Wall clock time and date at job start Tue Mar 31 2020 17:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46494 * 120.00160 * 2 1 4 4 C 1.52996 * 109.47306 * 270.00107 * 3 2 1 5 5 C 1.50710 * 109.47357 * 179.97438 * 4 3 2 6 6 N 1.34496 * 126.28180 * 89.99960 * 5 4 3 7 7 C 1.31132 * 105.61096 * 179.97438 * 6 5 4 8 8 O 1.33639 * 106.89900 * 359.97438 * 7 6 5 9 9 N 1.21300 * 109.81288 * 359.73645 * 8 7 6 10 10 C 1.34783 * 119.99924 * 180.02562 * 2 1 3 11 11 O 1.21615 * 119.99606 * 174.65925 * 10 2 1 12 12 C 1.47426 * 120.00107 * 354.65732 * 10 2 1 13 13 C 1.39677 * 120.21302 * 309.12233 * 12 10 2 14 14 C 1.37815 * 119.93683 * 180.27566 * 13 12 10 15 15 C 1.38662 * 120.37875 * 359.72144 * 14 13 12 16 16 C 1.37910 * 120.43798 * 0.02593 * 15 14 13 17 17 C 1.39109 * 120.05087 * 359.97388 * 16 15 14 18 18 S 1.76206 * 120.18822 * 180.02562 * 17 16 15 19 19 C 1.76198 * 99.99868 * 8.25377 * 18 17 16 20 20 H 1.08001 * 120.00279 * 354.93556 * 19 18 17 21 21 C 1.38807 * 119.99956 * 174.92971 * 19 18 17 22 22 N 1.31551 * 120.00272 * 180.02562 * 21 19 18 23 23 Si 1.86804 * 120.00132 * 0.02562 * 21 19 18 24 24 H 1.48496 * 109.46982 * 89.99830 * 23 21 19 25 25 H 1.48497 * 109.47460 * 209.99986 * 23 21 19 26 26 H 1.48501 * 109.46822 * 330.00240 * 23 21 19 27 27 H 1.09000 * 109.46676 * 274.35648 * 1 2 3 28 28 H 1.08994 * 109.46965 * 34.36321 * 1 2 3 29 29 H 1.09003 * 109.47050 * 154.36199 * 1 2 3 30 30 H 1.09002 * 109.47330 * 30.00643 * 3 2 1 31 31 H 1.09006 * 109.47402 * 150.00431 * 3 2 1 32 32 H 1.08999 * 109.47748 * 299.99858 * 4 3 2 33 33 H 1.09004 * 109.47136 * 59.99896 * 4 3 2 34 34 H 1.08004 * 126.55254 * 179.97438 * 7 6 5 35 35 H 1.08003 * 120.03446 * 359.97438 * 13 12 10 36 36 H 1.07993 * 119.80672 * 179.74708 * 14 13 12 37 37 H 1.07996 * 119.77618 * 180.02562 * 15 14 13 38 38 H 1.08004 * 119.97487 * 180.02562 * 16 15 14 39 39 H 0.96998 * 120.00381 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4424 5 6 3.2055 3.0158 -1.4425 6 7 4.5424 3.1635 -1.4423 7 6 4.7544 4.4576 -1.4430 8 8 3.5554 5.0477 -1.4440 9 7 2.6826 4.2054 -1.4493 10 6 2.1389 -1.1673 -0.0005 11 8 3.3511 -1.1694 -0.0986 12 6 1.4066 -2.4413 0.1178 13 6 0.4748 -2.6239 1.1422 14 6 -0.2024 -3.8193 1.2509 15 6 0.0311 -4.8424 0.3446 16 6 0.9439 -4.6770 -0.6759 17 6 1.6376 -3.4779 -0.8025 18 16 2.8041 -3.2624 -2.1054 19 6 2.4968 -4.7265 -3.0364 20 1 1.8047 -5.4675 -2.6647 21 6 3.1443 -4.9274 -4.2476 22 7 2.9146 -6.0202 -4.9430 23 14 4.3420 -3.6460 -4.8904 24 1 5.7075 -3.9514 -4.3934 25 1 4.3395 -3.6668 -6.3752 26 1 3.9309 -2.3011 -4.4135 27 1 -0.3633 0.0781 1.0247 28 1 -0.3633 0.8483 -0.5800 29 1 -0.3633 -0.9265 -0.4447 30 1 1.6085 2.0283 0.5139 31 1 3.1500 1.1383 0.5138 32 1 3.0416 0.9508 -1.9564 33 1 1.5001 1.8407 -1.9563 34 1 5.7146 4.9520 -1.4427 35 1 0.2887 -1.8309 1.8514 36 1 -0.9194 -3.9597 2.0462 37 1 -0.5053 -5.7750 0.4387 38 1 1.1197 -5.4788 -1.3778 39 1 3.3673 -6.1608 -5.7893 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363616320.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:22 Heat of formation + Delta-G solvation = 72.559445 kcal Electronic energy + Delta-G solvation = -25396.574858 eV Core-core repulsion = 21627.498793 eV Total energy + Delta-G solvation = -3769.076065 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 333.093 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -45.81850 -39.97171 -37.82710 -36.52901 -35.43747 -33.24897 -32.76407 -31.47076 -30.49929 -30.00945 -26.80900 -25.98530 -25.22259 -24.30658 -22.82634 -22.14965 -21.84148 -19.58123 -18.29265 -18.08889 -17.98697 -17.01621 -16.32302 -16.09436 -15.94789 -15.45610 -15.19006 -14.72560 -14.24497 -13.89075 -13.58958 -13.53490 -13.15490 -12.98754 -12.83268 -12.62810 -12.59547 -12.38796 -12.06955 -11.96292 -11.72777 -11.35965 -11.32105 -11.22430 -11.07143 -11.01730 -10.57273 -10.33546 -9.78985 -9.68470 -9.46854 -8.89485 -8.75285 -8.58028 -8.42864 -6.88024 -6.52201 -4.26388 0.96838 1.49234 1.86504 2.03574 2.78207 2.79641 2.95818 3.16655 3.17683 3.30653 3.39399 3.63159 3.94426 4.09748 4.22133 4.52936 4.69160 4.89016 4.89910 4.94422 5.08151 5.16502 5.23512 5.28096 5.47224 5.49455 5.52939 5.66133 5.74897 5.77467 5.86229 5.97923 6.04093 6.19605 6.44190 6.55976 6.74543 6.89145 7.01058 7.39234 7.49092 7.71034 7.96447 8.28926 8.44954 8.90346 10.54801 Molecular weight = 333.09amu Principal moments of inertia in cm(-1) A = 0.010156 B = 0.004196 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2756.347526 B = 6670.909122 C = 9005.366261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.618 5.618 3 C 0.131 3.869 4 C -0.051 4.051 5 C 0.181 3.819 6 N -0.477 5.477 7 C 0.156 3.844 8 O 0.073 5.927 9 N -0.384 5.384 10 C 0.569 3.431 11 O -0.512 6.512 12 C -0.158 4.158 13 C -0.069 4.069 14 C -0.170 4.170 15 C -0.080 4.080 16 C -0.141 4.141 17 C -0.023 4.023 18 S 0.010 5.990 19 C -0.554 4.554 20 H 0.110 0.890 21 C 0.104 3.896 22 N -0.862 5.862 23 Si 0.848 3.152 24 H -0.262 1.262 25 H -0.268 1.268 26 H -0.236 1.236 27 H 0.055 0.945 28 H 0.066 0.934 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.107 0.893 33 H 0.093 0.907 34 H 0.263 0.737 35 H 0.117 0.883 36 H 0.116 0.884 37 H 0.117 0.883 38 H 0.147 0.853 39 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.823 17.679 9.771 20.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.352 5.352 3 C 0.006 3.994 4 C -0.092 4.092 5 C -0.092 4.092 6 N -0.209 5.209 7 C -0.085 4.085 8 O 0.015 5.985 9 N -0.091 5.091 10 C 0.358 3.642 11 O -0.386 6.386 12 C -0.171 4.171 13 C -0.089 4.089 14 C -0.193 4.193 15 C -0.101 4.101 16 C -0.166 4.166 17 C -0.141 4.141 18 S 0.268 5.732 19 C -0.700 4.700 20 H 0.127 0.873 21 C -0.107 4.107 22 N -0.496 5.496 23 Si 0.672 3.328 24 H -0.187 1.187 25 H -0.193 1.193 26 H -0.160 1.160 27 H 0.073 0.927 28 H 0.085 0.915 29 H 0.101 0.899 30 H 0.095 0.905 31 H 0.107 0.893 32 H 0.125 0.875 33 H 0.112 0.888 34 H 0.278 0.722 35 H 0.135 0.865 36 H 0.134 0.866 37 H 0.135 0.865 38 H 0.164 0.836 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.878 18.125 9.034 20.455 hybrid contribution -0.125 -0.495 -0.280 0.582 sum -3.003 17.630 8.754 19.912 Atomic orbital electron populations 1.21881 0.79175 1.03768 1.01561 1.47721 1.07065 1.05131 1.75331 1.21200 0.98415 0.85180 0.94577 1.20458 0.99628 0.88890 1.00184 1.25813 0.87522 0.95679 1.00171 1.71995 1.14504 1.15901 1.18520 1.30555 0.93541 0.88105 0.96346 1.85297 1.13666 1.34281 1.65296 1.74666 1.13613 0.99830 1.21029 1.18416 0.87132 0.83345 0.75334 1.90814 1.13586 1.86824 1.47395 1.19152 1.02977 0.93995 1.00986 1.20912 0.94187 0.97452 0.96367 1.20756 1.03079 0.94258 1.01227 1.21140 0.96674 0.98241 0.94067 1.21554 0.97672 0.97666 0.99721 1.22297 0.98497 0.94679 0.98579 1.83523 1.40440 1.29919 1.19326 1.22992 1.32859 1.05861 1.08271 0.87271 1.24763 0.95493 0.95410 0.95067 1.69881 1.40694 1.24969 1.14040 0.86897 0.82519 0.83647 0.79739 1.18684 1.19281 1.15972 0.92668 0.91520 0.89857 0.90459 0.89315 0.87453 0.88834 0.72183 0.86526 0.86639 0.86517 0.83615 0.91419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.85 9.17 59.85 0.55 1.40 16 2 N -0.62 -8.74 2.87 -182.85 -0.53 -9.27 16 3 C 0.13 1.66 5.37 -4.05 -0.02 1.64 16 4 C -0.05 -0.68 6.17 -27.88 -0.17 -0.85 16 5 C 0.18 2.34 7.47 -156.37 -1.17 1.18 16 6 N -0.48 -5.97 11.55 -13.72 -0.16 -6.13 16 7 C 0.16 1.20 13.40 51.98 0.70 1.90 16 8 O 0.07 0.70 11.31 18.11 0.20 0.90 16 9 N -0.38 -4.65 12.16 30.87 0.38 -4.28 16 10 C 0.57 10.51 6.60 -12.52 -0.08 10.43 16 11 O -0.51 -11.25 15.49 5.26 0.08 -11.17 16 12 C -0.16 -2.95 4.61 -104.76 -0.48 -3.43 16 13 C -0.07 -1.04 8.00 -39.20 -0.31 -1.35 16 14 C -0.17 -2.44 10.02 -39.58 -0.40 -2.83 16 15 C -0.08 -1.30 10.03 -39.55 -0.40 -1.70 16 16 C -0.14 -2.87 9.25 -39.38 -0.36 -3.23 16 17 C -0.02 -0.50 6.13 -38.40 -0.24 -0.74 16 18 S 0.01 0.26 17.77 -107.50 -1.91 -1.65 16 19 C -0.55 -15.30 9.62 30.94 0.30 -15.00 16 20 H 0.11 3.10 5.09 -52.49 -0.27 2.83 16 21 C 0.10 2.90 5.50 -17.46 -0.10 2.81 16 22 N -0.86 -24.83 13.96 55.49 0.77 -24.06 16 23 Si 0.85 20.76 27.74 -169.99 -4.71 16.05 16 24 H -0.26 -6.41 7.11 56.52 0.40 -6.01 16 25 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 26 H -0.24 -5.72 6.74 56.52 0.38 -5.34 16 27 H 0.05 0.48 7.62 -51.93 -0.40 0.08 16 28 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 29 H 0.08 1.01 6.33 -51.93 -0.33 0.68 16 30 H 0.08 0.79 8.07 -51.93 -0.42 0.37 16 31 H 0.09 1.28 7.50 -51.93 -0.39 0.89 16 32 H 0.11 1.72 8.14 -51.93 -0.42 1.29 16 33 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.26 0.42 8.06 -52.48 -0.42 0.00 16 35 H 0.12 1.41 7.15 -52.48 -0.38 1.04 16 36 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 37 H 0.12 1.59 8.06 -52.49 -0.42 1.16 16 38 H 0.15 3.23 4.99 -52.48 -0.26 2.97 16 39 H 0.28 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 348.75 15.07 5.26 5.26 Total: -1.00 -34.40 348.75 -6.93 -41.33 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -4.13 Total: 2.81 kcal Atomic # 6 Polarization: -7.61 SS G_CDS: -2.19 Total: -9.79 kcal Atomic # 7 Polarization: -44.20 SS G_CDS: 0.47 Total: -43.73 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.29 Total: -10.27 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -4.71 Total: 16.05 kcal Atomic # 16 Polarization: 0.26 SS G_CDS: -1.91 Total: -1.65 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.40 -6.93 -41.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363616320.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.890 kcal (2) G-P(sol) polarization free energy of solvation -34.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds