Wall clock time and date at job start Tue Mar 31 2020 17:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35524 * 116.99985 * 2 1 4 4 C 1.39348 * 120.02793 * 179.97438 * 3 2 1 5 5 C 1.38411 * 118.04235 * 180.02562 * 4 3 2 6 6 C 1.39996 * 117.96506 * 0.02562 * 5 4 3 7 7 C 1.47895 * 120.11908 * 180.02562 * 6 5 4 8 8 O 1.21566 * 120.00076 * 359.97438 * 7 6 5 9 9 N 1.34778 * 120.00029 * 179.97438 * 7 6 5 10 10 C 1.39987 * 119.99963 * 175.62309 * 9 7 6 11 11 C 1.38740 * 120.08007 * 34.60787 * 10 9 7 12 12 C 1.38174 * 120.01653 * 179.76959 * 11 10 9 13 13 C 1.38554 * 120.18456 * 0.50733 * 12 11 10 14 14 F 1.35096 * 119.92509 * 179.76799 * 13 12 11 15 15 C 1.38348 * 120.15676 * 359.74474 * 13 12 11 16 16 C 1.38736 * 119.97857 * 0.02562 * 15 13 12 17 17 O 1.35773 * 120.08976 * 179.97438 * 16 15 13 18 18 C 1.34801 * 117.00134 * 5.42649 * 17 16 15 19 19 H 1.08007 * 119.99883 * 354.95215 * 18 17 16 20 20 C 1.38635 * 120.00409 * 174.95740 * 18 17 16 21 21 N 1.31567 * 120.00492 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 119.99625 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.47291 * 90.00170 * 22 20 18 24 24 H 1.48500 * 109.47277 * 210.00285 * 22 20 18 25 25 H 1.48505 * 109.47394 * 330.00144 * 22 20 18 26 26 N 1.32766 * 119.76141 * 359.97438 * 6 5 4 27 27 N 1.28354 * 122.08450 * 0.02562 * 26 6 5 28 28 H 1.09005 * 109.46986 * 299.99893 * 1 2 3 29 29 H 1.08999 * 109.47466 * 59.99990 * 1 2 3 30 30 H 1.09000 * 109.46871 * 180.02562 * 1 2 3 31 31 H 1.08010 * 120.98007 * 0.04523 * 4 3 2 32 32 H 1.07994 * 121.01612 * 180.02562 * 5 4 3 33 33 H 0.96999 * 119.99515 * 355.62183 * 9 7 6 34 34 H 1.07998 * 119.98793 * 0.02562 * 11 10 9 35 35 H 1.08006 * 119.90941 * 180.23600 * 12 11 10 36 36 H 1.07998 * 120.00976 * 180.02562 * 15 13 12 37 37 H 0.96997 * 120.00347 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2075 0.0000 4 6 3.4358 1.2811 0.0005 5 6 4.0211 2.5354 0.0011 6 6 3.1782 3.6532 0.0016 7 6 3.7527 5.0160 0.0016 8 8 4.9589 5.1671 0.0016 9 7 2.9390 6.0904 0.0015 10 6 3.4800 7.3781 0.0941 11 6 4.6996 7.6645 -0.5021 12 6 5.2301 8.9373 -0.4140 13 6 4.5524 9.9282 0.2778 14 9 5.0782 11.1696 0.3646 15 6 3.3382 9.6494 0.8795 16 6 2.7971 8.3750 0.7912 17 8 1.6060 8.0988 1.3814 18 6 0.9461 9.1324 1.9411 19 1 1.4053 10.1093 1.9793 20 6 -0.3221 8.9417 2.4678 21 7 -0.9664 9.9506 3.0137 22 14 -1.1166 7.2524 2.4013 23 1 -0.7637 6.4908 3.6263 24 1 -2.5917 7.4020 2.3191 25 1 -0.6259 6.5212 1.2054 26 7 1.8611 3.4854 0.0010 27 7 1.3222 2.3205 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 4.0399 0.3858 0.0002 32 1 5.0951 2.6483 0.0011 33 1 1.9785 5.9712 -0.0626 34 1 5.2324 6.8934 -1.0387 35 1 6.1779 9.1593 -0.8820 36 1 2.8118 10.4237 1.4178 37 1 -1.8538 9.8172 3.3819 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120018146.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:42:33 Heat of formation + Delta-G solvation = -65.681342 kcal Electronic energy + Delta-G solvation = -27409.008638 eV Core-core repulsion = 23067.724826 eV Total energy + Delta-G solvation = -4341.283812 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.096 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.87009 -42.60097 -41.64559 -40.40710 -39.46345 -38.15531 -35.83980 -34.51346 -34.41166 -33.20012 -31.27214 -30.16933 -28.63061 -27.40598 -26.57084 -25.16048 -24.14984 -23.31582 -22.13652 -20.20119 -20.00560 -19.75287 -19.25359 -18.89441 -18.02000 -17.53817 -17.27386 -16.97776 -16.70990 -16.40921 -16.08477 -15.88878 -15.68333 -15.63190 -15.38948 -15.26831 -15.08833 -14.98239 -14.56351 -14.27880 -13.89657 -13.64022 -13.27030 -13.14583 -12.93169 -12.69254 -12.63380 -12.42686 -12.18084 -11.68198 -11.49711 -11.41917 -11.11932 -10.96565 -10.93044 -10.38954 -9.65911 -8.92454 -8.55090 -6.28558 -0.73178 -0.40465 0.12802 0.38163 1.31657 1.34047 1.40483 1.51098 1.65663 1.83704 2.23511 2.38912 2.57285 2.66741 2.79205 2.96633 3.06990 3.34488 3.50706 3.71090 3.79668 3.88278 4.13670 4.21934 4.25734 4.34896 4.38335 4.48371 4.67465 4.71499 4.81458 4.89265 5.09463 5.14782 5.24234 5.35536 5.56388 5.78028 5.79690 6.01485 6.21887 6.76970 6.79794 7.27009 7.41256 8.55540 Molecular weight = 333.10amu Principal moments of inertia in cm(-1) A = 0.010067 B = 0.004159 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2780.741546 B = 6731.406704 C = 9385.573314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.294 6.294 3 C 0.271 3.729 4 C -0.118 4.118 5 C -0.023 4.023 6 C -0.018 4.018 7 C 0.582 3.418 8 O -0.530 6.530 9 N -0.638 5.638 10 C 0.060 3.940 11 C -0.043 4.043 12 C -0.191 4.191 13 C 0.126 3.874 14 F -0.144 7.144 15 C -0.257 4.257 16 C 0.143 3.857 17 O -0.222 6.222 18 C -0.401 4.401 19 H 0.085 0.915 20 C 0.021 3.979 21 N -0.914 5.914 22 Si 0.959 3.041 23 H -0.272 1.272 24 H -0.268 1.268 25 H -0.249 1.249 26 N -0.197 5.197 27 N -0.321 5.321 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.136 0.864 31 H 0.207 0.793 32 H 0.197 0.803 33 H 0.421 0.579 34 H 0.166 0.834 35 H 0.167 0.833 36 H 0.128 0.872 37 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.440 -20.887 -8.644 24.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.197 6.197 3 C 0.087 3.913 4 C -0.147 4.147 5 C -0.051 4.051 6 C -0.167 4.167 7 C 0.368 3.632 8 O -0.406 6.406 9 N -0.281 5.281 10 C -0.034 4.034 11 C -0.063 4.063 12 C -0.211 4.211 13 C 0.106 3.894 14 F -0.123 7.123 15 C -0.278 4.278 16 C 0.091 3.909 17 O -0.128 6.128 18 C -0.477 4.477 19 H 0.103 0.897 20 C -0.179 4.179 21 N -0.554 5.554 22 Si 0.781 3.219 23 H -0.198 1.198 24 H -0.193 1.193 25 H -0.173 1.173 26 N -0.045 5.045 27 N -0.180 5.180 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.154 0.846 31 H 0.224 0.776 32 H 0.214 0.786 33 H 0.258 0.742 34 H 0.183 0.817 35 H 0.184 0.816 36 H 0.146 0.854 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 7.550 -20.558 -8.495 23.490 hybrid contribution -0.251 0.046 0.551 0.607 sum 7.299 -20.512 -7.943 23.176 Atomic orbital electron populations 1.23314 0.74970 1.05792 1.02783 1.86236 1.24908 1.22173 1.86370 1.22042 0.92220 0.87073 0.89979 1.21973 0.91354 1.00807 1.00594 1.22558 1.03794 0.89138 0.89576 1.22467 0.92450 0.95594 1.06228 1.17666 0.85925 0.83230 0.76415 1.90748 1.13706 1.85788 1.50349 1.43047 1.11734 1.03301 1.70040 1.17096 0.97728 0.83846 1.04745 1.20953 0.92603 0.96604 0.96165 1.20977 1.03203 0.91645 1.05285 1.17534 0.92346 0.80207 0.99285 1.91442 1.86052 1.40054 1.94714 1.20980 0.98649 0.98223 1.09965 1.18901 0.87197 0.92775 0.92045 1.83512 1.28712 1.35988 1.64599 1.20682 0.99904 0.89660 1.37426 0.89714 1.25178 0.95377 1.02428 0.94918 1.69716 1.14686 1.32697 1.38281 0.85382 0.77857 0.78523 0.80155 1.19769 1.19305 1.17265 1.72996 1.10921 1.15116 1.05426 1.73129 1.32073 0.94378 1.18409 0.92358 0.91933 0.84602 0.77559 0.78586 0.74204 0.81671 0.81577 0.85394 0.90373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.39 113.37 1.18 1.51 16 2 O -0.29 -4.84 10.48 -88.27 -0.93 -5.77 16 3 C 0.27 5.39 7.57 84.83 0.64 6.03 16 4 C -0.12 -1.65 10.14 22.58 0.23 -1.42 16 5 C -0.02 -0.40 9.72 22.74 0.22 -0.18 16 6 C -0.02 -0.47 6.83 41.99 0.29 -0.18 16 7 C 0.58 17.85 7.65 86.80 0.66 18.51 16 8 O -0.53 -16.62 13.80 -3.92 -0.05 -16.67 16 9 N -0.64 -22.32 5.17 -305.58 -1.58 -23.91 16 10 C 0.06 2.30 6.33 38.26 0.24 2.54 16 11 C -0.04 -1.41 8.69 22.37 0.19 -1.22 16 12 C -0.19 -5.98 10.02 22.33 0.22 -5.75 16 13 C 0.13 4.70 7.29 22.37 0.16 4.87 16 14 F -0.14 -5.21 17.26 44.97 0.78 -4.44 16 15 C -0.26 -11.31 9.14 22.42 0.20 -11.11 16 16 C 0.14 6.45 6.67 22.69 0.15 6.60 16 17 O -0.22 -11.34 8.15 -22.70 -0.18 -11.52 16 18 C -0.40 -22.69 9.94 67.91 0.68 -22.02 16 19 H 0.09 5.06 5.44 -2.91 -0.02 5.04 16 20 C 0.02 1.18 5.49 84.83 0.47 1.65 16 21 N -0.91 -53.37 13.96 21.61 0.30 -53.07 16 22 Si 0.96 44.18 28.62 68.60 1.96 46.15 16 23 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 24 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 25 H -0.25 -11.17 7.11 99.48 0.71 -10.46 16 26 N -0.20 -5.83 10.74 -48.52 -0.52 -6.36 16 27 N -0.32 -8.53 10.40 -170.02 -1.77 -10.30 16 28 H 0.06 0.86 8.11 -2.38 -0.02 0.85 16 29 H 0.06 0.87 8.11 -2.39 -0.02 0.85 16 30 H 0.14 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.21 1.07 8.06 -2.91 -0.02 1.05 16 32 H 0.20 2.35 7.71 -2.91 -0.02 2.33 16 33 H 0.42 15.13 7.93 -92.71 -0.73 14.40 16 34 H 0.17 4.77 6.19 -2.91 -0.02 4.75 16 35 H 0.17 3.95 8.06 -2.91 -0.02 3.93 16 36 H 0.13 6.16 5.64 -2.91 -0.02 6.14 16 37 H 0.29 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -68.39 337.47 3.99 -64.41 By element: Atomic # 1 Polarization: 21.20 SS G_CDS: 0.44 Total: 21.64 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: 5.54 Total: -0.16 kcal Atomic # 7 Polarization: -90.06 SS G_CDS: -3.57 Total: -93.63 kcal Atomic # 8 Polarization: -32.79 SS G_CDS: -1.16 Total: -33.96 kcal Atomic # 9 Polarization: -5.21 SS G_CDS: 0.78 Total: -4.44 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 1.96 Total: 46.15 kcal Total: -68.39 3.99 -64.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120018146.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.275 kcal (2) G-P(sol) polarization free energy of solvation -68.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds