Wall clock time and date at job start Tue Mar 31 2020 17:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35524 * 116.99985 * 2 1 4 4 C 1.39348 * 120.02793 * 179.97438 * 3 2 1 5 5 C 1.38411 * 118.04235 * 180.02562 * 4 3 2 6 6 C 1.39996 * 117.96506 * 0.02562 * 5 4 3 7 7 C 1.47895 * 120.11908 * 180.02562 * 6 5 4 8 8 O 1.21566 * 120.00076 * 359.97438 * 7 6 5 9 9 N 1.34778 * 120.00029 * 179.97438 * 7 6 5 10 10 C 1.39987 * 119.99963 * 175.62309 * 9 7 6 11 11 C 1.38740 * 120.08007 * 34.60787 * 10 9 7 12 12 C 1.38174 * 120.01653 * 179.76959 * 11 10 9 13 13 C 1.38554 * 120.18456 * 0.50733 * 12 11 10 14 14 F 1.35096 * 119.92509 * 179.76799 * 13 12 11 15 15 C 1.38348 * 120.15676 * 359.74474 * 13 12 11 16 16 C 1.38736 * 119.97857 * 0.02562 * 15 13 12 17 17 O 1.35773 * 120.08976 * 179.97438 * 16 15 13 18 18 C 1.34801 * 117.00134 * 5.42649 * 17 16 15 19 19 H 1.08007 * 119.99883 * 354.95215 * 18 17 16 20 20 C 1.38635 * 120.00409 * 174.95740 * 18 17 16 21 21 N 1.31567 * 120.00492 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 119.99625 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.47291 * 90.00170 * 22 20 18 24 24 H 1.48500 * 109.47277 * 210.00285 * 22 20 18 25 25 H 1.48505 * 109.47394 * 330.00144 * 22 20 18 26 26 N 1.32766 * 119.76141 * 359.97438 * 6 5 4 27 27 N 1.28354 * 122.08450 * 0.02562 * 26 6 5 28 28 H 1.09005 * 109.46986 * 299.99893 * 1 2 3 29 29 H 1.08999 * 109.47466 * 59.99990 * 1 2 3 30 30 H 1.09000 * 109.46871 * 180.02562 * 1 2 3 31 31 H 1.08010 * 120.98007 * 0.04523 * 4 3 2 32 32 H 1.07994 * 121.01612 * 180.02562 * 5 4 3 33 33 H 0.96999 * 119.99515 * 355.62183 * 9 7 6 34 34 H 1.07998 * 119.98793 * 0.02562 * 11 10 9 35 35 H 1.08006 * 119.90941 * 180.23600 * 12 11 10 36 36 H 1.07998 * 120.00976 * 180.02562 * 15 13 12 37 37 H 0.96997 * 120.00347 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2075 0.0000 4 6 3.4358 1.2811 0.0005 5 6 4.0211 2.5354 0.0011 6 6 3.1782 3.6532 0.0016 7 6 3.7527 5.0160 0.0016 8 8 4.9589 5.1671 0.0016 9 7 2.9390 6.0904 0.0015 10 6 3.4800 7.3781 0.0941 11 6 4.6996 7.6645 -0.5021 12 6 5.2301 8.9373 -0.4140 13 6 4.5524 9.9282 0.2778 14 9 5.0782 11.1696 0.3646 15 6 3.3382 9.6494 0.8795 16 6 2.7971 8.3750 0.7912 17 8 1.6060 8.0988 1.3814 18 6 0.9461 9.1324 1.9411 19 1 1.4053 10.1093 1.9793 20 6 -0.3221 8.9417 2.4678 21 7 -0.9664 9.9506 3.0137 22 14 -1.1166 7.2524 2.4013 23 1 -0.7637 6.4908 3.6263 24 1 -2.5917 7.4020 2.3191 25 1 -0.6259 6.5212 1.2054 26 7 1.8611 3.4854 0.0010 27 7 1.3222 2.3205 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 4.0399 0.3858 0.0002 32 1 5.0951 2.6483 0.0011 33 1 1.9785 5.9712 -0.0626 34 1 5.2324 6.8934 -1.0387 35 1 6.1779 9.1593 -0.8820 36 1 2.8118 10.4237 1.4178 37 1 -1.8538 9.8172 3.3819 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120018146.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:42:34 Heat of formation + Delta-G solvation = -43.646711 kcal Electronic energy + Delta-G solvation = -27408.053145 eV Core-core repulsion = 23067.724826 eV Total energy + Delta-G solvation = -4340.328319 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.096 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -48.33088 -41.64911 -40.25119 -39.06333 -38.44836 -36.53846 -34.46483 -33.53920 -32.52893 -32.21998 -29.66437 -28.71743 -27.89633 -25.69327 -25.35518 -24.29408 -22.71084 -21.75511 -20.79944 -19.06759 -18.54736 -18.29365 -18.09602 -17.56955 -16.72052 -16.65280 -15.66724 -15.39441 -15.35433 -15.04423 -15.00920 -14.79793 -14.49234 -14.14781 -14.09255 -13.92995 -13.77209 -13.46198 -13.33455 -12.51182 -12.42409 -12.36997 -12.18550 -11.94152 -11.88339 -11.47851 -10.97777 -10.83616 -10.66702 -10.40425 -10.11918 -10.01814 -9.79895 -9.60664 -9.51709 -9.00579 -8.03638 -7.33543 -6.55245 -4.23015 0.22916 0.40253 1.66016 1.97304 2.44082 2.56141 3.02504 3.16670 3.19961 3.33675 3.42859 3.63547 3.93808 4.12457 4.19658 4.38991 4.48784 4.51590 4.66186 4.85690 4.91687 4.93950 4.95715 5.07705 5.26607 5.37356 5.46319 5.63487 5.66435 5.86933 6.00032 6.33308 6.54666 6.65982 6.76999 6.79842 6.85482 7.40441 7.52709 7.64404 7.84865 8.12617 8.23668 8.77460 9.31307 10.51077 Molecular weight = 333.10amu Principal moments of inertia in cm(-1) A = 0.010067 B = 0.004159 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2780.741546 B = 6731.406704 C = 9385.573314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.297 6.297 3 C 0.276 3.724 4 C -0.140 4.140 5 C -0.030 4.030 6 C -0.002 4.002 7 C 0.575 3.425 8 O -0.523 6.523 9 N -0.627 5.627 10 C 0.050 3.950 11 C -0.046 4.046 12 C -0.225 4.225 13 C 0.135 3.865 14 F -0.148 7.148 15 C -0.247 4.247 16 C 0.170 3.830 17 O -0.202 6.202 18 C -0.393 4.393 19 H 0.110 0.890 20 C 0.069 3.931 21 N -0.869 5.869 22 Si 0.901 3.099 23 H -0.273 1.273 24 H -0.280 1.280 25 H -0.253 1.253 26 N -0.165 5.165 27 N -0.296 5.296 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.103 0.897 31 H 0.164 0.836 32 H 0.172 0.828 33 H 0.422 0.578 34 H 0.144 0.856 35 H 0.126 0.874 36 H 0.151 0.849 37 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.150 -17.527 -7.199 19.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.200 6.200 3 C 0.092 3.908 4 C -0.170 4.170 5 C -0.058 4.058 6 C -0.151 4.151 7 C 0.360 3.640 8 O -0.398 6.398 9 N -0.271 5.271 10 C -0.044 4.044 11 C -0.066 4.066 12 C -0.245 4.245 13 C 0.116 3.884 14 F -0.126 7.126 15 C -0.268 4.268 16 C 0.115 3.885 17 O -0.106 6.106 18 C -0.468 4.468 19 H 0.127 0.873 20 C -0.136 4.136 21 N -0.505 5.505 22 Si 0.726 3.274 23 H -0.198 1.198 24 H -0.206 1.206 25 H -0.176 1.176 26 N -0.013 5.013 27 N -0.154 5.154 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.121 0.879 31 H 0.182 0.818 32 H 0.190 0.810 33 H 0.260 0.740 34 H 0.161 0.839 35 H 0.144 0.856 36 H 0.168 0.832 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.224 -17.179 -7.024 19.280 hybrid contribution 0.187 -0.894 0.253 0.948 sum 5.410 -18.073 -6.771 20.043 Atomic orbital electron populations 1.23096 0.76038 1.03811 1.03412 1.86209 1.23849 1.23165 1.86812 1.21703 0.91098 0.87242 0.90773 1.21526 0.92155 0.99891 1.03389 1.22295 1.03042 0.89910 0.90535 1.22657 0.92039 0.96039 1.04389 1.17384 0.86181 0.82797 0.77681 1.90776 1.13507 1.85401 1.50148 1.42932 1.11504 1.03427 1.69240 1.16860 0.97724 0.83524 1.06318 1.20640 0.93429 0.95891 0.96683 1.20529 1.02782 0.92909 1.08276 1.17486 0.92779 0.79429 0.98744 1.91433 1.86311 1.40181 1.94697 1.20982 0.97574 0.98634 1.09573 1.18521 0.87426 0.91604 0.90943 1.83549 1.27438 1.37064 1.62574 1.20784 0.99401 0.89770 1.36815 0.87254 1.24472 0.94943 0.99144 0.95065 1.69640 1.13906 1.30858 1.36107 0.86242 0.78242 0.82646 0.80268 1.19822 1.20581 1.17641 1.73086 1.10069 1.14051 1.04123 1.73240 1.31182 0.93948 1.17033 0.91480 0.91518 0.87865 0.81799 0.81048 0.73995 0.83873 0.85582 0.83202 0.90740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.39 101.05 1.05 1.28 16 2 O -0.30 -2.85 10.48 -18.26 -0.19 -3.04 16 3 C 0.28 3.08 7.57 -16.78 -0.13 2.95 16 4 C -0.14 -1.25 10.14 -39.11 -0.40 -1.65 16 5 C -0.03 -0.30 9.72 -38.86 -0.38 -0.68 16 6 C 0.00 -0.03 6.83 -82.85 -0.57 -0.60 16 7 C 0.58 9.29 7.65 -12.31 -0.09 9.20 16 8 O -0.52 -8.91 13.80 5.31 0.07 -8.84 16 9 N -0.63 -11.17 5.17 -10.56 -0.05 -11.22 16 10 C 0.05 0.97 6.33 -83.48 -0.53 0.44 16 11 C -0.05 -0.82 8.69 -39.42 -0.34 -1.16 16 12 C -0.22 -3.88 10.02 -39.49 -0.40 -4.27 16 13 C 0.14 2.60 7.29 -39.42 -0.29 2.31 16 14 F -0.15 -2.75 17.26 2.25 0.04 -2.72 16 15 C -0.25 -5.26 9.14 -39.36 -0.36 -5.62 16 16 C 0.17 3.74 6.67 -38.93 -0.26 3.48 16 17 O -0.20 -4.96 8.15 0.06 0.00 -4.96 16 18 C -0.39 -10.51 9.94 30.88 0.31 -10.20 16 19 H 0.11 3.01 5.44 -52.48 -0.29 2.72 16 20 C 0.07 1.85 5.49 -17.52 -0.10 1.75 16 21 N -0.87 -24.20 13.96 55.48 0.77 -23.43 16 22 Si 0.90 20.79 28.62 -169.99 -4.86 15.92 16 23 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 24 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 25 H -0.25 -5.70 7.11 56.52 0.40 -5.30 16 26 N -0.16 -2.50 10.74 33.31 0.36 -2.15 16 27 N -0.30 -4.08 10.40 30.54 0.32 -3.76 16 28 H 0.07 0.53 8.11 -51.93 -0.42 0.11 16 29 H 0.07 0.50 8.11 -51.93 -0.42 0.08 16 30 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.16 0.89 8.06 -52.48 -0.42 0.47 16 32 H 0.17 1.40 7.71 -52.49 -0.40 1.00 16 33 H 0.42 7.52 7.93 -40.82 -0.32 7.19 16 34 H 0.14 2.35 6.19 -52.49 -0.32 2.03 16 35 H 0.13 1.84 8.06 -52.48 -0.42 1.42 16 36 H 0.15 3.35 5.64 -52.49 -0.30 3.05 16 37 H 0.28 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 337.47 15.07 5.09 5.09 Total: -1.00 -30.09 337.47 -3.82 -33.91 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -2.88 Total: 7.98 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: -2.47 Total: -2.77 kcal Atomic # 7 Polarization: -41.96 SS G_CDS: 1.40 Total: -40.56 kcal Atomic # 8 Polarization: -16.72 SS G_CDS: -0.12 Total: -16.84 kcal Atomic # 9 Polarization: -2.75 SS G_CDS: 0.04 Total: -2.72 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -4.86 Total: 15.92 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.09 -3.82 -33.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120018146.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.741 kcal (2) G-P(sol) polarization free energy of solvation -30.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds