Wall clock time and date at job start Tue Mar 31 2020 17:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42896 * 114.00182 * 2 1 4 4 C 1.53008 * 109.47341 * 180.02562 * 3 2 1 5 5 N 1.46493 * 109.46797 * 65.00180 * 4 3 2 6 6 C 1.36946 * 119.99857 * 264.24906 * 5 4 3 7 7 H 1.07998 * 119.99847 * 133.31419 * 6 5 4 8 8 C 1.38974 * 120.00160 * 313.32052 * 6 5 4 9 9 N 1.31414 * 120.00202 * 2.17315 * 8 6 5 10 10 Si 1.86806 * 120.00187 * 182.17900 * 8 6 5 11 11 H 1.48501 * 109.46996 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47413 * 119.99848 * 10 8 6 13 13 H 1.48496 * 109.47061 * 239.99905 * 10 8 6 14 14 C 1.34778 * 120.00241 * 84.25433 * 5 4 3 15 15 O 1.21657 * 119.99658 * 5.24531 * 14 5 4 16 16 C 1.47251 * 119.99988 * 185.24619 * 14 5 4 17 17 C 1.36408 * 122.56368 * 174.48133 * 16 14 5 18 18 S 1.71014 * 108.98098 * 179.77089 * 17 16 14 19 19 C 1.75970 * 90.63156 * 0.31494 * 18 17 16 20 20 C 1.47913 * 125.21748 * 179.97438 * 19 18 17 21 21 C 1.39483 * 119.74053 * 359.69166 * 20 19 18 22 22 C 1.38384 * 119.05304 * 179.97438 * 21 20 19 23 23 C 1.38793 * 118.52164 * 0.02562 * 22 21 20 24 24 C 1.38308 * 119.39059 * 0.27326 * 23 22 21 25 25 N 1.31705 * 120.91140 * 359.42948 * 24 23 22 26 26 N 1.29780 * 109.56172 * 359.68040 * 19 18 17 27 27 H 1.09002 * 109.46684 * 299.99814 * 1 2 3 28 28 H 1.08996 * 109.47601 * 59.99423 * 1 2 3 29 29 H 1.09002 * 109.47247 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47183 * 60.00237 * 3 2 1 31 31 H 1.09001 * 109.47646 * 300.00292 * 3 2 1 32 32 H 1.08998 * 109.46717 * 304.99962 * 4 3 2 33 33 H 1.08999 * 109.46759 * 185.00521 * 4 3 2 34 34 H 0.97004 * 119.99894 * 179.97438 * 9 8 6 35 35 H 1.08004 * 125.50685 * 0.02562 * 17 16 14 36 36 H 1.08004 * 120.47386 * 0.02562 * 21 20 19 37 37 H 1.08009 * 120.73913 * 180.02562 * 22 21 20 38 38 H 1.08006 * 120.30242 * 180.02562 * 23 22 21 39 39 H 1.08000 * 119.53929 * 179.69885 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9756 0.5644 -1.2527 6 6 4.2101 -0.7838 -1.3036 7 1 3.8129 -1.3707 -2.1186 8 6 4.9592 -1.3970 -0.3064 9 7 5.4064 -0.6909 0.7077 10 14 5.3306 -3.2250 -0.4076 11 1 4.7177 -3.7872 -1.6378 12 1 6.8008 -3.4300 -0.4482 13 1 4.7678 -3.9110 0.7832 14 6 4.1499 1.3208 -2.3546 15 8 4.0347 2.5300 -2.2868 16 6 4.4796 0.6835 -3.6405 17 6 4.5592 1.3842 -4.8081 18 16 4.9674 0.3100 -6.0747 19 6 4.9985 -1.0398 -4.9461 20 6 5.3014 -2.4430 -5.3027 21 6 5.5854 -2.7744 -6.6275 22 6 5.8673 -4.0914 -6.9451 23 6 5.8556 -5.0356 -5.9279 24 6 5.5594 -4.6384 -4.6366 25 7 5.3001 -3.3773 -4.3593 26 7 4.7212 -0.6141 -3.7519 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.6886 1.8463 0.8900 31 1 1.6886 1.8464 -0.8899 32 1 3.8514 0.5682 0.8409 33 1 3.9785 2.1765 0.0890 34 1 5.9289 -1.1190 1.4038 35 1 4.3953 2.4464 -4.9147 36 1 5.5862 -2.0138 -7.3943 37 1 6.0913 -4.3783 -7.9621 38 1 6.0718 -6.0716 -6.1434 39 1 5.5449 -5.3720 -3.8440 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001450854748.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:41 Heat of formation + Delta-G solvation = 31.376458 kcal Electronic energy + Delta-G solvation = -26347.655401 eV Core-core repulsion = 22576.793508 eV Total energy + Delta-G solvation = -3770.861894 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 333.093 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.14101 -39.40373 -37.75433 -36.71283 -34.63559 -32.58085 -32.13158 -31.37885 -29.43490 -28.98801 -25.94382 -25.41968 -24.63223 -23.69296 -23.38507 -21.58729 -20.20748 -18.80757 -18.28221 -16.81641 -16.76785 -16.01894 -15.78184 -15.65079 -15.33928 -14.95281 -14.55300 -14.46937 -14.17046 -14.09420 -13.80756 -13.55044 -13.13480 -13.00176 -12.79655 -12.53448 -12.00356 -11.82577 -11.53392 -11.40476 -11.10066 -10.85786 -10.83955 -10.60005 -10.02260 -9.99871 -9.96926 -9.63701 -9.27118 -9.19383 -9.01265 -8.96145 -8.81727 -8.35413 -8.03666 -7.24348 -6.06216 -3.80068 0.42171 1.25919 1.50232 1.55244 2.00491 2.90545 3.40907 3.46052 3.64777 3.95680 4.06839 4.38865 4.49715 4.55087 4.60209 4.79435 4.87104 5.01167 5.02175 5.22815 5.38584 5.57225 5.66237 5.71471 5.74669 5.77902 5.91685 5.99384 6.04158 6.08799 6.11854 6.24280 6.42287 6.57127 6.66617 6.86003 7.47269 7.87864 7.94870 7.99646 8.13901 8.28374 8.76153 9.33523 9.57637 10.00455 10.95052 Molecular weight = 333.09amu Principal moments of inertia in cm(-1) A = 0.011039 B = 0.005292 C = 0.004184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2535.775174 B = 5289.762306 C = 6690.155723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.363 6.363 3 C 0.053 3.947 4 C 0.107 3.893 5 N -0.402 5.402 6 C -0.281 4.281 7 H 0.115 0.885 8 C 0.042 3.958 9 N -0.886 5.886 10 Si 0.916 3.084 11 H -0.242 1.242 12 H -0.289 1.289 13 H -0.293 1.293 14 C 0.523 3.477 15 O -0.608 6.608 16 C 0.056 3.944 17 C -0.227 4.227 18 S 0.121 5.879 19 C 0.059 3.941 20 C 0.210 3.790 21 C -0.160 4.160 22 C -0.073 4.073 23 C -0.174 4.174 24 C 0.107 3.893 25 N -0.433 5.433 26 N -0.337 5.337 27 H 0.030 0.970 28 H 0.030 0.970 29 H 0.077 0.923 30 H 0.041 0.959 31 H 0.037 0.963 32 H 0.131 0.869 33 H 0.069 0.931 34 H 0.264 0.736 35 H 0.185 0.815 36 H 0.135 0.865 37 H 0.137 0.863 38 H 0.136 0.864 39 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.685 -5.776 -13.202 14.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.281 6.281 3 C -0.025 4.025 4 C -0.017 4.017 5 N -0.117 5.117 6 C -0.411 4.411 7 H 0.132 0.868 8 C -0.160 4.160 9 N -0.526 5.526 10 Si 0.743 3.257 11 H -0.165 1.165 12 H -0.216 1.216 13 H -0.220 1.220 14 C 0.309 3.691 15 O -0.496 6.496 16 C -0.081 4.081 17 C -0.369 4.369 18 S 0.376 5.624 19 C -0.217 4.217 20 C 0.070 3.930 21 C -0.182 4.182 22 C -0.099 4.099 23 C -0.195 4.195 24 C -0.052 4.052 25 N -0.143 5.143 26 N -0.050 5.050 27 H 0.048 0.952 28 H 0.048 0.952 29 H 0.096 0.904 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.148 0.852 33 H 0.087 0.913 34 H 0.074 0.926 35 H 0.202 0.798 36 H 0.153 0.847 37 H 0.155 0.845 38 H 0.154 0.846 39 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -1.576 -5.383 -12.692 13.876 hybrid contribution 0.024 -0.407 0.092 0.418 sum -1.553 -5.790 -12.600 13.953 Atomic orbital electron populations 1.22635 0.83538 1.01704 0.98714 1.88155 1.17264 1.27701 1.95004 1.23046 0.96653 0.84295 0.98513 1.21762 0.88864 0.99471 0.91557 1.43335 1.53397 1.08084 1.06841 1.20007 1.29245 0.81747 1.10080 0.86760 1.25452 0.95039 1.00105 0.95438 1.69681 1.35637 1.36397 1.10846 0.85962 0.77859 0.83161 0.78722 1.16454 1.21566 1.21974 1.17425 0.82546 0.85596 0.83490 1.90628 1.59576 1.13506 1.85860 1.20883 1.03750 0.87611 0.95887 1.26789 1.08667 1.05921 0.95516 1.83213 1.64421 1.00947 1.13794 1.25960 1.08514 0.96151 0.91082 1.18617 0.95849 0.89440 0.89108 1.21957 1.02249 0.97794 0.96216 1.21411 0.96343 0.92290 0.99838 1.22258 1.02034 1.00878 0.94341 1.22894 0.94083 0.92523 0.95696 1.67873 1.10341 1.00811 1.35239 1.67694 1.07422 1.12257 1.17636 0.95175 0.95154 0.90433 0.94119 0.94446 0.85187 0.91287 0.92561 0.79796 0.84746 0.84492 0.84649 0.82459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 11.01 101.05 1.11 1.64 16 2 O -0.36 -8.14 10.45 -35.23 -0.37 -8.51 16 3 C 0.05 1.15 6.24 37.16 0.23 1.38 16 4 C 0.11 2.69 5.28 -4.04 -0.02 2.66 16 5 N -0.40 -10.85 2.47 -116.09 -0.29 -11.14 16 6 C -0.28 -7.75 7.46 -14.99 -0.11 -7.86 16 7 H 0.12 3.22 5.95 -52.49 -0.31 2.91 16 8 C 0.04 1.16 5.34 -17.46 -0.09 1.07 16 9 N -0.89 -25.04 10.94 55.50 0.61 -24.43 16 10 Si 0.92 21.92 29.55 -169.99 -5.02 16.90 16 11 H -0.24 -5.56 7.11 56.52 0.40 -5.16 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 14 C 0.52 13.76 7.56 -12.60 -0.10 13.66 16 15 O -0.61 -16.52 16.34 5.23 0.09 -16.44 16 16 C 0.06 1.29 6.53 -84.59 -0.55 0.73 16 17 C -0.23 -4.22 10.64 30.07 0.32 -3.90 16 18 S 0.12 1.78 22.08 -107.50 -2.37 -0.59 16 19 C 0.06 1.11 7.38 -14.46 -0.11 1.00 16 20 C 0.21 3.51 6.75 -83.03 -0.56 2.95 16 21 C -0.16 -1.95 9.63 -39.06 -0.38 -2.33 16 22 C -0.07 -0.72 10.16 -39.32 -0.40 -1.11 16 23 C -0.17 -1.79 10.11 -39.35 -0.40 -2.18 16 24 C 0.11 1.48 11.17 -17.58 -0.20 1.29 16 25 N -0.43 -7.92 10.25 -9.84 -0.10 -8.02 16 26 N -0.34 -7.70 6.91 -7.89 -0.05 -7.76 16 27 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.13 3.52 5.44 -51.93 -0.28 3.24 16 33 H 0.07 1.73 7.53 -51.93 -0.39 1.34 16 34 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 35 H 0.18 3.13 8.02 -52.48 -0.42 2.71 16 36 H 0.13 1.32 7.27 -52.48 -0.38 0.94 16 37 H 0.14 0.86 8.06 -52.48 -0.42 0.43 16 38 H 0.14 0.93 8.06 -52.48 -0.42 0.51 16 39 H 0.16 1.88 8.06 -52.49 -0.42 1.46 16 LS Contribution 352.97 15.07 5.32 5.32 Total: -1.00 -34.37 352.97 -7.75 -42.12 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -4.31 Total: 3.53 kcal Atomic # 6 Polarization: 10.26 SS G_CDS: -1.25 Total: 9.01 kcal Atomic # 7 Polarization: -51.51 SS G_CDS: 0.16 Total: -51.35 kcal Atomic # 8 Polarization: -24.66 SS G_CDS: -0.28 Total: -24.94 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Atomic # 16 Polarization: 1.78 SS G_CDS: -2.37 Total: -0.59 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.37 -7.75 -42.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001450854748.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.496 kcal (2) G-P(sol) polarization free energy of solvation -34.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds