01181 1.20986 0.93557 0.97845 0.99387 1.21235 0.94348 0.97827 1.00055 1.17699 0.82171 0.94188 1.01079 1.43408 1.04872 1.29402 1.54393 1.20441 0.89479 0.81023 0.78828 1.90841 1.69828 1.38418 1.37680 1.19764 0.91866 0.94808 1.01971 1.24662 1.01604 0.93935 0.89414 1.74538 1.17591 1.01681 1.14837 1.85291 1.61014 1.13476 1.37791 1.28145 0.93783 0.96659 0.80918 1.21715 1.03747 0.82976 1.07727 1.84815 1.13079 1.04704 1.90935 1.22096 1.00838 0.87678 1.55404 0.88619 1.24679 0.98839 0.94087 0.93462 1.69917 1.36931 0.97903 1.46225 0.86782 0.84711 0.80123 0.80509 1.19042 1.19646 1.16086 1.71862 1.18327 1.01825 1.28492 1.20837 0.94550 0.96240 1.04697 1.20788 0.93259 0.97624 1.00534 0.91258 0.91660 0.91493 0.85582 0.84562 0.75266 0.85890 0.85183 0.87167 0.86344 0.91702 0.85718 0.85752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.77 10.01 36.01 0.36 -0.41 16 2 C -0.10 -0.98 5.88 -104.59 -0.62 -1.59 16 3 C -0.10 -1.11 9.69 -39.61 -0.38 -1.49 16 4 C -0.11 -1.47 8.66 -39.39 -0.34 -1.81 16 5 C 0.14 1.54 6.28 -83.69 -0.53 1.02 16 6 N -0.67 -6.06 5.34 -9.86 -0.05 -6.12 16 7 C 0.52 6.42 7.56 -10.99 -0.08 6.34 16 8 O -0.50 -8.84 13.72 5.54 0.08 -8.77 16 9 C -0.04 -0.43 6.33 -29.04 -0.18 -0.62 16 10 C 0.18 2.81 6.71 -156.37 -1.05 1.76 16 11 N -0.38 -6.54 12.16 30.90 0.38 -6.17 16 12 O 0.08 1.52 11.31 18.11 0.20 1.72 16 13 C 0.23 4.12 7.77 -13.06 -0.10 4.02 16 14 C -0.01 -0.24 6.30 36.01 0.23 -0.02 16 15 S -0.16 -3.87 19.39 -107.50 -2.08 -5.96 16 16 C -0.51 -14.15 10.04 30.94 0.31 -13.84 16 17 H 0.10 2.73 8.03 -52.49 -0.42 2.31 16 18 C 0.10 2.80 5.50 -17.43 -0.10 2.71 16 19 N -0.87 -25.64 13.97 55.49 0.78 -24.86 16 20 Si 0.85 21.20 27.74 -169.99 -4.71 16.48 16 21 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.24 -5.89 6.74 56.52 0.38 -5.51 16 24 N -0.47 -8.46 11.55 -9.87 -0.11 -8.58 16 25 C -0.14 -1.24 9.96 -39.40 -0.39 -1.63 16 26 C -0.10 -0.88 9.69 -39.61 -0.38 -1.26 16 27 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.37 8.08 -51.93 -0.42 -0.05 16 29 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 30 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 31 H 0.14 2.06 6.41 -52.49 -0.34 1.72 16 32 H 0.41 1.90 8.82 -40.82 -0.36 1.54 16 33 H 0.12 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.13 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.11 1.85 8.14 -51.92 -0.42 1.43 16 36 H 0.12 2.10 8.14 -51.92 -0.42 1.68 16 37 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 38 H 0.12 0.74 8.06 -52.48 -0.42 0.32 16 39 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 LS Contribution 359.14 15.07 5.41 5.41 Total: -1.00 -35.38 359.14 -7.88 -43.26 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: -4.50 Total: 0.41 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: -3.26 Total: -6.84 kcal Atomic # 7 Polarization: -46.71 SS G_CDS: 0.98 Total: -45.72 kcal Atomic # 8 Polarization: -7.33 SS G_CDS: 0.28 Total: -7.05 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.71 Total: 16.48 kcal Atomic # 16 Polarization: -3.87 SS G_CDS: -2.08 Total: -5.96 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -35.38 -7.88 -43.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109445009.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.620 kcal (2) G-P(sol) polarization free energy of solvation -35.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds