Wall clock time and date at job start Tue Mar 31 2020 17:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 109.46755 * 2 1 4 4 C 1.36561 * 119.72670 * 90.00545 * 3 2 1 5 5 S 1.76201 * 118.47271 * 359.97438 * 4 3 2 6 6 N 1.31022 * 123.05578 * 179.97438 * 4 3 2 7 7 C 1.35401 * 121.55341 * 0.02562 * 6 4 3 8 8 C 1.39721 * 121.47216 * 180.02562 * 7 6 4 9 9 C 1.38976 * 119.43462 * 179.97438 * 8 7 6 10 10 C 1.47896 * 119.76030 * 180.02562 * 9 8 7 11 11 O 1.21575 * 120.00136 * 143.07753 * 10 9 8 12 12 N 1.34779 * 119.99846 * 323.07291 * 10 9 8 13 13 C 1.46499 * 119.99855 * 185.23416 * 12 10 9 14 14 C 1.36767 * 119.99929 * 5.23597 * 12 10 9 15 15 H 1.07998 * 119.99837 * 318.64922 * 14 12 10 16 16 C 1.39120 * 120.00038 * 138.65688 * 14 12 10 17 17 N 1.31315 * 120.00101 * 161.19120 * 16 14 12 18 18 Si 1.86802 * 119.99930 * 341.18444 * 16 14 12 19 19 H 1.48503 * 109.47020 * 93.16134 * 18 16 14 20 20 H 1.48500 * 109.47062 * 213.16143 * 18 16 14 21 21 H 1.48497 * 109.46981 * 333.16516 * 18 16 14 22 22 C 1.40146 * 120.47863 * 0.04144 * 9 8 7 23 23 C 1.36490 * 120.59220 * 359.95597 * 22 9 8 24 24 C 1.39484 * 119.89551 * 0.02562 * 23 22 9 25 25 C 1.35288 * 119.73137 * 269.72910 * 3 2 1 26 26 O 1.21715 * 121.20889 * 359.97438 * 25 3 2 27 27 H 1.09005 * 109.46899 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47020 * 299.99796 * 1 2 3 29 29 H 1.08993 * 109.47222 * 59.99842 * 1 2 3 30 30 H 1.09000 * 109.47374 * 240.00810 * 2 1 3 31 31 H 1.08995 * 109.47694 * 119.99933 * 2 1 3 32 32 H 1.41008 * 99.99634 * 180.02562 * 5 4 3 33 33 H 1.07999 * 120.27613 * 359.97438 * 8 7 6 34 34 H 1.09005 * 109.47287 * 84.70297 * 13 12 10 35 35 H 1.09002 * 109.47027 * 204.70548 * 13 12 10 36 36 H 1.08997 * 109.47241 * 324.70487 * 13 12 10 37 37 H 0.97004 * 119.99670 * 180.02562 * 17 16 14 38 38 H 1.07994 * 119.70309 * 179.97438 * 22 9 8 39 39 H 1.08011 * 120.05177 * 179.97438 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2440 2.0197 1.1859 5 16 1.9341 1.1444 2.6834 6 7 2.6804 3.2528 1.2620 7 6 2.9384 3.9829 0.1513 8 6 3.4042 5.2975 0.2344 9 6 3.6558 6.0080 -0.9332 10 6 4.1496 7.3999 -0.8536 11 8 4.9635 7.8033 -1.6617 12 7 3.6972 8.2210 0.1146 13 6 4.0973 9.6303 0.1259 14 6 2.8647 7.7387 1.0866 15 1 2.0717 7.0531 0.8269 16 6 3.0394 8.1312 2.4098 17 7 2.0602 7.9856 3.2726 18 14 4.6669 8.8653 2.9592 19 1 4.6011 10.3455 2.8592 20 1 4.9356 8.4757 4.3667 21 1 5.7576 8.3584 2.0883 22 6 3.4447 5.4153 -2.1855 23 6 2.9900 4.1318 -2.2787 24 6 2.7312 3.4000 -1.1198 25 6 2.2471 2.0120 -1.1748 26 8 2.0552 1.4528 -2.2387 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 2.2841 2.1357 3.6232 33 1 3.5674 5.7575 1.1978 34 1 3.4373 10.2007 -0.5277 35 1 4.0279 10.0196 1.1417 36 1 5.1244 9.7193 -0.2279 37 1 2.1819 8.2597 4.1951 38 1 3.6439 5.9791 -3.0848 39 1 2.8299 3.6837 -3.2484 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000748526253.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:05 Heat of formation + Delta-G solvation = -11.856689 kcal Electronic energy + Delta-G solvation = -26325.308509 eV Core-core repulsion = 22552.571885 eV Total energy + Delta-G solvation = -3772.736624 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 333.093 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.72421 -41.10853 -39.31023 -38.57590 -36.99400 -35.93782 -34.04310 -32.90960 -31.76133 -31.19606 -28.59144 -27.30150 -26.24192 -25.86349 -23.83478 -23.21703 -21.74815 -20.49592 -20.01532 -19.30780 -18.73523 -17.99922 -17.35888 -17.28269 -17.08122 -16.62819 -16.35844 -16.18786 -15.58255 -15.38219 -15.00037 -14.90373 -14.73666 -14.63599 -14.59802 -14.37343 -14.05870 -13.65539 -13.43249 -13.20442 -13.03560 -12.88402 -12.78203 -12.51393 -12.25015 -12.12454 -11.95158 -11.47121 -11.29399 -11.19265 -11.11181 -10.69017 -10.24629 -9.99817 -9.80530 -8.81826 -8.55688 -6.22180 -0.81788 -0.42428 -0.25054 0.95391 1.07327 1.14561 1.25680 1.35854 1.41337 1.44730 1.98766 2.13147 2.45473 2.74537 2.92827 2.97777 3.17131 3.63480 3.81315 3.95639 4.10075 4.11022 4.18732 4.26244 4.33638 4.43211 4.52099 4.64049 4.72155 4.74151 4.91273 4.94729 5.05476 5.06774 5.26849 5.31001 5.35513 5.38872 5.60794 5.96566 6.12683 6.42393 6.49693 6.82141 7.21336 7.57541 8.55411 Molecular weight = 333.09amu Principal moments of inertia in cm(-1) A = 0.014372 B = 0.004319 C = 0.003493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.702745 B = 6482.147681 C = 8013.199064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.080 3.920 3 N -0.525 5.525 4 C 0.379 3.621 5 S 0.032 5.968 6 N -0.549 5.549 7 C 0.142 3.858 8 C -0.062 4.062 9 C -0.072 4.072 10 C 0.510 3.490 11 O -0.607 6.607 12 N -0.465 5.465 13 C 0.068 3.932 14 C -0.350 4.350 15 H 0.084 0.916 16 C 0.039 3.961 17 N -0.883 5.883 18 Si 0.925 3.075 19 H -0.250 1.250 20 H -0.281 1.281 21 H -0.271 1.271 22 C -0.095 4.095 23 C -0.047 4.047 24 C -0.203 4.203 25 C 0.559 3.441 26 O -0.525 6.525 27 H 0.109 0.891 28 H 0.069 0.931 29 H 0.041 0.959 30 H 0.104 0.896 31 H 0.127 0.873 32 H 0.138 0.862 33 H 0.149 0.851 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.283 0.717 38 H 0.149 0.851 39 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.210 -16.040 0.079 16.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.040 4.040 3 N -0.249 5.249 4 C 0.004 3.996 5 S 0.189 5.811 6 N -0.275 5.275 7 C 0.030 3.970 8 C -0.083 4.083 9 C -0.077 4.077 10 C 0.300 3.700 11 O -0.494 6.494 12 N -0.184 5.184 13 C -0.074 4.074 14 C -0.477 4.477 15 H 0.102 0.898 16 C -0.167 4.167 17 N -0.519 5.519 18 Si 0.750 3.250 19 H -0.176 1.176 20 H -0.207 1.207 21 H -0.196 1.196 22 C -0.115 4.115 23 C -0.066 4.066 24 C -0.210 4.210 25 C 0.351 3.649 26 O -0.401 6.401 27 H 0.128 0.872 28 H 0.088 0.912 29 H 0.060 0.940 30 H 0.123 0.877 31 H 0.145 0.855 32 H 0.102 0.898 33 H 0.166 0.834 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.093 0.907 38 H 0.166 0.834 39 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -2.106 -16.309 0.596 16.455 hybrid contribution 0.822 1.789 -0.388 2.006 sum -1.284 -14.520 0.209 14.578 Atomic orbital electron populations 1.22140 0.92768 1.05063 1.02346 1.22385 0.97173 0.77812 1.06615 1.46479 1.57215 1.16842 1.04397 1.24782 0.92091 0.91179 0.91569 1.86578 1.81767 1.18934 0.93820 1.69209 1.23802 1.04427 1.30104 1.18651 0.96888 0.93708 0.87744 1.21624 0.95676 0.90962 1.00053 1.20033 0.99261 0.93973 0.94398 1.18590 0.82268 0.85653 0.83500 1.90618 1.36288 1.77495 1.44965 1.43616 1.42533 1.07685 1.24541 1.21984 1.00955 0.82437 1.02060 1.18915 1.11070 1.31093 0.86668 0.89832 1.25832 0.99207 0.96233 0.95452 1.69747 1.31832 1.44761 1.05527 0.86170 0.81079 0.79924 0.77838 1.17566 1.20729 1.19581 1.21017 0.98672 0.95141 0.96674 1.20726 0.95134 0.92730 0.98010 1.20799 1.09657 0.95142 0.95432 1.18216 0.77316 0.86074 0.83292 1.90810 1.52761 1.68227 1.28349 0.87231 0.91231 0.94000 0.87739 0.85543 0.89751 0.83402 0.91235 0.91498 0.91242 0.90674 0.83371 0.82187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.39 10.24 71.98 0.74 -1.66 16 2 C 0.08 1.33 5.60 86.38 0.48 1.81 16 3 N -0.52 -13.51 2.62 -643.14 -1.69 -15.19 16 4 C 0.38 10.27 7.82 179.62 1.41 11.68 16 5 S 0.03 0.54 23.71 -56.49 -1.34 -0.80 16 6 N -0.55 -19.49 10.27 -188.09 -1.93 -21.42 16 7 C 0.14 5.59 6.63 39.72 0.26 5.85 16 8 C -0.06 -2.74 7.72 22.81 0.18 -2.56 16 9 C -0.07 -3.15 5.44 -20.08 -0.11 -3.26 16 10 C 0.51 24.47 7.34 86.80 0.64 25.11 16 11 O -0.61 -30.59 16.48 -3.95 -0.07 -30.66 16 12 N -0.46 -22.44 2.51 -662.17 -1.66 -24.11 16 13 C 0.07 2.85 8.99 127.77 1.15 4.00 16 14 C -0.35 -18.01 6.64 84.14 0.56 -17.45 16 15 H 0.08 4.69 6.54 -2.91 -0.02 4.67 16 16 C 0.04 1.99 5.30 84.98 0.45 2.44 16 17 N -0.88 -47.05 13.95 21.69 0.30 -46.75 16 18 Si 0.92 40.23 25.07 68.60 1.72 41.95 16 19 H -0.25 -10.00 6.65 99.48 0.66 -9.34 16 20 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 21 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 22 C -0.10 -3.51 9.53 22.32 0.21 -3.29 16 23 C -0.05 -1.57 9.60 22.16 0.21 -1.35 16 24 C -0.20 -7.26 5.90 -19.88 -0.12 -7.38 16 25 C 0.56 17.88 7.66 86.49 0.66 18.54 16 26 O -0.53 -17.68 16.27 -4.40 -0.07 -17.75 16 27 H 0.11 0.92 8.14 -2.38 -0.02 0.90 16 28 H 0.07 1.01 8.06 -2.39 -0.02 0.99 16 29 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.10 1.75 7.45 -2.39 -0.02 1.73 16 31 H 0.13 1.38 6.47 -2.39 -0.02 1.36 16 32 H 0.14 2.53 9.50 73.80 0.70 3.24 16 33 H 0.15 7.23 5.77 -2.91 -0.02 7.21 16 34 H 0.07 2.66 8.14 -2.38 -0.02 2.64 16 35 H 0.07 2.76 3.74 -2.39 -0.01 2.76 16 36 H 0.07 2.82 7.52 -2.39 -0.02 2.80 16 37 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 38 H 0.15 4.97 8.01 -2.91 -0.02 4.95 16 39 H 0.16 4.54 7.80 -2.91 -0.02 4.52 16 Total: -1.00 -66.42 339.74 3.77 -62.65 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: 1.79 Total: 19.60 kcal Atomic # 6 Polarization: 25.76 SS G_CDS: 6.72 Total: 32.48 kcal Atomic # 7 Polarization: -102.50 SS G_CDS: -4.98 Total: -107.47 kcal Atomic # 8 Polarization: -48.27 SS G_CDS: -0.14 Total: -48.41 kcal Atomic # 14 Polarization: 40.23 SS G_CDS: 1.72 Total: 41.95 kcal Atomic # 16 Polarization: 0.54 SS G_CDS: -1.34 Total: -0.80 kcal Total: -66.42 3.77 -62.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748526253.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.791 kcal (2) G-P(sol) polarization free energy of solvation -66.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds