Wall clock time and date at job start Tue Mar 31 2020 16:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38287 * 119.92491 * 2 1 4 4 C 1.38109 * 120.06576 * 180.02562 * 3 2 1 5 5 C 1.38878 * 119.92977 * 0.23040 * 4 3 2 6 6 N 1.39927 * 120.06630 * 179.72286 * 5 4 3 7 7 C 1.34778 * 120.00426 * 33.29281 * 6 5 4 8 8 O 1.21296 * 119.99695 * 5.27234 * 7 6 5 9 9 C 1.50692 * 120.00463 * 185.27084 * 7 6 5 10 10 C 1.50699 * 109.47555 * 179.97438 * 9 7 6 11 11 N 1.29949 * 126.28510 * 90.02111 * 10 9 7 12 12 O 1.21306 * 110.24786 * 179.97438 * 11 10 9 13 13 C 1.33639 * 109.81210 * 0.02562 * 12 11 10 14 14 C 1.50700 * 126.55083 * 180.02562 * 13 12 11 15 15 S 1.81007 * 109.46863 * 269.97501 * 14 13 12 16 16 C 1.76196 * 99.99962 * 180.02562 * 15 14 13 17 17 H 1.08002 * 120.00126 * 359.97438 * 16 15 14 18 18 C 1.38795 * 120.00280 * 179.97438 * 16 15 14 19 19 N 1.31627 * 120.00572 * 179.97438 * 18 16 15 20 20 Si 1.86802 * 119.99569 * 359.97438 * 18 16 15 21 21 H 1.48496 * 109.47674 * 90.00156 * 20 18 16 22 22 H 1.48507 * 109.46810 * 210.00023 * 20 18 16 23 23 H 1.48504 * 109.47158 * 329.99458 * 20 18 16 24 24 N 1.31129 * 106.89910 * 359.76486 * 13 12 11 25 25 C 1.38867 * 119.85665 * 359.49527 * 5 4 3 26 26 C 1.38108 * 119.93280 * 0.50320 * 25 5 4 27 27 H 1.08997 * 109.47196 * 90.00330 * 1 2 3 28 28 H 1.09001 * 109.46970 * 210.00363 * 1 2 3 29 29 H 1.09004 * 109.47548 * 329.99737 * 1 2 3 30 30 H 1.07999 * 119.96687 * 359.97438 * 3 2 1 31 31 H 1.07999 * 120.03249 * 179.97438 * 4 3 2 32 32 H 0.96996 * 119.99827 * 213.28925 * 6 5 4 33 33 H 1.08996 * 109.47387 * 300.00010 * 9 7 6 34 34 H 1.09005 * 109.46988 * 59.99646 * 9 7 6 35 35 H 1.08999 * 109.47081 * 29.96580 * 14 13 12 36 36 H 1.08997 * 109.47536 * 149.97220 * 14 13 12 37 37 H 0.97003 * 120.00100 * 179.97438 * 19 18 16 38 38 H 1.08003 * 120.03350 * 180.23156 * 25 5 4 39 39 H 1.07996 * 119.96656 * 179.74852 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1985 0.0000 4 6 3.5780 1.2019 -0.0005 5 6 4.2738 0.0000 -0.0059 6 7 5.6731 0.0002 -0.0123 7 6 6.3499 0.9747 0.6270 8 8 5.7503 1.7966 1.2874 9 6 7.8516 1.0431 0.5216 10 6 8.3585 2.2153 1.3216 11 7 8.7049 2.1994 2.5740 12 8 9.0695 3.3026 2.9227 13 6 8.9874 4.1527 1.8949 14 6 9.3464 5.6163 1.9098 15 16 7.8897 6.5901 2.3638 16 6 8.5753 8.2121 2.3042 17 1 9.6140 8.3500 2.0426 18 6 7.7805 9.3126 2.5934 19 7 8.2928 10.5243 2.5494 20 14 5.9837 9.0740 3.0452 21 1 5.8605 8.9107 4.5160 22 1 5.2027 10.2604 2.6118 23 1 5.4595 7.8615 2.3668 24 7 8.5402 3.4688 0.8693 25 6 3.5780 -1.2017 -0.0001 26 6 2.1969 -1.1984 0.0004 27 1 -0.3633 -0.0001 -1.0276 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3634 0.8900 0.5139 30 1 1.6551 2.1328 -0.0004 31 1 4.1162 2.1382 -0.0010 32 1 6.1560 -0.7011 -0.4769 33 1 8.2855 0.1222 0.9109 34 1 8.1372 1.1659 -0.5232 35 1 10.1395 5.7884 2.6374 36 1 9.6900 5.9163 0.9199 37 1 7.7372 11.2934 2.7512 38 1 4.1163 -2.1380 -0.0005 39 1 1.6553 -2.1327 0.0008 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000109445009.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:55:40 Heat of formation + Delta-G solvation = 30.116387 kcal Electronic energy + Delta-G solvation = -24356.410865 eV Core-core repulsion = 20585.494330 eV Total energy + Delta-G solvation = -3770.916535 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 333.093 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -46.70621 -41.69541 -39.75568 -37.16763 -36.21377 -34.98557 -34.70906 -32.88035 -31.92461 -31.14913 -29.97701 -27.90461 -27.26216 -24.95046 -24.10774 -23.49149 -22.30516 -21.45544 -19.98319 -19.44913 -18.97326 -18.36501 -18.15409 -17.18789 -16.85925 -16.44748 -16.30312 -16.10569 -15.75864 -15.60943 -15.14523 -14.93892 -14.69498 -14.63333 -14.45107 -14.36111 -13.77569 -13.51142 -13.36491 -13.14797 -13.10814 -13.03579 -12.99260 -12.69460 -12.55965 -12.18910 -12.07216 -11.97640 -11.44100 -11.22461 -11.20750 -10.97711 -10.60078 -9.92054 -9.12038 -9.02451 -8.54574 -6.28968 -0.21379 0.20492 0.41872 0.76250 1.18854 1.28442 1.39947 1.44186 1.52859 1.72442 1.93271 2.19665 2.44793 2.60847 2.79320 2.83490 2.87934 3.49258 3.74758 3.91612 3.99178 4.04875 4.07981 4.11995 4.34658 4.38625 4.45388 4.46505 4.55957 4.68380 4.79439 4.82069 4.85070 5.04339 5.12192 5.30734 5.36105 5.48008 5.67401 5.68868 6.05208 6.11398 6.28388 6.89410 6.96910 6.98541 8.57477 Molecular weight = 333.09amu Principal moments of inertia in cm(-1) A = 0.011744 B = 0.002827 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2383.558894 B = 9900.453990 C =11976.149007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.107 4.107 3 C -0.120 4.120 4 C -0.145 4.145 5 C 0.124 3.876 6 N -0.652 5.652 7 C 0.515 3.485 8 O -0.561 6.561 9 C -0.040 4.040 10 C 0.182 3.818 11 N -0.390 5.390 12 O 0.073 5.927 13 C 0.217 3.783 14 C 0.004 3.996 15 S -0.189 6.189 16 C -0.517 4.517 17 H 0.075 0.925 18 C 0.051 3.949 19 N -0.910 5.910 20 Si 0.908 3.092 21 H -0.261 1.261 22 H -0.258 1.258 23 H -0.241 1.241 24 N -0.483 5.483 25 C -0.133 4.133 26 C -0.103 4.103 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.063 0.937 30 H 0.123 0.877 31 H 0.101 0.899 32 H 0.435 0.565 33 H 0.167 0.833 34 H 0.165 0.835 35 H 0.131 0.869 36 H 0.130 0.870 37 H 0.279 0.721 38 H 0.160 0.840 39 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.203 -29.516 -8.750 31.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.108 4.108 3 C -0.139 4.139 4 C -0.165 4.165 5 C 0.030 3.970 6 N -0.299 5.299 7 C 0.302 3.698 8 O -0.438 6.438 9 C -0.081 4.081 10 C -0.091 4.091 11 N -0.100 5.100 12 O 0.017 5.983 13 C -0.004 4.004 14 C -0.144 4.144 15 S 0.037 5.963 16 C -0.664 4.664 17 H 0.093 0.907 18 C -0.155 4.155 19 N -0.548 5.548 20 Si 0.730 3.270 21 H -0.185 1.185 22 H -0.182 1.182 23 H -0.166 1.166 24 N -0.218 5.218 25 C -0.153 4.153 26 C -0.121 4.121 27 H 0.099 0.901 28 H 0.101 0.899 29 H 0.082 0.918 30 H 0.141 0.859 31 H 0.119 0.881 32 H 0.275 0.725 33 H 0.184 0.816 34 H 0.183 0.817 35 H 0.149 0.851 36 H 0.148 0.852 37 H 0.088 0.912 38 H 0.178 0.822 39 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -9.757 -29.831 -7.943 32.375 hybrid contribution 1.055 1.381 -0.030 1.738 sum -8.702 -28.450 -7.973 30.801 Atomic orbital electron populations 1.20819 0.89314 1.03500 1.03170 1.20273 0.97667 0.92765 1.00111 1.21102 0.93228 0.98959 1.00563 1.21136 0.95194 0.97556 1.02603 1.17870 0.82891 0.94321 1.01879 1.43184 1.04380 1.29046 1.53312 1.20837 0.90313 0.80591 0.78034 1.90831 1.71147 1.40991 1.40795 1.20141 0.90133 0.94386 1.03425 1.25570 0.99812 0.94534 0.89218 1.74528 1.18466 1.01367 1.15663 1.85275 1.61405 1.13805 1.37852 1.27934 0.94561 0.96482 0.81411 1.21608 1.01388 0.82547 1.08890 1.84688 1.16637 1.03615 1.91407 1.22223 1.00095 0.89631 1.54494 0.90737 1.25453 1.02489 0.93962 0.93578 1.69987 1.38546 0.98735 1.47512 0.85971 0.80483 0.80207 0.80336 1.18542 1.18193 1.16566 1.71880 1.18174 1.02989 1.28804 1.21219 0.94871 0.96521 1.02724 1.21244 0.93481 0.98440 0.98969 0.90099 0.89942 0.91826 0.85871 0.88076 0.72498 0.81588 0.81707 0.85100 0.85206 0.91178 0.82221 0.82509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.31 10.01 71.24 0.71 -0.60 16 2 C -0.11 -1.87 5.88 -19.84 -0.12 -1.99 16 3 C -0.12 -2.77 9.69 22.25 0.22 -2.56 16 4 C -0.14 -3.89 8.66 22.39 0.19 -3.70 16 5 C 0.12 2.56 6.28 38.15 0.24 2.80 16 6 N -0.65 -10.40 5.34 -303.50 -1.62 -12.02 16 7 C 0.52 12.21 7.56 87.65 0.66 12.88 16 8 O -0.56 -20.53 13.72 -3.08 -0.04 -20.58 16 9 C -0.04 -0.71 6.33 29.10 0.18 -0.52 16 10 C 0.18 5.51 6.71 138.46 0.93 6.44 16 11 N -0.39 -13.12 12.16 -60.30 -0.73 -13.85 16 12 O 0.07 2.61 11.31 74.86 0.85 3.46 16 13 C 0.22 7.84 7.77 88.38 0.69 8.52 16 14 C 0.00 0.16 6.30 71.24 0.45 0.61 16 15 S -0.19 -9.19 19.39 -56.49 -1.10 -10.29 16 16 C -0.52 -29.03 10.04 67.95 0.68 -28.35 16 17 H 0.07 4.37 8.03 -2.91 -0.02 4.35 16 18 C 0.05 2.95 5.50 84.86 0.47 3.42 16 19 N -0.91 -54.24 13.97 21.65 0.30 -53.93 16 20 Si 0.91 44.22 27.74 68.60 1.90 46.12 16 21 H -0.26 -12.40 7.11 99.48 0.71 -11.69 16 22 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 23 H -0.24 -11.86 6.74 99.48 0.67 -11.19 16 24 N -0.48 -17.01 11.55 -303.19 -3.50 -20.51 16 25 C -0.13 -1.91 9.96 22.39 0.22 -1.68 16 26 C -0.10 -1.43 9.69 22.25 0.22 -1.21 16 27 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.08 0.69 8.08 -2.39 -0.02 0.67 16 29 H 0.06 0.79 8.08 -2.38 -0.02 0.77 16 30 H 0.12 2.70 8.06 -2.91 -0.02 2.67 16 31 H 0.10 3.38 6.41 -2.91 -0.02 3.37 16 32 H 0.43 2.45 8.82 -92.71 -0.82 1.63 16 33 H 0.17 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.17 1.74 8.14 -2.38 -0.02 1.72 16 35 H 0.13 4.32 8.14 -2.40 -0.02 4.30 16 36 H 0.13 4.55 8.14 -2.40 -0.02 4.53 16 37 H 0.28 15.37 8.31 -92.71 -0.77 14.60 16 38 H 0.16 1.11 8.06 -2.91 -0.02 1.09 16 39 H 0.16 1.15 8.06 -2.91 -0.02 1.13 16 Total: -1.00 -80.56 359.14 2.05 -78.51 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: 0.25 Total: 9.04 kcal Atomic # 6 Polarization: -11.69 SS G_CDS: 5.74 Total: -5.95 kcal Atomic # 7 Polarization: -94.76 SS G_CDS: -5.55 Total: -100.32 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: 0.80 Total: -17.11 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 1.90 Total: 46.12 kcal Atomic # 16 Polarization: -9.19 SS G_CDS: -1.10 Total: -10.29 kcal Total: -80.56 2.05 -78.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109445009.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.622 kcal (2) G-P(sol) polarization free energy of solvation -80.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds