Wall clock time and date at job start Tue Mar 31 2020 17:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46494 * 120.00160 * 2 1 4 4 C 1.52996 * 109.47306 * 270.00107 * 3 2 1 5 5 C 1.50710 * 109.47357 * 179.97438 * 4 3 2 6 6 N 1.34496 * 126.28180 * 89.99960 * 5 4 3 7 7 C 1.31132 * 105.61096 * 179.97438 * 6 5 4 8 8 O 1.33639 * 106.89900 * 359.97438 * 7 6 5 9 9 N 1.21300 * 109.81288 * 359.73645 * 8 7 6 10 10 C 1.34783 * 119.99924 * 180.02562 * 2 1 3 11 11 O 1.21615 * 119.99606 * 174.65925 * 10 2 1 12 12 C 1.47426 * 120.00107 * 354.65732 * 10 2 1 13 13 C 1.39677 * 120.21302 * 309.12233 * 12 10 2 14 14 C 1.37815 * 119.93683 * 180.27566 * 13 12 10 15 15 C 1.38662 * 120.37875 * 359.72144 * 14 13 12 16 16 C 1.37910 * 120.43798 * 0.02593 * 15 14 13 17 17 C 1.39109 * 120.05087 * 359.97388 * 16 15 14 18 18 S 1.76206 * 120.18822 * 180.02562 * 17 16 15 19 19 C 1.76198 * 99.99868 * 8.25377 * 18 17 16 20 20 H 1.08001 * 120.00279 * 354.93556 * 19 18 17 21 21 C 1.38807 * 119.99956 * 174.92971 * 19 18 17 22 22 N 1.31551 * 120.00272 * 180.02562 * 21 19 18 23 23 Si 1.86804 * 120.00132 * 0.02562 * 21 19 18 24 24 H 1.48496 * 109.46982 * 89.99830 * 23 21 19 25 25 H 1.48497 * 109.47460 * 209.99986 * 23 21 19 26 26 H 1.48501 * 109.46822 * 330.00240 * 23 21 19 27 27 H 1.09000 * 109.46676 * 274.35648 * 1 2 3 28 28 H 1.08994 * 109.46965 * 34.36321 * 1 2 3 29 29 H 1.09003 * 109.47050 * 154.36199 * 1 2 3 30 30 H 1.09002 * 109.47330 * 30.00643 * 3 2 1 31 31 H 1.09006 * 109.47402 * 150.00431 * 3 2 1 32 32 H 1.08999 * 109.47748 * 299.99858 * 4 3 2 33 33 H 1.09004 * 109.47136 * 59.99896 * 4 3 2 34 34 H 1.08004 * 126.55254 * 179.97438 * 7 6 5 35 35 H 1.08003 * 120.03446 * 359.97438 * 13 12 10 36 36 H 1.07993 * 119.80672 * 179.74708 * 14 13 12 37 37 H 1.07996 * 119.77618 * 180.02562 * 15 14 13 38 38 H 1.08004 * 119.97487 * 180.02562 * 16 15 14 39 39 H 0.96998 * 120.00381 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4424 5 6 3.2055 3.0158 -1.4425 6 7 4.5424 3.1635 -1.4423 7 6 4.7544 4.4576 -1.4430 8 8 3.5554 5.0477 -1.4440 9 7 2.6826 4.2054 -1.4493 10 6 2.1389 -1.1673 -0.0005 11 8 3.3511 -1.1694 -0.0986 12 6 1.4066 -2.4413 0.1178 13 6 0.4748 -2.6239 1.1422 14 6 -0.2024 -3.8193 1.2509 15 6 0.0311 -4.8424 0.3446 16 6 0.9439 -4.6770 -0.6759 17 6 1.6376 -3.4779 -0.8025 18 16 2.8041 -3.2624 -2.1054 19 6 2.4968 -4.7265 -3.0364 20 1 1.8047 -5.4675 -2.6647 21 6 3.1443 -4.9274 -4.2476 22 7 2.9146 -6.0202 -4.9430 23 14 4.3420 -3.6460 -4.8904 24 1 5.7075 -3.9514 -4.3934 25 1 4.3395 -3.6668 -6.3752 26 1 3.9309 -2.3011 -4.4135 27 1 -0.3633 0.0781 1.0247 28 1 -0.3633 0.8483 -0.5800 29 1 -0.3633 -0.9265 -0.4447 30 1 1.6085 2.0283 0.5139 31 1 3.1500 1.1383 0.5138 32 1 3.0416 0.9508 -1.9564 33 1 1.5001 1.8407 -1.9563 34 1 5.7146 4.9520 -1.4427 35 1 0.2887 -1.8309 1.8514 36 1 -0.9194 -3.9597 2.0462 37 1 -0.5053 -5.7750 0.4387 38 1 1.1197 -5.4788 -1.3778 39 1 3.3673 -6.1608 -5.7893 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363616320.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:22 Heat of formation + Delta-G solvation = 47.502600 kcal Electronic energy + Delta-G solvation = -25397.661404 eV Core-core repulsion = 21627.498793 eV Total energy + Delta-G solvation = -3770.162612 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 333.093 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -46.64468 -41.31666 -39.20249 -37.56034 -36.55947 -34.87277 -34.18317 -32.63632 -31.93657 -31.18420 -28.06814 -27.78180 -26.38597 -25.11123 -24.02118 -23.56570 -22.85229 -21.02865 -19.73324 -19.11362 -18.86712 -18.40524 -17.76549 -17.42457 -17.21667 -16.76566 -16.57888 -16.08438 -15.58364 -15.23266 -15.14411 -14.68961 -14.53384 -14.26952 -14.07122 -13.78412 -13.69975 -13.67250 -13.47616 -13.22958 -13.08641 -13.02909 -12.65185 -12.62630 -12.31918 -12.27193 -12.01661 -11.53622 -11.41714 -11.21558 -11.13397 -10.60841 -10.54266 -9.85985 -9.73951 -8.73781 -8.63223 -6.36754 0.07884 0.23925 0.45103 0.95081 1.18435 1.19776 1.33732 1.54912 1.65065 1.94883 2.09988 2.19792 2.53843 2.72295 2.79195 2.86936 3.12016 3.55379 3.91699 3.92805 4.01976 4.08792 4.21961 4.28815 4.35707 4.53521 4.59022 4.65847 4.68399 4.75926 4.78766 4.86677 4.95876 5.06069 5.07705 5.36143 5.44595 5.50666 5.60230 5.63431 6.02679 6.14081 6.26068 6.78954 7.09865 7.19490 8.47378 Molecular weight = 333.09amu Principal moments of inertia in cm(-1) A = 0.010156 B = 0.004196 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2756.347526 B = 6670.909122 C = 9005.366261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.607 5.607 3 C 0.137 3.863 4 C -0.045 4.045 5 C 0.164 3.836 6 N -0.529 5.529 7 C 0.187 3.813 8 O 0.081 5.919 9 N -0.395 5.395 10 C 0.561 3.439 11 O -0.560 6.560 12 C -0.157 4.157 13 C -0.059 4.059 14 C -0.138 4.138 15 C -0.076 4.076 16 C -0.163 4.163 17 C -0.049 4.049 18 S -0.048 6.048 19 C -0.558 4.558 20 H 0.088 0.912 21 C 0.058 3.942 22 N -0.903 5.903 23 Si 0.900 3.100 24 H -0.263 1.263 25 H -0.249 1.249 26 H -0.240 1.240 27 H 0.091 0.909 28 H 0.090 0.910 29 H 0.069 0.931 30 H 0.113 0.887 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.105 0.895 34 H 0.319 0.681 35 H 0.161 0.839 36 H 0.170 0.830 37 H 0.148 0.852 38 H 0.114 0.886 39 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.810 20.550 12.718 24.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.340 5.340 3 C 0.013 3.987 4 C -0.085 4.085 5 C -0.108 4.108 6 N -0.262 5.262 7 C -0.052 4.052 8 O 0.021 5.979 9 N -0.102 5.102 10 C 0.350 3.650 11 O -0.438 6.438 12 C -0.169 4.169 13 C -0.078 4.078 14 C -0.159 4.159 15 C -0.097 4.097 16 C -0.188 4.188 17 C -0.165 4.165 18 S 0.205 5.795 19 C -0.705 4.705 20 H 0.105 0.895 21 C -0.149 4.149 22 N -0.539 5.539 23 Si 0.722 3.278 24 H -0.188 1.188 25 H -0.173 1.173 26 H -0.164 1.164 27 H 0.109 0.891 28 H 0.108 0.892 29 H 0.088 0.912 30 H 0.131 0.869 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.123 0.877 34 H 0.333 0.667 35 H 0.178 0.822 36 H 0.187 0.813 37 H 0.166 0.834 38 H 0.132 0.868 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.957 21.011 12.039 24.718 hybrid contribution 0.298 -1.263 -0.892 1.574 sum -4.659 19.748 11.148 23.150 Atomic orbital electron populations 1.22192 0.76578 1.04188 1.04160 1.47762 1.08630 1.04298 1.73303 1.21252 0.98041 0.85073 0.94357 1.20268 0.99565 0.88504 1.00183 1.25680 0.87942 0.95714 1.01513 1.71976 1.14603 1.18604 1.20974 1.31666 0.94339 0.86792 0.92376 1.85262 1.14132 1.33580 1.64973 1.74642 1.14601 0.99555 1.21401 1.18556 0.86672 0.84540 0.75270 1.90792 1.15647 1.87566 1.49834 1.19439 1.03243 0.93339 1.00868 1.21418 0.92166 0.99035 0.95206 1.21385 1.01739 0.92356 1.00465 1.21516 0.95132 1.00360 0.92660 1.21451 0.99635 0.96601 1.01099 1.22236 0.99112 0.96597 0.98571 1.83409 1.44727 1.29340 1.22023 1.23094 1.32221 1.06437 1.08715 0.89462 1.25479 0.97005 0.97057 0.95374 1.69948 1.42461 1.26595 1.14890 0.86118 0.80355 0.81355 0.80014 1.18770 1.17305 1.16384 0.89096 0.89162 0.91235 0.86936 0.91445 0.91338 0.87714 0.66672 0.82202 0.81285 0.83404 0.86833 0.90955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.25 9.17 127.77 1.17 2.42 16 2 N -0.61 -16.24 2.87 -850.67 -2.44 -18.69 16 3 C 0.14 3.34 5.37 86.38 0.46 3.81 16 4 C -0.04 -1.21 6.17 29.85 0.18 -1.02 16 5 C 0.16 4.19 7.47 138.47 1.03 5.23 16 6 N -0.53 -12.97 11.55 -315.39 -3.64 -16.61 16 7 C 0.19 2.43 13.40 130.51 1.75 4.18 16 8 O 0.08 1.35 11.31 74.87 0.85 2.20 16 9 N -0.39 -8.99 12.16 -60.40 -0.73 -9.72 16 10 C 0.56 20.71 6.60 86.66 0.57 21.28 16 11 O -0.56 -25.72 15.49 -4.08 -0.06 -25.78 16 12 C -0.16 -5.71 4.61 -19.95 -0.09 -5.80 16 13 C -0.06 -1.50 8.00 22.52 0.18 -1.32 16 14 C -0.14 -3.19 10.02 22.27 0.22 -2.96 16 15 C -0.08 -2.28 10.03 22.29 0.22 -2.05 16 16 C -0.16 -6.79 9.25 22.40 0.21 -6.58 16 17 C -0.05 -2.21 6.13 23.04 0.14 -2.07 16 18 S -0.05 -2.55 17.77 -56.49 -1.00 -3.56 16 19 C -0.56 -33.09 9.62 67.96 0.65 -32.43 16 20 H 0.09 5.40 5.09 -2.91 -0.01 5.38 16 21 C 0.06 3.42 5.50 84.87 0.47 3.89 16 22 N -0.90 -54.70 13.96 21.65 0.30 -54.40 16 23 Si 0.90 45.12 27.74 68.60 1.90 47.03 16 24 H -0.26 -13.05 7.11 99.48 0.71 -12.34 16 25 H -0.25 -11.53 7.11 99.48 0.71 -10.83 16 26 H -0.24 -12.06 6.74 99.48 0.67 -11.39 16 27 H 0.09 1.03 7.62 -2.39 -0.02 1.01 16 28 H 0.09 1.23 8.10 -2.39 -0.02 1.21 16 29 H 0.07 1.47 6.33 -2.39 -0.02 1.45 16 30 H 0.11 1.97 8.07 -2.39 -0.02 1.95 16 31 H 0.07 1.96 7.50 -2.38 -0.02 1.95 16 32 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 33 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 34 H 0.32 -0.35 8.06 -2.91 -0.02 -0.37 16 35 H 0.16 2.79 7.15 -2.91 -0.02 2.77 16 36 H 0.17 2.34 8.06 -2.91 -0.02 2.31 16 37 H 0.15 3.48 8.06 -2.91 -0.02 3.45 16 38 H 0.11 5.45 4.99 -2.91 -0.01 5.43 16 39 H 0.28 15.66 8.31 -92.71 -0.77 14.89 16 Total: -1.00 -84.71 348.75 3.41 -81.31 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: 1.06 Total: 11.67 kcal Atomic # 6 Polarization: -20.62 SS G_CDS: 7.18 Total: -13.44 kcal Atomic # 7 Polarization: -92.90 SS G_CDS: -6.52 Total: -99.42 kcal Atomic # 8 Polarization: -24.37 SS G_CDS: 0.78 Total: -23.58 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 1.90 Total: 47.03 kcal Atomic # 16 Polarization: -2.55 SS G_CDS: -1.00 Total: -3.56 kcal Total: -84.71 3.41 -81.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363616320.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.808 kcal (2) G-P(sol) polarization free energy of solvation -84.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds