Wall clock time and date at job start Tue Mar 31 2020 17:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 109.46755 * 2 1 4 4 C 1.36561 * 119.72670 * 90.00545 * 3 2 1 5 5 S 1.76201 * 118.47271 * 359.97438 * 4 3 2 6 6 N 1.31022 * 123.05578 * 179.97438 * 4 3 2 7 7 C 1.35401 * 121.55341 * 0.02562 * 6 4 3 8 8 C 1.39721 * 121.47216 * 180.02562 * 7 6 4 9 9 C 1.38976 * 119.43462 * 179.97438 * 8 7 6 10 10 C 1.47896 * 119.76030 * 180.02562 * 9 8 7 11 11 O 1.21575 * 120.00136 * 143.07753 * 10 9 8 12 12 N 1.34779 * 119.99846 * 323.07291 * 10 9 8 13 13 C 1.46499 * 119.99855 * 185.23416 * 12 10 9 14 14 C 1.36767 * 119.99929 * 5.23597 * 12 10 9 15 15 H 1.07998 * 119.99837 * 318.64922 * 14 12 10 16 16 C 1.39120 * 120.00038 * 138.65688 * 14 12 10 17 17 N 1.31315 * 120.00101 * 161.19120 * 16 14 12 18 18 Si 1.86802 * 119.99930 * 341.18444 * 16 14 12 19 19 H 1.48503 * 109.47020 * 93.16134 * 18 16 14 20 20 H 1.48500 * 109.47062 * 213.16143 * 18 16 14 21 21 H 1.48497 * 109.46981 * 333.16516 * 18 16 14 22 22 C 1.40146 * 120.47863 * 0.04144 * 9 8 7 23 23 C 1.36490 * 120.59220 * 359.95597 * 22 9 8 24 24 C 1.39484 * 119.89551 * 0.02562 * 23 22 9 25 25 C 1.35288 * 119.73137 * 269.72910 * 3 2 1 26 26 O 1.21715 * 121.20889 * 359.97438 * 25 3 2 27 27 H 1.09005 * 109.46899 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47020 * 299.99796 * 1 2 3 29 29 H 1.08993 * 109.47222 * 59.99842 * 1 2 3 30 30 H 1.09000 * 109.47374 * 240.00810 * 2 1 3 31 31 H 1.08995 * 109.47694 * 119.99933 * 2 1 3 32 32 H 1.41008 * 99.99634 * 180.02562 * 5 4 3 33 33 H 1.07999 * 120.27613 * 359.97438 * 8 7 6 34 34 H 1.09005 * 109.47287 * 84.70297 * 13 12 10 35 35 H 1.09002 * 109.47027 * 204.70548 * 13 12 10 36 36 H 1.08997 * 109.47241 * 324.70487 * 13 12 10 37 37 H 0.97004 * 119.99670 * 180.02562 * 17 16 14 38 38 H 1.07994 * 119.70309 * 179.97438 * 22 9 8 39 39 H 1.08011 * 120.05177 * 179.97438 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2440 2.0197 1.1859 5 16 1.9341 1.1444 2.6834 6 7 2.6804 3.2528 1.2620 7 6 2.9384 3.9829 0.1513 8 6 3.4042 5.2975 0.2344 9 6 3.6558 6.0080 -0.9332 10 6 4.1496 7.3999 -0.8536 11 8 4.9635 7.8033 -1.6617 12 7 3.6972 8.2210 0.1146 13 6 4.0973 9.6303 0.1259 14 6 2.8647 7.7387 1.0866 15 1 2.0717 7.0531 0.8269 16 6 3.0394 8.1312 2.4098 17 7 2.0602 7.9856 3.2726 18 14 4.6669 8.8653 2.9592 19 1 4.6011 10.3455 2.8592 20 1 4.9356 8.4757 4.3667 21 1 5.7576 8.3584 2.0883 22 6 3.4447 5.4153 -2.1855 23 6 2.9900 4.1318 -2.2787 24 6 2.7312 3.4000 -1.1198 25 6 2.2471 2.0120 -1.1748 26 8 2.0552 1.4528 -2.2387 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 2.2841 2.1357 3.6232 33 1 3.5674 5.7575 1.1978 34 1 3.4373 10.2007 -0.5277 35 1 4.0279 10.0196 1.1417 36 1 5.1244 9.7193 -0.2279 37 1 2.1819 8.2597 4.1951 38 1 3.6439 5.9791 -3.0848 39 1 2.8299 3.6837 -3.2484 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000748526253.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:06 Heat of formation + Delta-G solvation = 6.649281 kcal Electronic energy + Delta-G solvation = -26324.506030 eV Core-core repulsion = 22552.571885 eV Total energy + Delta-G solvation = -3771.934145 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 333.093 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.44924 -39.42508 -37.85383 -37.25583 -35.14830 -34.70919 -32.12723 -31.55678 -30.62594 -29.86661 -26.93979 -25.56027 -24.90296 -24.51158 -22.73686 -21.81241 -20.21523 -18.93189 -18.70635 -17.94486 -17.26179 -16.47986 -16.07296 -15.92171 -15.43018 -15.32508 -14.64872 -14.61993 -14.44462 -14.17232 -13.70381 -13.40246 -13.35179 -13.30160 -13.02769 -12.77895 -12.51001 -12.33425 -12.12652 -11.78556 -11.66500 -11.63781 -11.38025 -11.26061 -10.96881 -10.46532 -10.17417 -10.14462 -9.93360 -9.85603 -9.42997 -9.10817 -8.86644 -8.60010 -7.94668 -7.56733 -6.64339 -4.27374 0.53396 0.78118 0.99394 2.01123 2.33322 2.49811 2.70245 2.95734 3.12056 3.19796 3.65343 3.97495 4.12916 4.21123 4.31748 4.44590 4.73662 4.81629 4.87455 5.03504 5.10970 5.33031 5.39246 5.58896 5.60437 5.69954 5.74824 5.94975 5.99947 6.08547 6.19178 6.25543 6.37339 6.41937 6.52350 6.69441 6.86409 7.06676 7.17532 7.70600 7.78202 7.87114 8.06584 8.72673 9.10371 9.44333 10.43514 Molecular weight = 333.09amu Principal moments of inertia in cm(-1) A = 0.014372 B = 0.004319 C = 0.003493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.702745 B = 6482.147681 C = 8013.199064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.088 3.912 3 N -0.528 5.528 4 C 0.378 3.622 5 S -0.044 6.044 6 N -0.507 5.507 7 C 0.139 3.861 8 C -0.045 4.045 9 C -0.053 4.053 10 C 0.512 3.488 11 O -0.588 6.588 12 N -0.453 5.453 13 C 0.072 3.928 14 C -0.357 4.357 15 H 0.111 0.889 16 C 0.070 3.930 17 N -0.847 5.847 18 Si 0.877 3.123 19 H -0.271 1.271 20 H -0.285 1.285 21 H -0.259 1.259 22 C -0.092 4.092 23 C -0.061 4.061 24 C -0.188 4.188 25 C 0.558 3.442 26 O -0.515 6.515 27 H 0.077 0.923 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.101 0.899 31 H 0.098 0.902 32 H 0.145 0.855 33 H 0.176 0.824 34 H 0.052 0.948 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.278 0.722 38 H 0.136 0.864 39 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.966 -13.911 -0.293 14.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.034 4.034 3 N -0.254 5.254 4 C 0.001 3.999 5 S 0.112 5.888 6 N -0.231 5.231 7 C 0.027 3.973 8 C -0.065 4.065 9 C -0.058 4.058 10 C 0.302 3.698 11 O -0.474 6.474 12 N -0.172 5.172 13 C -0.071 4.071 14 C -0.484 4.484 15 H 0.128 0.872 16 C -0.139 4.139 17 N -0.481 5.481 18 Si 0.704 3.296 19 H -0.198 1.198 20 H -0.212 1.212 21 H -0.183 1.183 22 C -0.112 4.112 23 C -0.080 4.080 24 C -0.195 4.195 25 C 0.351 3.649 26 O -0.390 6.390 27 H 0.096 0.904 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.119 0.881 31 H 0.116 0.884 32 H 0.109 0.891 33 H 0.193 0.807 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.154 0.846 39 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -1.838 -14.147 0.208 14.267 hybrid contribution 0.836 1.406 -0.313 1.665 sum -1.002 -12.741 -0.105 12.781 Atomic orbital electron populations 1.22135 0.93862 1.03281 1.03409 1.21980 0.96305 0.80102 1.05011 1.46339 1.58255 1.15557 1.05272 1.23878 0.94795 0.91765 0.89482 1.86802 1.83496 1.21257 0.97225 1.69179 1.20686 1.02711 1.30509 1.18649 0.97914 0.94155 0.86553 1.21972 0.93520 0.89707 1.01311 1.20074 0.97668 0.94916 0.93110 1.18198 0.82772 0.84759 0.84119 1.90655 1.35525 1.76755 1.44467 1.43488 1.42483 1.06620 1.24645 1.21863 1.00235 0.83499 1.01464 1.19193 1.11754 1.31385 0.86055 0.87213 1.25384 0.97094 0.95762 0.95671 1.69696 1.30353 1.43018 1.05019 0.86921 0.84826 0.79381 0.78482 1.19770 1.21157 1.18262 1.20939 0.98283 0.94518 0.97418 1.20499 0.96869 0.93478 0.97198 1.20537 1.09438 0.93919 0.95639 1.18411 0.77378 0.86546 0.82575 1.90820 1.52275 1.68107 1.27803 0.90413 0.91272 0.91873 0.88091 0.88355 0.89106 0.80704 0.92923 0.91692 0.91805 0.91132 0.84625 0.84573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.48 10.24 37.16 0.38 -1.10 16 2 C 0.09 0.87 5.60 -4.04 -0.02 0.84 16 3 N -0.53 -7.29 2.62 -117.36 -0.31 -7.59 16 4 C 0.38 5.40 7.82 -88.54 -0.69 4.70 16 5 S -0.04 -0.44 23.71 -107.50 -2.55 -2.99 16 6 N -0.51 -8.94 10.27 -10.80 -0.11 -9.05 16 7 C 0.14 2.66 6.63 -84.55 -0.56 2.10 16 8 C -0.04 -0.94 7.72 -38.75 -0.30 -1.24 16 9 C -0.05 -1.12 5.44 -104.95 -0.57 -1.69 16 10 C 0.51 11.97 7.34 -12.31 -0.09 11.88 16 11 O -0.59 -14.64 16.48 5.30 0.09 -14.55 16 12 N -0.45 -10.71 2.51 -123.27 -0.31 -11.02 16 13 C 0.07 1.53 8.99 59.85 0.54 2.06 16 14 C -0.36 -8.86 6.64 -15.02 -0.10 -8.96 16 15 H 0.11 2.91 6.54 -52.49 -0.34 2.56 16 16 C 0.07 1.75 5.30 -17.45 -0.09 1.66 16 17 N -0.85 -22.08 13.95 55.50 0.77 -21.31 16 18 Si 0.88 19.45 25.07 -169.99 -4.26 15.19 16 19 H -0.27 -5.75 6.65 56.52 0.38 -5.37 16 20 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 21 H -0.26 -5.90 7.11 56.52 0.40 -5.50 16 22 C -0.09 -1.67 9.53 -39.50 -0.38 -2.05 16 23 C -0.06 -1.03 9.60 -39.75 -0.38 -1.41 16 24 C -0.19 -3.38 5.90 -104.65 -0.62 -4.00 16 25 C 0.56 9.25 7.66 -12.43 -0.10 9.15 16 26 O -0.51 -9.06 16.27 5.18 0.08 -8.98 16 27 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.61 8.06 -51.93 -0.42 0.19 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.10 0.99 7.45 -51.93 -0.39 0.61 16 31 H 0.10 0.75 6.47 -51.93 -0.34 0.41 16 32 H 0.14 1.48 9.50 96.90 0.92 2.40 16 33 H 0.18 3.99 5.77 -52.49 -0.30 3.69 16 34 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.06 1.37 3.74 -51.93 -0.19 1.17 16 36 H 0.06 1.31 7.52 -51.93 -0.39 0.92 16 37 H 0.28 6.77 8.31 -40.82 -0.34 6.43 16 38 H 0.14 2.28 8.01 -52.49 -0.42 1.86 16 39 H 0.14 2.04 7.80 -52.48 -0.41 1.63 16 LS Contribution 339.74 15.07 5.12 5.12 Total: -1.00 -30.03 339.74 -7.16 -37.19 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -2.71 Total: 6.02 kcal Atomic # 6 Polarization: 14.95 SS G_CDS: -2.98 Total: 11.97 kcal Atomic # 7 Polarization: -49.02 SS G_CDS: 0.05 Total: -48.98 kcal Atomic # 8 Polarization: -23.70 SS G_CDS: 0.17 Total: -23.53 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -4.26 Total: 15.19 kcal Atomic # 16 Polarization: -0.44 SS G_CDS: -2.55 Total: -2.99 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.03 -7.16 -37.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748526253.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.843 kcal (2) G-P(sol) polarization free energy of solvation -30.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds